Published by pditommaso over 9 years ago
Published by pditommaso over 9 years ago
moveTo
should not throw a FileAlreadyExistsException
when target file already existsPublished by pditommaso over 9 years ago
shell
blockPublished by pditommaso over 9 years ago
when
guard for conditional executionshell
block that allows both BASH and Groovy variables in the same script blockset { }
into { }
tap { }
close()
value()
fixOwnership
docker config optionunstageStrategy
process config optionext
directive for user defined configuration propertiesgroupTuple
operatormaxErrors
when set to -1
- Issue #46map
operator is applied to a dataflow variables - Issue #44into
operator is applied to a dataflow variableGrengine
moduleSession
to remove dependency with CmdRun
object Added ability to set workDir
in the config filecp
command instead of rsync
workDir
variable from config filePublished by pditommaso over 9 years ago
map
operator is applied to a dataflow variablePublished by pditommaso over 9 years ago
processor
attribute - Issue #41echo
synchronisation strategy when writing to stdoutDuration
to stringgetTaskGlobalVars
methodPublished by pditommaso over 9 years ago
awk
S3Path
serialiser registation on DnaNexus executor initialisationPublished by pditommaso over 9 years ago
DynamicParameter
in usage string—-cpuset
command line option when using crg
executorPublished by pditommaso over 9 years ago
IllegalStateException
when executing a script in Nextflow consolePublished by pditommaso over 9 years ago
NXF_DEBUG
variableentrypoint
definition in docker run commanduge
executor as alias of SgeExecutor class-D
JVM properties command line option.command.log
to grid executorsstdout
and stderr
outputscrg
executorinfo <pipeline>
command with -d
option that shows git revision commit IDsPublished by pditommaso over 9 years ago
uge
executor as alias of SgeExecutor classPublished by pditommaso over 9 years ago
print
and println
operators plus tests and updated docsview
operator when specifying a closurecrg
executorbaseDir
and workDir
as string values when creating task unique hashsum
operator to allows it to handle lists with varying sizePublished by pditommaso over 9 years ago
module
and container
fields in execution trace logsum
operator and added mean
operatorPublished by pditommaso over 9 years ago
-terse
directive in job script is not workingPublished by pditommaso over 9 years ago
view
operator which hung when used on a dataflow variablesynchronized
declaration on Session cleanUp methodPublished by pditommaso almost 10 years ago
ifEmpty
operatorview
operatorremainder
optional parameter to phase
operatorPublished by pditommaso almost 10 years ago
Published by pditommaso almost 10 years ago
Published by pditommaso almost 10 years ago
Published by pditommaso almost 10 years ago