nextflow

• Fix race condition on plugin autoload status [73a0893ce]

• Add process and workflow recursion (PREVIEW) [9f51155e9]
• Fix include no longer works for custom methods [6adfce099]
• Fix Azure executor fail to cleanup jobs on completion [533448be4]
• Fix Missing AWS SSE encryption for begin and exit task files #2452 [2c6665ef9]
• Fix false positive detection of publishDir conflict [6ea54eaea]
• Fix execution hang when reading empty error file [414240a1a]
• Test with java-17 LTS [c2141e826]
• Improve plugins dev root detection [b095bee15]
• Change Azure test pool vmType [ad5ad97ab]
• Downgrade Google NIO library to version 0.121.2 [896ec3abd]
• Bump [email protected] - bump [email protected] (6 days ago)
• Bump [email protected] [email protected] [email protected] [92f94bfeb]
• Bump gradle 7.3.1 [2c34a3a27]

• Fix include no longer works for custom functions #2469 [e17f6155d]
• Bump [email protected] - bump [email protected] [be893dcb1]

Fix execution hang when reading empty error file [414240a1a]

• Fix Azure executor fail to cleanup jobs on completion [4d5b71370]
• Fix Missing AWS SSE encryption for begin and exit task files #2452 [841e6101b]
• Fix Azure integration test [a8051bc01]
• Fix false positive detection of publishDir conflict [292b439ad]
• Make Azure executor logging less verbose [7452e386d]
• Change Azure test pool vmType [85682be7d]
• Downgrade Google NIO library to version 0.121.2 [66ae98820]
• Add java 16 and 17 to the launch.sh for debugging #2457 [3ff0a248e]

• Fix Azure batch NPE when missing pool spec [84b2983f4]
• Fix Docker bin in image PATH #2445 [d30da377a]
• Fix failing test with Java 16 [f2d01888d]
• Fix AWS_RETRY_MODE var definition in Batch job [f1a58600d]
• Add docs for AWS endpoints for China region [e96c56d1e]
• Correct description of cross #2446 [e4c7f3d98]
• Dump resolved config when log trace is enabled [2580fb108]
• Bump [email protected] [eb1e6fbd2]
• Bump [email protected] - bump [email protected] [ae9e885a8]

• Add support for Java 17 [cb207cd64]
• Allow override Bash wrapper template files [e6e25ed7c]
• Fix issue with plugins local root sync [1d974a4eb]
• Fix Nextflow does not recognised Failed pod (#2430) [9c80cdea0]
• Fix Error reporting on Bash launcher creation failure [63e01c324]
• Fix Channel.fromSRA error one some project ids #2156 [dbcbac139]
• Fix Task completion percentage #2440
• Display no workflow warn if no main is defined [0f1295694]
• Invalidate task cache on directive change (EXPERIMENTAL) [62ded3421]
• Upgrade XmlParser used by SraExplorer [543b582b5]
• Use AWS Batch resources requirement for CPUs and memory [1cf2c379c]
• Bump Gradle 7.3 stable + GHA cache [4eaa4f25f]

21.09.1-edge - 28 Oct 2021

• Fix issue with config selectors and DSL2 [4d7d3e972]
• Fix issue evaluating dynamic errorStrategy with AWS Batch [8c6a5a6e2] [ce4d491b1]
• Fix verbose logging [92b113134]
• Fix docker image url [ed24a475d]
• Fix Temporary directories not deleted in on_exit #2406 [181bdf528]
• Fix implict authentication for resources served by Tower [e30310b4f]
• Fix No more of 255 channels can be defined into a workflow context #2417 [7f91ecb39]
• Add tip about escaping variables in env scope #2366
• Add K8s env fieldPath option to pod directive #2363
• Improve AWS Batch error report fetching CloudWatch logs [b9f9578f1] [e229700ef]
• Improve docs about IAM policies for AWS Batch #2391
• Accommodate token in password field for Gitlab #2389 [ee32b7726]
• Report a warning when main workflow is not defined [83aec6e8b]
• Bump nf-amazon 1.3.0
• Bump [email protected]
• Bump [email protected]

21.09.0-edge - 12 Oct 2021

• Add secrets manager (preview) [da2a5ff1a] [2d66f83ca]
• Add Built-in support for Azure File Shares #2285 [a4c3e0ad5]
• Add Azure pool node SKU selection #2360 [9afcac756]
• Add support for protocol option to fromSRA #2087 [371f858ab]
• Add retry on AWS Job definition not-found error [452cae5d8]
• Add ability to define templates library at module level #2332 [7e7d52573]
• Add missing information for pulling images from private registry in Azure Batch #2355 [040e190bd]
• Add $NXF_CLI_OPTS env variable [7d57acca5]
• Add NXF_CACHE_MODE env variable [1c345c497]
• Fix asset directory consistent hashing via sha256 checksum [4c5c0ef41]
• Fix issue invoking extension method with GString params [570e5299c]
• Fix Prevent pipeline stopping when K8s pod is evicted [f9db9cc77]
• Fix clean command for Google storage [dc9625eb9]
• Fix plugins detection in local repo [6441a3882]
• Fix S3 canned ACL documentation #2334 [69216e292]
• Fix docker image build with recent docker [2aad36897] [1e485b32b]
• Fix amazon plugin is not used when using bucketDir option [6a8c50ad4]
• Fix Plugin dependency requirement overrides core plugin #2303 [4d1762fb3]
• Fix Make K8s ImagePullBackOff and ErrImagePull recoverable #2302 [766ffde40]
• Improve cache resume strategy [0b0eae225]
• Improve GH action build compressing integration tests [ab9d747d4]
• Prevent NPE if session is not set [83bb46d94]
• Remove deprecated attribute [50d63b6fb]
• Find newest matching plugin #2303 [e6cf79ff3]
• Documents noproxy variable #2325 [bc769b1b4]
• Bump Groovy 3.0.9 [dee2d6c99]
• Bump [email protected]
• Bump [email protected]
• Bump [email protected]
• Bump [email protected]

21.08.0-edge - 30 Aug 2021

• Fix plugin updater version logging [d162eb8b4]
• Fix Nextflow launcher breaks when java path contains blanks #2265 [8097a2a90]
• Fix docker build [efb2f449b]
• Fix NPE in AnsiLogObserver #2283 [cffc683df]
• Fix run script when fixing ownership in aws batch #2262
• Improve plugins auto start [283144474]
• Improve log error reporting [401863085]
• Improve handling of K8s node shutdown [67250c041]
• Update GitHub docs [4532b8e1e]
• Merge nf-sqldb 0.1.0

21.07.0-edge - 6 Aug 2021

• Add support for AWS_MAX_ATTEMPTS variable [3cc543589]
• Add app plugin to gradle build [007bc1cb4]
• Add self pid to tower client [d2e54ea22]
• Add support for head job operationId + log/out files [a7a76cf91]
• Add enable CA Issuers option to NF launcher [8f51dc787]
• Fix Clean cmd fails removing foreign files [8bf8ab720]
• Fix Prevent script var names conflicting with private names #2246 [82bbc180e]
• Fix ENA download URL #2239 [befbabbc8]
• Fix Tower client is not activated launching all packaging #2145 [c507518c2]
• Fix orphaned AWS Batch jobs after pipeline interruption #2169 [65e2a4d05]
• Fix Process error report on target exception #1896 [1bac3f17b]
• Fix Unexpected bool conversion on publishDir enable/overwrite attributes #2220 [651835d2d]
• Fix BatchCleanup toString method [ec9bb5648]
• Improve error reporting [49ac01dbb]
• Improve Unknown host error message [ad41d1e98]
• Improve AWS Batch task handler [eb1aff275]
• Use AWS cli standard retry mode by default [f2f1fdea4]
• Report warn on cache hashing failures [7bf93de06] [3b579c954]

21.06.0-edge - 3 Jul 2021

• Add Keep alive option to Google LS executor [994222074]
• Add support for FTP proxy and proxy servers authentication [8ec33b04d]
• Add support for plugins groupping [aa5bc7d34]
• Add More details about the reason why a AWS Batch job has failed #2146 [27a4e88b2]
• Add support for extensions priority [ae083f1aa]
• Add stubRun attribute to workflow metadata #2164 [86cfc66fd]
• Add Run tasks under user accounts in Azure Batch #2157 [1c9fc4a40]
• Refactor GLS executor [2c86b79a4] [97fc49c09]
• Refactor AWS batch job def creation [89ce364c9] [986894287]
• Fix Default plugin version lookup [e0c8151d9]
• Fix Negative labels do not work as expected #2155 [491191811]
• Fix PublishDir overwriting task output files [190aa4eaf]
• Fix directory deletion strategy [b96fcedc8]
• Fix Implicit variable projectDir breaks caching #2186 [76417d273]
• Fix Prevent empty download array [9492cde5d]
• Fix output unstage with glob pattern [2d4c3dfcf]
• Fix Connection-reset crashes the workflow [3ee4fd0eb] [1400ded6d] [61bbc240a] [175c66584]
• Fix Slurm does not send soft kill message #2163 [f0ccfc7e8]
• Fix storeDir directive does not work with S3 #2141 [2e95a6a76]
• Fix maven local publish [05cfb7cf7]
• Fix GLS transfer attempts opts [f7c705db5]
• Fix build exportClasspath task [88d27f0c8]
• Fix PbsPro clusterOptions directive priority #2036 [75e3f225e]
• Disallow include nested within a workflow block [7dbf64bea]
• Upgrade AWS SDK minor version #2167 [296afaa8f]
• Improve gsutil transfer throughput [2da120b91]
• Improve config error reporting [6aa102430]

21.05.0-edge - 28 May 2021

• Add support for using mamba with conda (#2030) [10c8385b]
• Add AWS cli native error fail-over [fd7670ef]
• Add support for Container Registry to Az Batch executor (#2078) [12bf2da6]
• Add support for Tower workspace (#2097) [8a4dd3ab]
• Add support custom service account email in Google Cloud LifeSciences executor (#2044) [a642c9ea]
• Add support for Java 16 + Gradle 7 [caace1c5] [e2dd4510] [74e466e0] [1245ab1c] [bfc69fb6]
• Improve tower client error reporting [4efb6bf6]
• Fix Plugin install lock file is not deleted #2103 [b7fdffac]
• Fix Use caller runs policy of default thread pool #2021 [48b4e8ee]
• Fix Error reporting for malformed config [68e5ca18]
• Decrease max par transfers to 4 [c7ea816a]
• Prevent fetching aws instance type when missing container id [f5f96049]
• Use default opts for trace file creation [d8ae94bf]
• Improve Azure Batch executor error code and messages for failed Tasks (#2099) [1d5fa5d5]
• Bump groovy 3.0.8 [aa695e12]
• Bump [email protected] [8d361954]

• Fix issue with config selectors and DSL2 [4d7d3e972]
• Fix issue evaluating dynamic errorStrategy with AWS Batch [8c6a5a6e2] [ce4d491b1]
• Fix verbose logging [92b113134]
• Fix docker image url [ed24a475d]
• Fix Temporary directories not deleted in on_exit #2406 [181bdf528]
• Fix implict authentication for resources served by Tower [e30310b4f]
• Fix No more of 255 channels can be defined into a workflow context #2417 [7f91ecb39]
• Add tip about escaping variables in env scope #2366
• Add K8s env fieldPath option to pod directive #2363
• Improve AWS Batch error report fetching CloudWatch logs [b9f9578f1] [e229700ef]
• Improve docs about IAM policies for AWS Batch #2391
• Accommodate token in password field for Gitlab #2389 [ee32b7726]
• Report a warning when main workflow is not defined [83aec6e8b]
• Bump nf-amazon 1.3.0
• Bump [email protected]
• Bump [email protected]

• Add secrets manager (preview) [da2a5ff1a] [2d66f83ca]
• Add Built-in support for Azure File Shares #2285 [a4c3e0ad5]
• Add Azure pool node SKU selection #2360 [9afcac756]
• Add support for protocol option to fromSRA #2087 [371f858ab]
• Add retry on AWS Job definition not-found error [452cae5d8]
• Add ability to define templates library at module level #2332 [7e7d52573]
• Add missing information for pulling images from private registry in Azure Batch #2355 [040e190bd]
• Add $NXF_CLI_OPTS env variable [7d57acca5]
• Add NXF_CACHE_MODE env variable [1c345c497]
• Fix asset directory consistent hashing via sha256 checksum [4c5c0ef41]
• Fix issue invoking extension method with GString params [570e5299c]
• Fix Prevent pipeline stopping when K8s pod is evicted [f9db9cc77]
• Fix clean command for Google storage [dc9625eb9]
• Fix plugins detection in local repo [6441a3882]
• Fix S3 canned ACL documentation #2334 [69216e292]
• Fix docker image build with recent docker [2aad36897] [1e485b32b]
• Fix amazon plugin is not used when using bucketDir option [6a8c50ad4]
• Fix Plugin dependency requirement overrides core plugin #2303 [4d1762fb3]
• Fix Make K8s ImagePullBackOff and ErrImagePull recoverable #2302 [766ffde40]
• Improve cache resume strategy [0b0eae225]
• Improve GH action build compressing integration tests [ab9d747d4]
• Prevent NPE if session is not set [83bb46d94]
• Remove deprecated attribute [50d63b6fb]
• Find newest matching plugin #2303 [e6cf79ff3]
• Documents noproxy variable #2325 [bc769b1b4]
• Bump Groovy 3.0.9 [dee2d6c99]
• Bump [email protected]
• Bump [email protected]
• Bump [email protected]
• Bump [email protected]

• Fix plugin updater version logging [d162eb8b4]
• Fix Nextflow launcher breaks when java path contains blanks #2265 [8097a2a90]
• Fix docker build [efb2f449b]
• Fix NPE in AnsiLogObserver #2283 [cffc683df]
• Fix run script when fixing ownership in aws batch #2262
• Improve plugins auto start [283144474]
• Improve log error reporting [401863085]
• Improve handling of K8s node shutdown [67250c041]
• Update GitHub docs [4532b8e1e]
• Merge nf-sqldb 0.1.0

• Add support for AWS_MAX_ATTEMPTS variable [3cc543589]
• Add app plugin to gradle build [007bc1cb4]
• Add self pid to tower client [d2e54ea22]
• Add support for head job operationId + log/out files [a7a76cf91]
• Add enable CA Issuers option to NF launcher [8f51dc787]
• Fix Clean cmd fails removing foreign files [8bf8ab720]
• Fix Prevent script var names conflicting with private names #2246 [82bbc180e]
• Fix ENA download URL #2239 [befbabbc8]
• Fix Tower client is not activated launching all packaging #2145 [c507518c2]
• Fix orphaned AWS Batch jobs after pipeline interruption #2169 [65e2a4d05]
• Fix Process error report on target exception #1896 [1bac3f17b]
• Fix Unexpected bool conversion on publishDir enable/overwrite attributes #2220 [651835d2d]
• Fix BatchCleanup toString method [ec9bb5648]
• Improve error reporting [49ac01dbb]
• Improve Unknown host error message [ad41d1e98]
• Improve AWS Batch task handler [eb1aff275]
• Use AWS cli standard retry mode by default [f2f1fdea4]
• Report warn on cache hashing failures [7bf93de06] [3b579c954]

• Fix Tower client is not activated launching all packaging

• Fix Plugin install lock file is not deleted #2103 [29c3e516c]
• Fix Default plugin version lookup [d340a221f]
• Fix BatchCleanup toString method [3c67fa3ae]
• Implicit variable projectDir breaks caching #2186 [7a4d1f1a2]

• Add Keep alive option to Google LS executor [994222074]
• Add support for FTP proxy and proxy servers authentication [8ec33b04d]
• Add support for plugins groupping [aa5bc7d34]
• Add More details about the reason why a AWS Batch job has failed #2146 [27a4e88b2]
• Add support for extensions priority [ae083f1aa]
• Add stubRun attribute to workflow metadata #2164 [86cfc66fd]
• Add Run tasks under user accounts in Azure Batch #2157 [1c9fc4a40]
• Refactor GLS executor [2c86b79a4] [97fc49c09]
• Refactor AWS batch job def creation [89ce364c9] [986894287]
• Fix Default plugin version lookup [e0c8151d9]
• Fix Negative labels do not work as expected #2155 [491191811]
• Fix PublishDir overwriting task output files [190aa4eaf]
• Fix directory deletion strategy [b96fcedc8]
• Fix Implicit variable projectDir breaks caching #2186 [76417d273]
• Fix Prevent empty download array [9492cde5d]
• Fix output unstage with glob pattern [2d4c3dfcf]
• Fix Connection-reset crashes the workflow [3ee4fd0eb] [1400ded6d] [61bbc240a] [175c66584]
• Fix Slurm does not send soft kill message #2163 [f0ccfc7e8]
• Fix storeDir directive does not work with S3 #2141 [2e95a6a76]
• Fix maven local publish [05cfb7cf7]
• Fix GLS transfer attempts opts [f7c705db5]
• Fix build exportClasspath task [88d27f0c8]
• Fix PbsPro clusterOptions directive priority #2036 [75e3f225e]
• Disallow include nested within a workflow block [7dbf64bea]
• Upgrade AWS SDK minor version #2167 [296afaa8f]
• Improve gsutil transfer throughput [2da120b91]
• Improve config error reporting [6aa102430]

• Add support for using mamba with conda (#2030) [10c8385b]
• Add AWS cli native error fail-over [fd7670ef]
• Add support for Container Registry to Az Batch executor (#2078) [12bf2da6]
• Add support for Tower workspace (#2097) [8a4dd3ab]
• Add support custom service account email in Google Cloud LifeSciences executor (#2044) [a642c9ea]
• Add support for Java 16 + Gradle 7 [caace1c5] [e2dd4510] [74e466e0] [1245ab1c] [bfc69fb6]
• Improve tower client error reporting [4efb6bf6]
• Fix Plugin install lock file is not deleted #2103 [b7fdffac]
• Fix Use caller runs policy of default thread pool #2021 [48b4e8ee]
• Fix Error reporting for malformed config [68e5ca18]
• Decrease max par transfers to 4 [c7ea816a]
• Prevent fetching aws instance type when missing container id [f5f96049]
• Use default opts for trace file creation [d8ae94bf]
• Improve Azure Batch executor error code and messages for failed Tasks (#2099) [1d5fa5d5]
• Bump groovy 3.0.8 [aa695e12]
• Bump [email protected] [8d361954]

• Fix nested params file parse #2091
• Fix Malformed config error reporting #2105
• Fix Use default opts for trace file creation [09e6c6ac]

• Fix NPE when AWS Batch job container is not returned [412b6fde]
• Fix execution hang when native task fail to submit #2060 [1253485d]
• Update preview message [e1eebdcd]
• Fix nf-ignite all packaging [72b6a428]
• Fix GS failing tests [be4f91e9]
• Fix AWS batch executor fails when using self-contained distribution #2058 [2e344c18]
• Fix groupTuple sort criteria with closure #2020 [28a579a9]
• Patch invalid double number cli parsing #2039 [4de4670c] [dcadaaeb]
• Update sphinx_rtd_theme 0.5.2 [4a165f43]
• Disable cpus option when running docker with legacy opt [1a7854a5]

21.04.0-edge - 8 Apr 2021

• Add readOnly flag to k8s volume mounts (#2013) [33bd24ac]
• Add Start default plugins on-demand #1964 [cf2a9d73]
• Add support for tower workspaceId [e2977688]
• Improve suppor for BitBucket server repos [eb946e27]
• Fix toInt/Long/Float/Double operator hangs with value channel [7c35d985]
• Fix regression caused by nested params handling #1923 [b25af49b]
• Fix Cache invalidation when repo is cloned between runs #1989 [ac526f38]
• Fix Invalid setting of TMP var with singularity #1997 [23f80121] [472cfbdd]
• Fix issue overriding nested params from cli #1923 [cfe6b1d1]
• Fix az path handling curly brackets globs #1969 [c78a1bbf]
• Fix Missing git credentials when checking last commit id [f101308e]
• Fix plugins version check against local installation [535c2bb5]
• Fix local dependant formatting #1962 [2a5cbac1]
• Fix Encode path parameter at GitLab getContentUrl [6f80f651]
• Fix Only use sudo rm with docker #1956 [f9490423]
• Prevent AZ NPE when missing vmtype + better logging #1992 [711362ca]
• Refactor params file var binding #1860 #1972 [330f044a]
• Prevent jobs names longer than 100 chars OAR exec [6daa21b9]
• Bump [email protected] + [email protected] [aff1d355]
• Bump [email protected] - [email protected] - solve #1830 [b3b221c1]
• Bump [email protected] [29fdd9f7]
• Bump [email protected] + [email protected] [c638af80]
• Bump [email protected] [07c59946]

21.03.0-edge - 5 Mar 2021

• Add support for serializable ValueObject [8dfaadf3]
• Add abilitity to fetch revisioned git assets
• Add support for FixOwnership to AWS batch [24f83741]
• Add support for custom network to GLS #1810 [171f4aa8]
• Add ability to handle list of az vm types [00ced0b3]
• Add tower config scope to docs #1890 f2bd96fa
• Add charliecloud container environment from file (#1909) 4553648b
• Add azcopy tool install mode opts [9e9337d3]
• Update Az default vm type to Standard_D4_v3 [4c6e76b6]
• Update NF console dependency [a2d06e15]
• Remove CDN from timeline reports and make them offline readable #1927 [c0e5a941]
• Fix plugins install failing in some file systems #1882 [8cc43391]
• Fix catch failing commands in nxf_parallel #1884 [dd56f6c1]
• Fix missing error on empty process script [3607f84e]
• Fix GSL path de-serialization issue [c6cf784f]
• Fix Memory unit cannot be a negative number #1902 [abd1c9d9]
• Fix pod spec labels to start with numbers in addition to alphas [79740edf]
• Fix OAR executor log files #1761 [6f2ff4e4]
• Fix issue cause by sleep with subsecond argument [c4be8d00] [63974ac6]
• Fix az blob storage SAS permissions [18a33213]
• Fix sort human-readable tasks in report [6d68f28d]

21.02.0-edge - 1 Feb 2021

• Fix Issue when merging nested cli params #1856 [275e54c4] [fe37da6d]
• Fix job status detection on PBS pro #1840 [c1598908]
• Fix Issue when merging nested cli params #1856 (19 hours ago)
• Revert the CPU/memory options being passed to singularity VM instead of singularity container [0d04e0f9]
• Add ability to specify plugins with cli [de91218f]
• Decrease upload/download process polling to 0.2secs [6ca2d6ca]
• Remove nf-amazon as default [e6810e90]
• Make plugin services singleton [cacd9328] [5787be6d]
• Make repository provider accessible to subclasses [988bccc6]
• Fix error on plugin downloading #1859 [77cabb3c]

21.01.1-edge - 15 Jan 2021

• Plugins stability improvements [8d849ec9] [bf093826]
• Charliecloud improvements [2242411a]
• Fix issue of FS discovery with dyn plugin loading [bf5e86df]
• Fix crash on startup when mem reported < 0 [095236b8]
• Fix and stability [e4b8afb5]
• Fix launcher on Java11 [c6b78034]
• Add plugins custom version manager (4 days ago)
• Improve NF version checking [d33ea642]
• Bump plugins minor upgrade [f91bc21e]

21.01.0-edge - 04 Jan 2021

• Merge plugins feature [d959bfdb]
• Prevent twice access remote scm file [b2798556]
• Fix DAG edges not connected correctly #1486 [cece1161]
• Fix k8s executor must provide cpu resource requests #1570 [6896e923]
• Fix http/ftp read buffer size [a2886baf]
• Add support for OAuth Bearer auth [5823c280]
• Add support for basic auth for http/s file provider [6027fcba]
• Add User-Agent info to httpfs requests [222637de]
• Update CPU and RAM for containers (#1833) [ccf5c8ba]
• Move test containes to quay.io [7db053eb] [773be707] [c10a7f53]

20.12.0-edge - 12 Dec 2020

• Add support for charliecloud container engine #1809
• Fix glitch on K8s task progress update [668434f6]
• Upgrade to groovy 3.0.7 [27056035]

20.11.0-edge - 16 Nov 2020

• Fix Allow nextflow to handle http protocol for Singularity images #1791
• Fix params-file overrides config parameters [b03efcac]
• Fix println failing test #1621 [8c6f0f97] [9d2e5850]
• Let output env variables be optional (#1740) [3fca3655]
• Add stub-run feature #1774 [3de45c22] [e2d6d55b]
• Add overwrite option to trace/time/report/dag features #813 [a0615474]
• Allow nested CLI params #1182 [19ab8a8f] [df6204e3]
• Allow setting google projectId in nextflow config [223b5d6c]
• Make binDir accessible from the executor scope [1405a28f]

• Add readOnly flag to k8s volume mounts (#2013) [33bd24ac]
• Add Start default plugins on-demand #1964 [cf2a9d73]
• Add support for tower workspaceId [e2977688]
• Improve suppor for BitBucket server repos [eb946e27]
• Fix toInt/Long/Float/Double operator hangs with value channel [7c35d985]
• Fix regression caused by nested params handling #1923 [b25af49b]
• Fix Cache invalidation when repo is cloned between runs #1989 [ac526f38]
• Fix Invalid setting of TMP var with singularity #1997 [23f80121] [472cfbdd]
• Fix issue overriding nested params from cli #1923 [cfe6b1d1]
• Fix az path handling curly brackets globs #1969 [c78a1bbf]
• Fix Missing git credentials when checking last commit id [f101308e]
• Fix plugins version check against local installation [535c2bb5]
• Fix local dependant formatting #1962 [2a5cbac1]
• Fix Encode path parameter at GitLab getContentUrl [6f80f651]
• Fix Only use sudo rm with docker #1956 [f9490423]
• Prevent AZ NPE when missing vmtype + better logging #1992 [711362ca]
• Refactor params file var binding #1860 #1972 [330f044a]
• Prevent jobs names longer than 100 chars OAR exec [6daa21b9]
• Bump [email protected] + [email protected] [aff1d355]
• Bump [email protected] - [email protected] - solve #1830 [b3b221c1]
• Bump [email protected] [29fdd9f7]
• Bump [email protected] + [email protected] [c638af80]
• Bump [email protected] [07c59946]

• Add support for serializable ValueObject [8dfaadf3]
• Add abilitity to fetch revisioned git assets
• Add support for FixOwnership to AWS batch [24f83741]
• Add support for custom network to GLS #1810 [171f4aa8]
• Add ability to handle list of az vm types [00ced0b3]
• Add tower config scope to docs #1890 f2bd96fa
• Add charliecloud container environment from file (#1909) 4553648b
• Add azcopy tool install mode opts [9e9337d3]
• Update Az default vm type to Standard_D4_v3 [4c6e76b6]
• Update NF console dependency [a2d06e15]
• Remove CDN from timeline reports and make them offline readable #1927 [c0e5a941]
• Fix plugins install failing in some file systems #1882 [8cc43391]
• Fix catch failing commands in nxf_parallel #1884 [dd56f6c1]
• Fix missing error on empty process script [3607f84e]
• Fix GSL path de-serialization issue [c6cf784f]
• Fix Memory unit cannot be a negative number #1902 [abd1c9d9]
• Fix pod spec labels to start with numbers in addition to alphas [79740edf]
• Fix OAR executor log files #1761 [6f2ff4e4]
• Fix issue cause by sleep with subsecond argument [c4be8d00] [63974ac6]
• Fix az blob storage SAS permissions [18a33213]
• Fix sort human-readable tasks in report [6d68f28d]

• Fix Issue when merging nested cli params #1856 [275e54c4] [fe37da6d]
• Fix job status detection on PBS pro #1840 [c1598908]
• Fix Issue when merging nested cli params #1856 (19 hours ago)
• Revert the CPU/memory options being passed to singularity VM instead of singularity container [0d04e0f9]
• Add ability to specify plugins with cli [de91218f]
• Decrease upload/download process polling to 0.2secs [6ca2d6ca]
• Remove nf-amazon as default [e6810e90]
• Make plugin services singleton [cacd9328] [5787be6d]
• Make repository provider accessible to subclasses [988bccc6]
• Fix error on plugin downloading #1859 [77cabb3c]