Open-source, graph-based Python code generator and analysis toolbox for dynamical systems (pre-implemented and custom models). Most pre-implemented models belong to the family of neural population models.
GPL-3.0 License
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Published by Richert over 2 years ago
Published by Richert over 2 years ago
Published by Richert over 2 years ago
log
as a new backend function that can be used within equations nowto_yaml
methodsPublished by Richert over 2 years ago
Published by Richert over 2 years ago
CircuitTemplate
raised an error for scalar-valued modelsPublished by Richert over 2 years ago
CircuitTemplate.to_yaml
method that allows to save a given CircuiTemplate
instance to a YAML definition fileCircuitTemplate.add_edges_from_matrix
method that allows to connect nodes in a CircuiTemplate
instance via connectivity matricesPublished by Richert almost 3 years ago
Published by Richert almost 3 years ago
This release presents comes with the following changes:
Full Changelog: https://github.com/pyrates-neuroscience/PyRates/compare/v.0.9.6...v0.10.0
Published by Richert over 3 years ago
CircuitIR._add_edge_buffer()
was re-worked, such that the algorithm that translates gamma-kernel convolutions for edges into ODE systems is more transparent and computationally less expensiveCircuitIR._add_edge_buffer()
Published by Richert over 3 years ago
Published by Richert over 3 years ago
grid_search
, no matter how that node was definedPublished by Richert over 3 years ago
Published by dafrose over 4 years ago
yaml
, pickle
pyrates.utility.__init__.py
for increased stability.pyrates.utility
, would have required a user to install optional packages thatpyrates.utility
tests
that includes all packages necessary to run the tests.CircuitTemplate.apply()
in order to adapt values of variables on the fly. ThisPublished by dafrose over 4 years ago
Published by dafrose almost 5 years ago
EdgeTemplate
instead of a template path, previous behaviour is unaffected._format
along until the endPublished by dafrose almost 5 years ago
pyrates.utility.grid_search
pyrates.utility.genetic_algorithm
Published by dafrose about 5 years ago
mynode
mynode.0
and will now keep it's original label.CircuitIR
now has a .compile
method that performs all vectorization and transformation into the computableVectorizedNodeIR
that have labels like vector_nodeX
withlabel_map
dictionary attribute of the CircuitIR
all
tomysubcircuit1/all/mynode
will get all nodes with labelmynode
that are in one level of sub-circuits below mysubcircuit
.tensorflow-2.0-rc
extras_require
in setup.pyPublished by dafrose over 5 years ago
Published by dafrose over 5 years ago
Published by dafrose over 5 years ago