molgenis

MOLGENIS - for scientific data: management, exploration, integration and analysis.

LGPL-3.0 License

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molgenis - 8.3.5

Published by fdlk over 4 years ago

Bugfixes:

#8932 Letting a role include itself will break the application
#8936 Mapping service attribute search broken when no ontologies

molgenis - 8.3.3-RC

Published by sidohaakma over 4 years ago

molgenis - 8.3.2-RC

Published by sidohaakma over 4 years ago

molgenis - 8.3.1-RC

Published by sidohaakma over 4 years ago

molgenis - 8.3.4

Published by sidohaakma over 4 years ago

Names

Package identifiers, Entity Type identifiers, Group names and Role names now all share the same restrictions:

  • may contain lower- and uppercase letters
  • may contain digits
  • may contain dashes (-)
  • may contain underscores (_)

When you create a group, the package and role identifiers that are generated will have a different format. External code that depends on these identifiers might have to be updated. When migrating from 8.2 to 8.3, existing identifiers will not change.

Features

  • M6336 Automatically create groups for root packages
  • M6763 Metadata API v3
  • Performance improvements

Bugfixes

#6811 V2 api does not support '=in=' operator for specific attributes
#8674 ACL error when importing to non-existing entity type
#8675 Index dependency model entity type fetch
#8733 Faulty metadata manager exception handler
#8815 Paged API response incorrect on out-of-bounds page request
#8661 API requests with unknown sort results in 500
#8790 Package delete can fail
#8675 Various performance improvements
#7031 Bootstrapper system package delete fails
#8849 SORTA NullPointerException on match start
#8846 Elasticsearch cluster status 'yellow'
#8856 Deep queries broken for entity types with index depth >= 2
#8855 Sub-attribute query broken in data API
#8864 Menu manager broken: missing system role
#8866 Web application doesn't unregister JDBC Driver
#7720 SecurityContext/LocaleContext memory leaks
#8876 Query of type 'search' fails for ref attributes
#8861 Permission API fails silently when trying to POST a permission that already exists
#8888 Permissions API /permissions/ endpoint broken when a resource has int identifiers
#8884 Executor services not shutdown on JVM shutdown
#2763 Session cannot be restored after import
#8883 Import jobs reported running after restart

Other

  • Improved single sign-on documentation
  • Removed Google Analytics opt-out

Note: upgrading to this version will automatically create groups (without members) for user root packages that are not associated with a group.

molgenis - 8.3.0-RC

Published by sidohaakma over 4 years ago

molgenis - 8.2.1

Published by fdlk almost 5 years ago

Release

IMPORTANT: Frontend code is not served in this release anymore. You need additional proxy configuration for your webserver. Check: RPM deployment.

Features

  • M6583 Deprecate GET /api/v2/version in favor of OPTIONS /api
  • Updated activation email
  • M6778 With OpenID Connect enabled, local login is hidden behind a button
  • M6276 Data API v3 (unstable API)
  • Rename entity report view all -> back button

Bugfixes

  • #8520 removing data value in the forms does not work
  • #8521 Import error message unknown attribute
  • #8513 When you have an account on a server sign in screen always shown, instead of homepage
  • #8471: Settings cog still opens old form
  • #8423: Footer text differs per plugin: 2018 paper reference missing
  • #8660: Add note about the fact a group needs to be added.
  • #8695 Slow performance retrieving data for non-superusers
  • #8574 Poor performance adding to row-level secured entity type
  • Template expression performance improvements

Dependency changes

Upgrade spring-boot-starter-parent 2.1.3.RELEASE to 2.1.5.RELEASE

molgenis - 8.2.3

Published by fdlk almost 5 years ago

Bugfixes

  • #8740 Menu returned by context api is not filtered
molgenis - 8.2.4

Published by fdlk almost 5 years ago

Features

  • Add user information to context endpoint

Bugfixes

  • #8761 Context api help link is not usable
molgenis - 8.2.2-RC

Published by sidohaakma almost 5 years ago

molgenis - 8.2.0-RC

Published by sidohaakma almost 5 years ago

molgenis - 8.1.8

Published by sidohaakma over 5 years ago

Features

  • Added configurable OpenCPU properties to RPM

Bugfixes

  • #8548 redirect plugin can redirect to URLs that are not present in the menu
  • Fix ownership on molgenis-server.properties
  • Add the skeleton configuration files to home of molgenis
  • Fix default values for Minio to make MOLGENIS boot in one go
molgenis - 8.1.6

Published by sidohaakma over 5 years ago

Bugfixes

  • Removed "autoclose" and "release" options from molgenis-app pom.xml to overcome difficulties on sonatypes behalve
molgenis - 8.0.5

Published by sidohaakma over 5 years ago

Features

  • Added default configuration for OpenCPU

Bugfixes

  • Updated default configuration for Minio
  • Updated owner for molgenis-server.properties to molgenis
molgenis - 8.1.7

Published by sidohaakma over 5 years ago

Bugfixes

  • Updated rights to war to make sure tomcat-user can execute it
  • #8037: Application can boot with NoSuchBeanDefinitionException
  • #8511: Index manager is still present in default menu
molgenis - 8.0.3-RC

Published by sidohaakma over 5 years ago

molgenis - 8.0.3-RC

Published by sidohaakma over 5 years ago

molgenis - 8.0.1-RC

Published by sidohaakma over 5 years ago

molgenis - 8.0.0-RC

Published by sidohaakma over 5 years ago

molgenis - 7.4.3-RC

Published by sidohaakma over 5 years ago