What's Changed

• Changes required for Bioconda recipe by @Dfupa in https://github.com/Gabaldonlab/redundans/pull/102

Minor changes

• Improved some of binaries path
• Added LAST and merqury repositories snapshots to avoid versioning issues with bioconda-recipes
• Minor changes to README and stale_bot form Github Actions

Full Changelog: https://github.com/Gabaldonlab/redundans/compare/v2.00...v2.01

What's Changed

• Redundans v2.00 update by @Dfupa in https://github.com/Gabaldonlab/redundans/pull/98

Major changes

• Complete Python3 support
• Performance mode (minimap2) or sensitivity mode (LASTal) for the reduction step
• Reworked long read scaffolding step: either generate a dirty assembly based on the long reads (miniasm) to do reference scaffolding or use a graph based algorithm for scaffolding
• Added K-mer composition spectra reporting plots (meryl and merqury)

Minor changes

• Added GFA as additional output
• Added an heterozygous contig report
• Updated docker image and docker file.
• Incorporated previous python submodules (FastaIndex, Pyscaf)

Contributors

• @Dfupa https://github.com/Gabaldonlab/redundans/pull/98

Full Changelog: https://github.com/Gabaldonlab/redundans/compare/v1.01...v2.00

Archived 2016 release

Albeit late, this is the original Redundans v1.00 release from 2016 developed in Python2 with all the additional commits till now

What's Changed in v1.01

• Updated the snap-aligner binary to v2.0.1 in the .compile.sh
• Updated some documentation and help
• Securely pre-create log file, and honor $TMPDIR by @waoki in https://github.com/Gabaldonlab/redundans/pull/67