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Published by samuell about 3 years ago
This release contains an important bugfix, making sure that we properly handle all errors (#146).
It also contains a minor API change, that could affect custom components making use of the AtomizeIPs()
method, which is now renamed to FinalizePaths()
.
Published by samuell about 3 years ago
This release fixes a bug where some errors were not properly handled and reported on finalizing paths.
Published by samuell about 3 years ago
This Release Candidate fixes an erroneous error message in the concatenator component, that might result in confusion when debugging.
Published by samuell about 3 years ago
This release fixes a behavior in the globber component, making sure that it waits for all its dependencies to arrive before globbing.
Published by samuell about 3 years ago
Try to fix #143: Fix problem with creating directories in concatenator
This is a pre-release, release candidate.
Published by samuell about 3 years ago
This is a small bugfix release, fixing bug #142 about a potential collision between TempDir paths.
Published by samuell about 3 years ago
This is a rather small release, which fixes issue #134 and improves logging, by making sure that more context information, such as process, task, workflow or file-IP name is included wherever applicable.
It increases more than the most minor part in the version since it contains some smaller breaking changes, in particular that the NewFileIP() constructor returns errors instead of failing the program locally (this is, as you might have guessed, part of the move towards logging errors in a place with more context available).
Published by samuell over 3 years ago
This is a small release fixing issue #135.
Published by samuell over 3 years ago
Published by samuell over 3 years ago
This release fixes bug #130. Read more in the bug description for info about this. We are bumping to 0.10.0 as this is potentially a breaking change for workflows already using the basename modifier.
Published by samuell over 3 years ago
This release contains a bugfix for #125 which was recently introduced as part of the fix for #66. This release fixes #125 by allowing multiple occurances of the same port-type/port-name combo, but not the same port-name for different types.
Published by samuell over 3 years ago
This is a fix of the incorrectly fixed error in #54 . See Release v0.9.12 for more info on what is new.
Published by samuell over 3 years ago
This release contains a number of somewhat important bugfixes, for stability and robustness of workflows:
../../somedir/somefile.txt
).Published by samuell over 3 years ago
This is a small release, fixing issue #111 (Make channel buffert size configurable via environment variable).
This is documented here.
Published by samuell about 4 years ago
This release includes implementation of the dirname
modifier (see info about modifiers here).
Kudos to @szliao for this contribution!
Published by samuell about 4 years ago
This is a small release containing one new enhancement, and a bug fix, both in the Concatenator component:
Published by samuell about 4 years ago
This release mainly fixes issue #71 , where a workflow could not run if it contained just a single process.
Many thanks to @kerkomen for contributing the fix!
Published by samuell about 4 years ago
This is a bug fix release, fixing a number of bugs: #93, #104, #105, #106
The biggest change is that path modifiers such as basename
and %.ext
for trimming file name extensions, are now available for all placeholders in the main command as well as in the SetOut()
function.
The available modifiers are now documented here in the docs: Available path modifiers
It also now has support for go modules (a simple change, as scipipe has zero dependencies :)).
Thanks to @dwmunster for some contributions, and @jonalv for providing input leading to discovering most of, the fixes in this release.
Published by samuell about 5 years ago
This release:
With these fixes, the DNA Cancer Analysis demo from the SciPipe paper, which was broken, does now work again!
Many thanks for the contribution guys - it's so much appreacated! 🙌
Published by samuell over 5 years ago
This is an bugfix release:
select
based task processingAgain, big thanks go to @dwmunster for contributing these fixes and improvements!