BioMarkovChains.jl

BioMarkovChains v0.10.1

Diff since v0.10.0

Merged pull requests:

• Update the log_odds_ratio_score and log_odds_ratio_matrix (#29) (@camilogarciabotero)

BioMarkovChains v0.10.0

Diff since v0.9.3

Merged pull requests:

• Bump julia-actions/setup-julia from 1 to 2 (#26) (@dependabot[bot])
• Update index.md: Add "Get Started" section and update package installation instructions (#27) (@camilogarciabotero)

BioMarkovChains v0.9.3

Diff since v0.9.2

BioMarkovChains v0.9.2

Diff since v0.9.1

BioMarkovChains v0.9.1

Diff since v0.9.0

Merged pull requests:

• Refine tests and some refactors (#22) (@camilogarciabotero)
• Update tcm methods to new VK version (#25) (@camilogarciabotero)

BioMarkovChains v0.9.0

Diff since v0.8.1

Merged pull requests:

• Refactor BioMarkovChain struct to be BioJulia compliant using correct alphabet types (#21) (@camilogarciabotero)

BioMarkovChains v0.8.1

Diff since v0.8.0

Merged pull requests:

• Refactor tcm to work with AAs again (#20) (@camilogarciabotero)

BioMarkovChains v0.8.0

Diff since v0.7.0

Merged pull requests:

• Improve BMC struct correctness and other features (#18) (@camilogarciabotero)

BioMarkovChains v0.7.0

Diff since v0.6.0

Merged pull requests:

• Update main BMC struct (#17) (@camilogarciabotero)

BioMarkovChains v0.6.0

Diff since v0.5.0

Merged pull requests:

• Bump actions/checkout from 3 to 4 (#11) (@dependabot[bot])
• CompatHelper: bump compat for MarkovChainHammer to 0.0.10, (keep existing compat) (#12) (@github-actions[bot])
• CompatHelper: bump compat for VectorizedKmers to 0.6, (keep existing compat) (#13) (@github-actions[bot])
• Exploring the log-odds ratio and other methods (#16) (@camilogarciabotero)

BioMarkovChains v0.5.0

Diff since v0.4.1

Merged pull requests:

• Improve BMC interface (#7) (@camilogarciabotero)

BioMarkovChains v0.4.1

Diff since v0.4.0

Merged pull requests:

• clean internals and simplify implementations (#6) (@camilogarciabotero)

BioMarkovChains v0.4.0

Diff since v0.3.0

Merged pull requests:

• Adding a random method and clean docs (#5) (@camilogarciabotero)

BioMarkovChains v0.3.0

Diff since v0.2.1

Merged pull requests:

• Refactoring BioMarkovChain type and docs (#4) (@camilogarciabotero)

BioMarkovChains v0.2.1

Diff since v0.2.0

Merged pull requests:

• Expanding alphabet to Markov chains (#3) (@camilogarciabotero)

Full Changelog: https://github.com/camilogarciabotero/BioMarkovChains.jl/commits/v0.1.1

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