nextflow

• Add support for rclone as stageOutMode option [fde2ac27]
• Add queueGlobalStatus config setting [ci fast] [f3339541]
• Add support for bearer token to GithubRepositoryProvider [c4d39384] [a2d2cbf60]
• Add -with-fusion cli option [d22337cd]
• Add support for Fusion container custom options [56e29d35]
• Add schedulingPriority option to AWS Batch (use with shareIdentifier) (#3505) [06960bb2]
• Fix support for AWS ACL for Batch #2671 [a9644919]
• Fix Java options.release in Gradle build [b362d6f6]
• Fix nf-httpfs module name in build file [568e47f6]
• Fix GitHub creds in CI build [4c4d3f81]
• Fix FilePorter concurrency issue (#3511) [11ccfa26]
• Fix watchPath hang shutdown execution [bac0cedf]
• Fix "no such file" error message to "no such file or directory" [ci fast] (#3547) [c292d84e]
• Improve local exec workdir validation [4a3a2720]
• Improve container native executor configuration [03126371]
• Improve AWS batch exit code reporting [d1bb2fe2]
• Improve channel factories error message [0215b9fc]
• Improve Google Batch executor [c0a25fc2]
• Improve Fusion config [902e5b34] [52f4c5d5]
• Improve redirection on Wave client [124cfb3e]
• Remove unnecessary Fusion env var [ci fast] [dfa47556]
• Remove deprecated method 'just' [d17b3c46]
• Remove deprecated methods [75e65035]
• Remove DSL1 deprecated code [5d290a47]
• Cleanup build from tmp manifests [326b3839]
• Minor compilation improvements [4188a6ac]
• Migrate all tests to DSL2 [14257d49]
• Bump 23.01.0-edge version [9ec31444]
• Bump groovy 3.0.14 [7c204236] [6f3ed6e8]
• Bump Grengine 3.0 [c0b1a7a6]
• Bump [email protected] [45d274e3]
• Bump [email protected] [db0ebe72]
• Bump [email protected] [a663fe16]
• Bump [email protected] [45fd53ad]
• Bump [email protected] [cf39ef8f]
• Bump [email protected] [7a6a78aa]
• Bump [email protected] [41fdcc72]

• Fix FilePorter concurrency issue (#3511) [0f757156]
• Fix watchPath hang shutdown execution [e03d9ca6]
• Add schedulingPriority option to AWS Batch (use with shareIdentifier) (#3505) [543ee7b1]

• Add fair process directive [60d34cfd]
• Add support for singularity registry setting [37c1aeb9]
• Add AWS profile config setting [66f4669f]
• Add support for AWS profile when resolving region [d8947707]
• Add support for Sarus container engine (#3470) [54673f18]
• Add support for Fusion ARM64 client [d073c538]
• Add allowedLocations option to google batch (#3453) [c619eb81]
• Add support for AWS config profile in NF config [37112672]
• Add warning on Google Logs failure [bdbcdde9]
• Add possible values of status in trace.txt to the documentation (#3451) [2425fcfb]
• Add support for AWS Glacier restore [b6110766]
• Add support for S3 storageClass to publishDir [066f9203]
• Add MathHelper utility class [7eecb266]
• Fix Wave layer invalid checksum due to not closed stream [e188bbf9]
• Fix Fusion test [2245a1c7]
• Fix Run fails when home is a symlink [9ff820f4]
• Fix math overflow when copying large AWS S3 files [f32ea0ba]
• Fix Quote the logName in the Cloud Logging filter (#3464) [b3975063]
• Fix Google Batch cloud logging (#3443) [e2bbcf15]
• Fix Tower plugin min nextflow requirement [1713a1cd]
• Fix TowerArchiver resolve envar paths relative to baseDir (#3438) [46af18e5]
• Error & info messages, code comments language fixes (#3475) [29ae36ca]
• Replace egrep with grep -E (#3485) [ac0c3035]
• Gradle build optimizations (#3483) [19182a57]
• Refactor virtual FS schemes to XPath class [fd59b943]
• Update concat operator description (#3426) [e8d8c3b5]
• Clarify usage of additional options for path qualifier (#3405) [0b70acb1]
• Clarify limitation of -with-docker in the docs (#3408) [79afc85d]
• Expose process queue as K8s pod label [4df8c8d2]
• Prefix nextflow K8s labels with nextflow.io prefix [9951fcd9]
• Remove deprecated code [c0b164f2]
• Rewrite fetchIamRole and fetchRegion to use AWS SDK (#3425) [e350f319]
• Improve Wave config error reporting [ae502668]
• Improve K8s retry on transient failures [d86ddc36]
• Remove DSL1 output mode [fa400d5f]
• Remove support for DSL1 multi into [f664af45]
• Bump [email protected] [ccaab713]
• Bump [email protected] [c07dcec2]
• Bump [email protected]
• Bump [email protected] [652d0880]
• Bump fusion version URLs 0.6 [a160a8b1]
• Bump AWS sdk version 1.12.351 [4dd82b66]

• Fix math overflow when copying large AWS S3 files [07f7cb72]
• Bump [email protected] [d96ca4c3]

• Fix TowerArchiver resolve envar paths relative to baseDir (#3438) [53e6348c]
• Fix tower plugin min nextflow requirement [103dbf74]
• Fix typos in the documentation [ci skip] (#3441) [ae95d90d]
• Add support for Java 19 [811e7ca8]
• Add support for custom Conda channels (#3435) [ci fast] [0884e80e]
• Add time directive to AWS Batch, clean language (#3436) [ci skip] [1ed2640a]
• Update err message [ci fast] [ab5bd81b]
• Fix Flux executor config (#3432) [ci fast] [68b45c92]
• Bump [email protected] [fe669152]
• Bump [email protected] [2dbf9906]

• Add support for Apptainer container engine (#3345) [29f98975]
• Add Flux executor to nextflow (#3412) [cc9fc3f0] [3711cef0]
• Add support for Wave containerPlatform [10d56ca1]
• Add CSI ephemeral volume for K8s (#2988) [f18f6e81]
• Add support for disk directive and emptyDir to K8s (#2998) [b548e1c7]
• Add Fusion support for custom S3 endpoints [fba9b649]
• Add support for Tower refresh token for dataset (#3366) [a19e055a]
• Prevent infinite loop while fetching git tags and branches [aa974d44]
• Improve file porter logging [626420b6]
• Improve script err logging [2714770e]
• Extend onFilePublish notification adding source path (#3284) [81acc3ef]
• Remove cpu limits from K8s pod spec builder (#3338) [dc7f78bf]
• Improve task name logging [5ddb7e3f]
• Add tower endpoint to wave [ci fast] [b725ddc4]
• Add Azure SAS token validation [e2244b48]
• Use cpus-shares for container resources (#3383) [b38c3880]
• Report full path scheme on error [4089ba65]
• Allow identity based authentication on Azure Batch (#3132) [a08611be]
• Fix support for remote file mail attachment (#3384) [6b496bb9]
• Fix task cache logging [ed37c4fd]
• Fix unexpected error on task resume [1c3f4685]
• Fix stripIndent failure with java 17 (#3377) [2b115c50]
• Fix -dockerized execution #3137 (#3148) [64a81a58]
• Improve default value in cli help of nextflow log -s (#3371) [2141f96e]
• upgrade jsoup and snakeyaml version (#3374) [6e2ca454]
• Bump Java 17 lang version + Java 11 as target [34f133e2]
• Bump [email protected] [e307912e]
• Bump [email protected] [07391d96]
• Bump [email protected] [4d787561]

• Prevent infinite loop while fetching git tags/branches [73a59d33]
• Bump [email protected] [f9b54ce3]
• Improve S3 thread pool config [01541b0a]

• Fix initialize the plugin once it's defined (#3360) [dd150b92]
• Fix tags typo in docs (#3355) [b82df4e0]
• Fix unexpected error on task resume [e02e8c27]
• Fix template script in trace record [cf828a68]
• Fix ip v6 support for K8s executor [53af5a7c]
• Fix refresh token for tower served resources [9dec2b66] #3366
• Fix full path scheme on error [1399f451]
• Add note to some process implicit variables (#3373) [0374f63a]
• Add retry policy on plugin download failure [e8dbec3f]
• Add examples of when dynamic output filenames are important (#3275) [72a17306]
• Update google batch java sdk, add serviceAccountEmail and installGpuDrivers (#3324) [7f7007a8]
• Update github actions to v3 (#3376) [d3b4a837]
• Update error messages and docs with new report filename behavior [f5725480]
• Bump [email protected] [164edf7c]
• Bump [email protected] [30cb118d]

• Fix mount pwd in the container when work dir is a symlink [ca397181] [b5b7d3cd]
• Fix secrets command name in the CLI (#3320) [ci fast] [321486df]
• Fix ver num rendering [ci fast] #3226 [5312a25e]
• Fix K8s config namespace is not applied [b3d33e3b]
• Fix log fetching from remote storage [be356939] [3efa1a20]
• Update docs about default mail ssl protocol [ci skip] (#3299) [15ffffc1]
• Update docs repeated words from documentation (#3311) [ci skip] [d59ea186]
• Update docs to clarify the difference between collect and toList (#3276) [7ee2b008]
• Update docs [516a7441]
• Update docs adding Fusion [11eac707]

• Fix timestamp encoding [47a3a3c4]
• Minor type change in Bridge executor [1f446ee1]
• Bump [email protected] [326803ff]

Included in previous RC and edge releases:

22.10.0-RC3 - 7 Oct 2022

• Fix K8s context selection [58b354e6]

22.10.0-RC2 - 7 Oct 2022

• Improve K8s labels/annotation validation [a569afdf]
• Bump fusion final url [80398880]
• Bump [email protected] [a2b44c4d]
• Update docs

22.10.0-RC1 - 3 Oct 2022

• Add module binaries enabling flag + docs [c50e178f]
• Add timestamp and fingerprint to wave request [a5a7e138]
• Add missing inputs to the incremental task "test" (#1442) [ci fast] [f85d59a6]
• Add support for refresh token to Wave [ed9f25f1]
• Add pretty option to dump operator [ci fast] [4218b299]
• Add support for custom S3 content type [02afa332]
• Get rid of file name rolling for report files [a762ed59]
• Ignore JGit warning when missing git tool [a94fa9c1]
• Remove jobname limit to HyperQueue executor (#3251) [99604ccb]
• Rename baseImage to mambaImage [ci fast] [50086028]
• Fix failing test [ci fast] [e6790003]
• Fix K8s cluster token when using serviceAccount [c3364d0f]
• Fix hanging test [44c04874]
• Improve docs (#3212) [ci skip] [5d80388c]
• Bump fusion snapshot [ci skip] [8e03f655]
• Bump wave endpoint [a044cc6a]
• Bump [email protected] [7424dc4b]
• Bump fusion config v0.5.1 [4dbdf112]
• Bump [email protected]
• Bump [email protected]
• Bump [email protected]

22.09.7-edge - 28 Sep 2022

• Fix Issue copying file bigger than 5gb to S3 [18fd9a44]
• Fix chmod command to accommodate hidden files in bindir (or empty bindir) (#3247) [a0fcc7b0]
• Bump [email protected] [f7f96e6f]

22.09.6-edge - 26 Sep 2022

• Add SocketTimeoutException to k8s client request retry [527e0d5d]
• Add MaxErrorRetry to K8s config [58be2128]
• Add tags propagation to AWS Batch [d64eeffc]
• Fix task resume when updating fusion layer [f38fd2db]
• Fix Channel merge still deprecated for DSL2 (#3220) [d27384d2]
• Apply GCP resourceLabels to the VirtualMachine (#3234) [2275c03c]
• Update Google Batch mount point with the requirements [5aec28ac]
• Improve wave error reporting [73842215]
• Bump fusion 0.4.x [26f1f896]

22.09.5-edge - 21 Sep 2022

• Use default wave strategy [abbfa7f4]
• Handle errors reported by tower report writer [0e814647]
• Fix AWS S3 copy object [b3b90d23]

22.09.4-edge - 19 Sep 2022

• Add Fusion display name [f789d457]
• Add container cleanup [cd2ae7dc]
• Add Wave interactive debug session [ce7fa651]
• Add support for wave build and cache repositories[692043ff]
• Add shutdown to Google Batch client [8f413cf7]
• Add native_id to Google Batch handler [352b4239]
• Add java sts library to enable use of IRSA in k8s (#3207) [62df42c3]
• Add support for module custon bin dirs [77f55262]
• Add support for tower token to wave client [928d5b04]
• Update CLI docs (#3200) [8acebee6]
• Fix issue with empty report file [9cc4f079]
• Do not return resource bundle for root module [775c7ed9]
• Improve tower config [ee03c243]
• Bump groovy 3.0.13 [4a17e198]

22.09.3-edge - 10 Sep 2022

• Add fusion support to K8s executor (#3142) [6bb27b32]
• Fix shutdown/cleanup hooks invocation [f4185070]
• Fix Use smaller buffer size for S3 stream uploader [8c643074] [9926d15d]
• Fix Azure NPE on missing pool opts [d5c0aabd]
• Fix handling of targetDir when using Fusion fs [2091b272]
• Document aws.batch.retryMode config (#3195) [56f75e0c]

22.09.2-edge - 7 Sep 2022

• Fix thread pool race condition on shutdown [8d2b0587]
• Fix Intermediate multipart upload requires a minimum size (#3193) [0b66aed6]
• Fix fusion enable detection [3ef91512]
• Add before-afterScript warning to docs (#3167) [09464590]
• Add httpReadTimeout and httpConnectTimeout config to K8s client [064f9bc4]
• Add support for Wave build & cache repos [98a275ba]
• Finalise secrets feature (#3161) [49021b82]
• Update executor retry config docs (#3001) [aed6c234]
• Change Azure test pool name [0c724504]
• Improve Wave error reporting [b11d0f11]
• Remove unneeded launcher file remapping [a255118d]
• Update Azure vm types [80f5fbe4]
• Update docs logos (#3174) [529bad81]

22.09.1-edge - 1 Sep 2022

• Add support for Charliecloud v0.28 (#3116) [84f43a33] <Patrick Hüther>
• Add Support for EC-encrypted keys for K8s client [fd759d09]
• Add support for Bridge batch scheduler (#3106) [343c17e6]
• Add fusion support to local executor [17160bb0] [6cfb51e7]
• Add getTags and getBranches to BitBucketServer [53bd89cd]
• Add retry strategy to httpfs client [55f9c87b]
• Add support for project resources [c2ad6566]
• Add mamba build options [987a13cb]
• Fix Do not override tower endpoint in the config [41fb1ad0]
• Fix Hyperqueue job names must be less than 40 chars #3151 [8e43670b]
• Fix typo in ConfigBuilder.groovy (#3143) [659e6108]
• Fix Resume for dynamic resolved containers [13483ff2]
• Improve fusion env handling [10f35b60]
• Improve foreign file(s) cache detection logic [3a9352c8]
• Rename ModuleBundle to ResourcesBundle [0e51dc0f]
• Use quiet output mode for hyperqueue executor (#3103) [70a91fdf]
• Wave improve conda settings [6f087fec]
• Improve secrets cmd (#3158) [115b2f3d]
• Improve Wave resolution strategy [2eb700c6]
• Improve Az Batch err handling and testing [85d31e8d]
• Bump google-cloud-batch 0.2.2
• Bump spock 2.2

22.08.2-edge - 16 Aug 2022

• Fix queueSize setting is not honoured by AWS Batch executor (again) #3117 [1733bb2e]
• Add files() method to docs (#3123) [00bb8896]
• Refactor wave packing [bc876986]
• Improve logging [aa380d5f]
• Update dockerfile [e6329282]

22.08.1-edge - 11 Aug 2022

• Add support for disabling config include [e0859a12]
• Add experimental fusion support [1854f1f2]
• Add support for plugin provided function extension (#3079) [16230c2b]
• Add support for AWS Batch logs group (#3092) [4ef043ac]
• Add share identifier to Aws Batch (#3089) [c0253aba]
• Improve Tower cache manager [0091afc5]
• Improve S3 copy via xfer manager [02d2beae]
• Reports a warning when using NXF vars in the config [009ec256]
• Make wake token cache duration config [5f955fc9]
• Patch unable to start non-core plugin [a55f58ff]
• Increase S3 upload chunk size to 100 MB [9c94a080]
• Change Google Batch disk directive to override boot disk size (#3097) [7e1c0686]
• Fix queueSize setting is not honoured by AWS Batch executor (#3093) [d07bb52b]
• Fix Allow disabling scratch with Google Batch [e8e5c721]
• Fix Emit relative path when relative parameter is set (#3072) [39797759]
• Bump [email protected] [e46d341d]
• Bump [email protected] [cdc2be53]
• Bump [email protected] [c39935a5]
• Bump [email protected] [ccdf62d0]

22.08.0-edge - 1 Aug 2022

• Add warning to env config docs (#3083) [ca933c16]
• Add -with-conda CLI option (#3073) [98b2ac80]
• Add simple wave plugin cli commands [8888b866]
• Add default wave plugin [7793a0ec]
• Add boot disk, cpu platform to google batch (#3058) [17a8483d]
• Add support for GPU accelerator to Google Batch (#3056) [f34ad7f6]
• Add support for archive dir to tower plugin [c234681a]
• Add support tower cache backup/restore [bc2f9d13]
• Add disk directive to google batch (#3057) [ec6e290c]
• Add retry when Azure submit fails with OperationTimedOut [6a3f9742]
• Add warning when Google Batch quota is exceeded (#3066) [6b9c52ad]
• Allow fully disabling history file [0a45f858]
• Allow the support function overloading and default parameters (#3011) [042d3857]
• Improve S3 file upload/download via Transfer manager [7e8d2a5a]
• Prevent overriding container entrypoint [b3a4bf85]
• Update FileTransfer pool settings [503aafce]
• Remove deprecated commands [93228b4b]
• Prevent nextflow config to break tower launch [e059a724]
• Refactor Google Batch executor to use Java API (#3044) [31a6e85c]
• Fix Unable to disable scratch attribute with AWS Batch [1770f73a]
• Fix unit test setting explicit permissions for test files [1c821139]
• Fix Default plugins are overriden by config plugins [46cf3bfa]
• Fix S3 transfer download directory [b7bf9fe5]
• Fix NPE while setting S3 ObjectMetada #3031 [d6163431]
• Fix Unable to retrieve AWS batch instance type #1658 [3c4d4d3b]
• Fix AWS Batch job definition conflict (#3048) [e5084418]
• Fix JAVA_TOOL_OPTIONS breaking launch #1716 [0e7b416d]
• Fix add ps shared objects to Dockerfile (#3033) [1c23b40a]
• Parallelize build integration tests [807800a3]
• Bump google-cloud-nio:0.124.8 [dfaa9d19]
• Bump groovy 3.0.12 [5c900b91]
• Bump Moment.js 2.29.4 [a9ced868]
• Bump [email protected] [12f17176]
• Bump [email protected]
• Bump [email protected]
• Bump [email protected]
• Bump [email protected]
• Bump [email protected]

22.07.1-edge - 13 Jul 2022

• Add support for Google Batch API v1 [4c116d58] [e85d87ee]
• Add time directive support for K8s executor (#2948) [2b6f70a8]
• Add docs aws.client.s3PathStyleAccess config (#3000) [20005500]
• Allow to override lsf.conf settings with nextflow config #2862 [dae191a1]
• Allow hybrid containers execution [0af1bcb3]
• Improve error msg when script file cannot be read [52c2780e]
• Improve error reporting for custom function [877c7931]
• Improve error message for missing plugin extension [4a43db84]
• Improve test #3019 [7c37e0be]
• Rename kuberun -pod-image to -head-image [2576ba62]
• Externalise sqldb plugin source code [17e80b4f]
• Fix escape unstage outputs with double quotes #2912 #2904 #2790 [49ff02a6]
• Fix Exception when settings AWS Batch containerOptions #3019 [89312ad8]
• Fix Missing query param in http file (#2918) [43cc8511]
• Fix Publish copy mode for S3 based path [085f6b2b]
• Fix Fail fast uploads to S3 (#2969) [7fd1a6e1]
• Fix null script name in launch info [7118849f]
• Bump [email protected] [a06b4442]
• Bump [email protected] [3331826f]
• Bump [email protected] [de62fd3f]
• Bump [email protected] [3234ddd5]

22.07.0-edge - [SKIPPED]

22.06.1-edge - 17 Jun 2022

• Fix CodeCommit creds handling + [email protected] [70fc0745]
• Fix typo in log message [a8f8529d]
• Add more scientists to the list of random names [8d5b36a2]

22.06.0-edge - 9 Jun 2022

• Add AWS CodeCommit initial support [80fba6e9]
• Add support for 307 and 308 HTTP redirection [92382012]
• Add DirWatcher v2 [209c82cd]
• Add Moriondo in the list of random names [e0abca58]
• Add preview CLI option (#2914) [aa8f1aa4]
• Fix Git config resultion error [64436697]
• Fix StackOverflowError when dump all profiles (#2922) [28cd11a2]
• Fix gradle warning message in nf-sqldb (#2921) [b09ceabe]
• Fix log for LsfExecutror perTaskReserve attribute [7c3ec874]
• Fix external pod deletion for jobs (#2915) [4dd1af7a]
• Prevent function overloading in module definition [c0b522ab]
• Improve error message of non sensical include (#2623) [285fe49c]
• Mount PWD path only when scratch is used [9b3c6e31]
• Stripe sensitive data into strings (#2908) [7fa4c86c]
• Dump scm content when trace is enabled [c3117ada]

22.05.0-edge 25 May 2022

• Add Hyperqueue executor (#2896) [ffa5712e]
• Add support for K8s Job resource [c70eb12d]
• Add support for time process directive in GLS executor (#2880) [1402e183]
• Add support for priviledge option for K8s containers [7ffe3a02]
• Add DSL1 option to docs (#2836) [d30841a5]
• Add support for container options to Azure Batch [3f4f00f9]
• Add support for move operation to AWS S3 [8c0ddfd5]
• Add K8s execution hostname in the trace file (#2828) [ebaef92a]
• Add support for AWS S3 encyption using a custom KMS key [c1e45aa9]
• Add support for Micromamba [383e023f]
• Add jaxb-api dependecy to nf-amazon [c1a09f87]
• Add strict mode config setting [ci fast] [696e70b5]
• Add -head-prescript option to kuberun (#2830) [9e387055]
• Fix missing err message on submit failure [233e67f0] (#2899)
• Fix resolve azure devops repositories when projectId is present [2500ff01]
• Fix AthenaJdbc into distribution zip [853a1f2a] [4b3579d5] [70ef7ee3]
• Fix Inconsistent bool parsing #2881 [40bf2b2a]
• Fix Unable to pull pipeline if config file is not in default branch (#2876) [4ee5b04f]
• Fix Prevent crash when scratch dir does not exist (#2888) [9ef44ae5]
• Fix DSL1 detection to invalid workflow keyword matching [fe0700b0] (#2879)
• Fix Aws Batch retry policy on spot reclaim [6e029b79]
• Fix 'false' string in config interpreted as true (#2865) [079a18ce]
• Improve Git Provider config logging [d7dbca8ec]
• Improve K8s task handler [1822b2ca]
• Improve missing workflow err message [da101e8f] (#2871)
• Include revision in the Azure Repos provider when specified (#2861) [3342c767]
• Remove unnecessary change dir echo [372d1f47]
• Abort execution when accessing undefined params with strict mode [93836081]
• Update docker base image [50cd7956]
• Update default SKU for Azure Batch (#2868) [9ea09dba] ]
• Update dependencies [405d9545]
• Refactoring to prevent name conflict [aba2671b]
• Few DSL syntax to explicit declaration of plugin extensions (#2820) [bfc4a067]
• Sanitize k8s label and annotation keys, don't sanitize annotation value (#2843) [5287a984]
• Docs improvement (#2835) [09e5bca3]
• Bump Jgit 6.1 [7186348c]
• Bump Spock 2.1 [51100d16]
• Bump capsule 1.1.1 [20ec1697]

• Fix K8s context selection [58b354e6]

22.10.0-RC2 - 7 Oct 2022

• Improve K8s labels/annotation validation [a569afdf]
• Bump fusion final URL [80398880]
• Bump [email protected] [a2b44c4d]
• Update docs

• Add module binaries enabling flag + docs [c50e178f]
• Add timestamp and fingerprint to wave request [a5a7e138]
• Add missing inputs to the incremental task "test" (#1442) [ci fast] [f85d59a6]
• Add support for refresh token to Wave [ed9f25f1]
• Add pretty option to dump operator [ci fast] [4218b299]
• Add support for custom S3 content type [02afa332]
• Get rid of file name rolling for report files [a762ed59]
• Ignore JGit warning when missing git tool [a94fa9c1]
• Remove jobname limit to HyperQueue executor (#3251) [99604ccb]
• Rename baseImage to mambaImage [ci fast] [50086028]
• Fix failing test [ci fast] [e6790003]
• Fix K8s cluster token when using serviceAccount [c3364d0f]
• Fix hanging test [44c04874]
• Improve docs (#3212) [ci skip] [5d80388c]
• Bump fusion snapshot [ci skip] [8e03f655]
• Bump wave endpoint [a044cc6a]
• Bump [email protected] [7424dc4b]
• Bump fusion config v0.5.1 [4dbdf112]
• Bump [email protected]
• Bump [email protected]
• Bump [email protected]

• Fix Issue copying file bigger than 5gb to S3 [18fd9a44]
• Fix chmod command to accommodate hidden files in bindir (or empty bindir) (#3247) [a0fcc7b0]
• Bump [email protected] [f7f96e6f]

• Add SocketTimeoutException to k8s client request retry [527e0d5d]
• Add MaxErrorRetry to K8s config [58be2128]
• Add tags propagation to AWS Batch [d64eeffc]
• Fix task resume when updating fusion layer [f38fd2db]
• Fix Channel merge still deprecated for DSL2 (#3220) [d27384d2]
• Apply GCP resourceLabels to the VirtualMachine (#3234) [2275c03c]
• Update Google Batch mount point with the requirements [5aec28ac]
• Improve wave error reporting [73842215]
• Bump fusion 0.4.x [26f1f896]

• Use default wave strategy [abbfa7f4]
• Handle errors reported by tower report writer [0e814647]
• Fix AWS S3 copy object [b3b90d23]

• Add Fusion display name [f789d457]
• Add container cleanup [cd2ae7dc]
• Add Wave interactive debug session [ce7fa651]
• Add support for wave build and cache repositories[692043ff]
• Add shutdown to Google Batch client [8f413cf7]
• Add native_id to Google Batch handler [352b4239]
• Add java sts library to enable use of IRSA in k8s (#3207) [62df42c3]
• Add support for module custon bin dirs [77f55262]
• Add support for tower token to wave client [928d5b04]
• Update CLI docs (#3200) [8acebee6]
• Fix issue with empty report file [9cc4f079]
• Do not return resource bundle for root module [775c7ed9]
• Improve tower config [ee03c243]
• Bump groovy 3.0.13 [4a17e198]

• Add Fusion support to K8s executor (#3142) [6bb27b32]
• Fix shutdown/cleanup hooks invocation [f4185070]
• Fix Use smaller buffer size for S3 stream uploader [8c643074] [9926d15d]
• Fix Azure NPE on missing pool opts [d5c0aabd]
• Fix handling of targetDir when using Fusion fs [2091b272]
• Document aws.batch.retryMode config (#3195) [56f75e0c]

• Fix thread pool race condition on shutdown [8d2b0587]
• Fix Intermediate multipart upload requires a minimum size (#3193) [0b66aed6]
• Fix fusion enable detection [3ef91512]
• Add before-afterScript warning to docs (#3167) [09464590]
• Add httpReadTimeout and httpConnectTimeout config to K8s client [064f9bc4]
• Add support for Wave build & cache repos [98a275ba]
• Finalise secrets feature (#3161) [49021b82]
• Update executor retry config docs (#3001) [aed6c234]
• Change Azure test pool name [0c724504]
• Improve Wave error reporting [b11d0f11]
• Remove unneeded launcher file remapping [a255118d]
• Update Azure vm types [80f5fbe4]
• Update docs logos (#3174) [529bad81]

• Add support for Charliecloud v0.28 (#3116) [84f43a33] <Patrick Hüther>
• Add Support for EC-encrypted keys for K8s client [fd759d09]
• Add support for Bridge batch scheduler (#3106) [343c17e6]
• Add fusion support to local executor [17160bb0] [6cfb51e7]
• Add getTags and getBranches to BitBucketServer [53bd89cd]
• Add retry strategy to httpfs client [55f9c87b]
• Add support for project resources [c2ad6566]
• Add mamba build options [987a13cb]
• Fix Do not override tower endpoint in the config [41fb1ad0]
• Fix Hyperqueue job names must be less than 40 chars #3151 [8e43670b]
• Fix typo in ConfigBuilder.groovy (#3143) [659e6108]
• Fix Resume for dynamically resolved containers [13483ff2]
• Improve fusion env handling [10f35b60]
• Improve foreign file(s) cache detection logic [3a9352c8]
• Rename ModuleBundle to ResourcesBundle [0e51dc0f]
• Use quiet output mode for Hyperqueue executor (#3103) [70a91fdf]
• Wave improve Conda settings [6f087fec]
• Improve secrets cmd (#3158) [115b2f3d]
• Improve Wave resolution strategy [2eb700c6]
• Improve Az Batch err handling and testing [85d31e8d]
• Bump google-cloud-batch 0.2.2
• Bump Spock 2.2