Public development project of the LAMMPS MD software package
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Published by akohlmey over 5 years ago
Changes since patch release 30 April 2019:
drip
for dihedral-angle-corrected registry-dependent interlayer potential (DRIP): PR #1453 (Mingjian Wen, U Minnesota)e3b
for adding option to model the E3B water potential: PR #1428 (Steven E. Strong, U Chicago)fix print
: PR #1449 (Axel Kohlmeyer, Temple U)Backward compatibility notices:
rebo
no longer is compatible with the CH.airebo
potential file, but now requires its own potential file CH.rebo
. Tests are added to all AIREBO derived pair styles, that only compatible potential files are read in.pair_coeff
syntax and settings are allowed.Published by akohlmey over 5 years ago
Changes since patch release 29 March 2019:
electron/stopping
for modeling energy loss through interactions high speed atoms with electrons: PR #1399 (K. Avchaciov (Tartu U and U Helsinki) Risto Toijala (University of Helsinki) and others)using
in several header fileserror->one()
or error->all()
, so they can be intercepted, when LAMMPS is compiled with exception handling support: PR #1367 (Michal Kanski, Jagiellonian U)utils::strmatch()
: #1409Backward compatibility notices:
No known backward compatibility issues.
Published by akohlmey over 5 years ago
Changes since patch release 28 February 2019:
granular
, that allows much more flexible parameter settings: #1342 (Dan S. Bolintineanu, Ishan Srivastava, Jeremy B. Lechman, SNL)ev_init()
function: #1365 (Sebastian Huetter, OvGU)write_data
in several dihedral styles: PR #1370 (Axel Kohlmeyer, Temple U)kim-query
command and small corrections in KIM package: PR #1358, PR #1371, PR #1392 (Axel Kohlmeyer, Temple U, Ryan Elliot, UMN)make install-python
to CMake and consolidate and clean up several python module installation and documentation related issues: #1375 (Axel Kohlmeyer, Temple U)Backward compatibility notices:
python/install.py
have changed, but make install-python
works as beforePublished by akohlmey over 5 years ago
Changes since patch release 8 February 2019:
dynamical_matrix
command added to the USER-PHONON package, that computes the dynamical matrix from finite differences: PR #1314 (Charles Sievers, UC Davis)create_atoms
optimization for small regions in large boxes. this time hopefully without bug: PR #1348 (Axel Kohlmeyer, Temple U)lammps_scatter_atoms_subset()
in library interface for integer data. PR #1344 (Eugen Rožić, UCL)zero yes
. PR #1335 (Donatas Surblys, Tohoku U)none
to shared
(needed by GCC 9.x and later). minor corrections to documentation. PR #1331 and PR #1347 (Axel Kohlmeyer, Temple U)Backward compatibility notices:
Published by akohlmey over 5 years ago
This patch corrects a serious bug that was introduced in the previous patch release 1 February 2019:
The use of the create_atoms
command with the region
option while using a rotated lattice will result in creating fewer atoms than expected, and thus incorrect behavior. The offending code has been removed in #1321, which also contains several minor cleanups and bugfixes.
Beyond this important bugfix the patch includes an update of the Kokkos library to version 2.8.00 ( #1312 ),
a new KOKKOS angle style cosine
(#1306), and a rename of the python package base source files to avoid conflicts on OSs with case insensitive file systems (e.g. MacOS and Windows) #1316
Also included are updates to the appearance and management of processing pull requests and issues on GitHub (#1318 , #1319, #1322)
Published by akohlmey over 5 years ago
Changes since patch release 4 January 2019:
fix qeq/shielded
with pair_style reax/c
(Axel Kohlmeyer, Temple U): PR #1310memory->grow()
for 4d-arrays (Adrian Diaz, U Florida): PR #1285os
, shutil
, tarfile
and others. This makes those scripts independent of local tools. (Axel Kohlmeyer, Temple U): PR #1290Backward compatibility notices:
Install.py
in lib/kim
is slightly changed for complex usage casesPublished by akohlmey almost 6 years ago
Changes since stable release 12 December 2018:
fix deform
in fix nvt/sllod
: PR #1255 (Stan Moore, SNL)fix bond/react
: PR #1239 (Jake Gissinger, U Colorado)lib
folder to move redundant code into a module and make scripts more portable. PR #1233 (Axel Kohlmeyer, Temple U)read_dump
to parallel process dump files written in parallel: PR #1179 (Steve Plimpton, SNL)lebedeva/z
interlayer potential: PR #1230 (Zbigniew Kozioł, National Center for Nuclear Research, Otwock-Świerk, Poland), PR #1273Backward compatibility notices:
pair_style snap
command has simplified by removing a redundant element specifier.reax/c
, reax/c/kk
, and reax/c/omp
(USER-REAXC, KOKKOS, and USER-OMP package, respectively), and for MEAM calculations there is the USER-MEAMC package, which is fully compatible, and thus pair style meam
remains available as an alias to meam/c
.Published by akohlmey almost 6 years ago
Only minor and mostly cosmetic changes to documentation, source code management support and build system are included in this patch, which upgrades the 7Dec2018 patch release to the stable release 12Dec2018
Published by akohlmey almost 6 years ago
Here are a list of the major changes since the last stable release 22 August 2018:
general:
make spelling
in the doc folder. from now on, all new contributions to LAMMPS will be automatically spellchecked before inclusion.sprintf()
by snprintf()
new packages:
updates for packages:
Many small bugfixes, corrections for memory leaks and memory management inconsistencies and general improvements.
IMPORTANT NOTE: this is going to be the last LAMMPS version containing the REAX and MEAM packages. They have been essentially unmaintained and thus deprecated for a long time and are superseded by the USER-REAXC (with accelerator support in KOKKOS and USER-OMP) and the USER-MEAMC package.
Backward compatibility notices:
Published by akohlmey almost 6 years ago
Changes since patch release 27 November 2018:
fix plumed
, PR #1229fix tune/kspace
, PR #1240keep
flag, PR #1234Backward compatibility notice:
No backward compatibility issues are currently known.
This is the hopefully final candidate for the upcoming stable release.
Published by akohlmey almost 6 years ago
Changes since patch release 15 November 2018:
write_coeff
with class2 style angle, dihedral, or improper styles, PR #1219, PR #1225Backward compatibility notice:
The default installation prefix for CMake based compilation has been changed from /usr/local to $HOME/.local, so that people can safely do make install
with default settings and without root access or sudo.
This is the second release candidate for the upcoming stable release.
Published by akohlmey almost 6 years ago
Changes since patch release 9 November 2018:
Backward compatibility notice:
There are no known compatibility issues.
This is the first release candidate for the upcoming stable release.
Published by akohlmey almost 6 years ago
Changes since patch release 24 October 2018:
fix bond/react
considers with the stabilization option active to a custom group; allow custom update of charges on edges, PR #1189, PR #1195Backward compatibility notice:
The naming conventions for the group name of groups maintained by fix bond/react
have changed. Documentation and examples have been updated accordingly.
Pair styles in the USER-SPH package no longer support Pair::single()
. The existing functions reported always energy and forces 0, and thus have been removed.
Published by akohlmey almost 6 years ago
Changes since patch release 10 October 2018
compute adf
style for computing angular distribution functions (like rdf but over atom triple angles), plus simple example for water showcasing use of both, rdf and adf, PR #1168pair gran/hooke/history
, fix freeze
, fix gravity
, and fix nve/sphere
from the GRANULAR package to KOKKOS, PR #988-restart
flag into -restart2data
and add -restart2dump
, PR #1162momentum/kk
with newer GNU compilers for parallel_for()
constructs, #PR1169. this addresses the problem raised in issue #1045settings()
like all other "force" styles, PR #1165, PR #1174Backward compatibility notice:
The command line flags -restart
and -r
are no longer available. They have been replaced by -restart2data
and -r2data
, respectively.
Published by akohlmey about 6 years ago
Changes since patch release 18 September 2018
USER-PTM
package providing the compute ptm/atom
command for performing a polyhedral template matching analysis to characterize local structure. PR #1120Backward compatibility: The change in PR #1143 fixes an issue discussed in #1139 which reverses the meaning of the sign of mu in fix atom/swap. Thus behavior is changed significantly. The old, incorrect behavior can be recovered by reversing the sign of mu.
Published by akohlmey about 6 years ago
Significant changes since stable release 22 August 2018
Published by akohlmey about 6 years ago
Significant changes since patch release 31 August 2018
scafacos
, which is a wrapper around the ScaFaCoS Coulomb solver library which provides a variety of long-range coulomb solver methodsPublished by akohlmey about 6 years ago
Significant changes since patch release 5 September 2018
snprintf()
instead of sprintf()
morse/smooth/linear
bond/react
with brick communication stylechunk/reduce
and chunk/spread/atom
Published by rbberger about 6 years ago
Notable new features in this release are:
Published by akohlmey over 6 years ago
Notable new features in this release are:
Make.py
neb
and fix neb
.