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New capabilities in antsTransformInfo to print affine jacobian determinants. Also fixes for Atropos and template construction with antsMultivariateTemplateConstruction2.sh.
Full Changelog: https://github.com/ANTsX/ANTs/compare/v2.5.2...v2.5.3
Published by cookpa 5 months ago
The main change here is LabelGeometryMeasures
, which has been updated to use a new filter. The previous filter is set to be deprecated by ITK because of computational inefficiencies and bugs, see https://github.com/InsightSoftwareConsortium/ITK/pull/4630.
Full Changelog: https://github.com/ANTsX/ANTs/compare/v2.5.1...v2.5.2
Published by cookpa 9 months ago
This release fixes a bug that caused Atropos to fail when using the HistogramParzenWindows likelihood model with multiple threads.
Script fixes and updates include better support for different head sizes in antsBrainExtraction.sh
, and support for priors in BIDS format in antsCorticalThickness.sh
.
The docker image is also updated (thanks @jennydaman) for improved performance and compatibility with different hardware architectures.
Full Changelog: https://github.com/ANTsX/ANTs/compare/v2.5.0...v2.5.1
Published by cookpa about 1 year ago
ANTSPATH
is no longer required for ANTs scripts. We now defer to PATH
for ANTs binaries and scripts. Thanks to @ghisvail for this fix.
Full Changelog: https://github.com/ANTsX/ANTs/compare/v2.4.4...v2.5.0
Published by cookpa over 1 year ago
Mostly computational updates, the big one is the addition of Windows binaries. Links to PRs below. Some highlights
v
to version by @DimitriPapadopoulos in https://github.com/ANTsX/ANTs/pull/1504
Full Changelog: https://github.com/ANTsX/ANTs/compare/v2.4.3...v2.4.4
Published by cookpa almost 2 years ago
This version is configured to build with ITK 5.3.0.
Note about the sampling strategy in SyN: this release allows sparse metric sampling in SyN, eg you can use Regular
or Random
sampling in the metric. Previously, these options were silently ignored for SyN (but not for other transforms). However, user-defined random seeds are not used in SyN and BSplineSyN. Fixing this required an ITK change and will be resolved in the next release. The default in all ANTs scripts is to use dense sampling in SyN / BSplineSyN, which are not affected.
Full Changelog: https://github.com/ANTsX/ANTs/compare/v2.4.2...v2.4.3
Published by cookpa about 2 years ago
antsRegistration
to fail unless --float
was usedFull Changelog: https://github.com/ANTsX/ANTs/compare/v2.4.1...v2.4.2
Published by cookpa about 2 years ago
Full Changelog: https://github.com/ANTsX/ANTs/compare/v2.4.0...v2.4.1
Published by cookpa over 2 years ago
Highlights (see full list of PRs below)
Bug fixes:
New features:
antsMotionCorr
to have mm or vox units, change defaults to vox for consistency with antsRegistration
(#1350).Code and documentation:
Full Changelog: https://github.com/ANTsX/ANTs/compare/v2.3.5...v2.4.0
Published by cookpa almost 4 years ago
Update 2022-04-23: Github has disabled the unencrypted git:// protocol. To compile this and previous releases as superbuilds, you must set the Git protocol to https with the cmake option ANTS_USE_GIT_PROTOCOL to OFF.
Bug fixes:
New features:
Code and documentation:
Published by cookpa over 4 years ago
New features:
Bug fixes:
Code and documentation:
Published by stnava over 4 years ago
This release contains a bug in antsRegistrationSyN.sh that is fixed in the 2.3.4 release.
Published by stnava almost 5 years ago
WIP: this is a first attempt at an updated release with new ITK etc.
Update 10/30/19: This release has a bug in antsRegistration
that causes the iterations per level to be incorrect. An index offset shifts the number of iterations by one level, so if you specify -c AxBxCxD
, the actual iterations performed will be BxCxDxE, where E is an undetermined unsigned integer. A fix is available here https://github.com/ANTsX/ANTs/commit/3d416475b296321dfe5e6cf905e05f197f4afb52.
Published by stnava over 6 years ago
Published by stnava over 6 years ago
uses recent ITKv5 performance enhancements
one may enforce reproducibility be setting the random seed and using a single execution thread.
improvements to antsAI
random bug fixes in scripts/code ( see commits )
style enhancements
generalization of types
ants longitudinal image processing pipeline
longitudinal JLF
MeasureImageSimilarity refactoring
Published by stnava over 7 years ago
First new release after two years. Will be updated with binaries as they become available.
Joint intensity fusion and new joint label fusion
longitudinal pipeline
asl tools
many bug fixes / documentation improvements
super-resolution
denoiser
antsSurf and antsVol
MINC transformations
jacobian fixes / tests
eigenanatomy and sccan improvements
style improvements
several travis-related updates
area fixes / estimates
the etymology of the release name here
Published by armaneshaghi over 9 years ago