anndata2ri

• [#126] Fix int csr_matrix (@flying-sheep)

Bugfixes

• [#130] Fix rpy2 dependency specification (@flying-sheep)

Features

• [#116] Make anndata2ri.converter the full thing (@flying-sheep)

Infrastructure

• [#116] Make tests warning-free(@flying-sheep)
• [#119] Fix docs (@flying-sheep)
• [#115, #121] Enforce formatting (@flying-sheep)

Features

• [#82] Better matrix conversion errors (@flying-sheep)
• [#95] DataFrames work in obsm, X and layers (@flying-sheep)
• [#114] Support converting bool matrices (@flying-sheep)

Fixes

• [#91] Replace deprecated rpy2.robjects.conversion.converter (@scottgigante-immunai)

Infrastructure

• [#106] Modernize CI
• [#112] Switch to Ruff

Features

• [#80] Upgrade rpy2 to >= 3.4.3 by (@scottgigante-immunai)

Infrastructure

• [#72] Move CI to GitHub Actions (@scottgigante-immunai)
• [#73] Reorganize and add pre-commit (@flying-sheep)
• [#75] Fix deploy and bust cache (@flying-sheep)
• [#81] Fix docs (@flying-sheep)

• [#60] Use new scRNAseq package and fix rpy2 3.4 compat

• [#56] Always populate module when users import it
• [#56] Provide doc links and improved docstrings

• [#52] Sort indices prior to conversion from csr/csc matrices to avoid

  invalid class “dgRMatrix/dgCMatrix” object: slot j/i is not increasing inside a column

• [#53] Harden generic function converting SexpS4 objects when they’re objects, by allowing dim(object) to return NULL.

• [#49] Converts OverLoadedDicts introduced in theislab/anndata#337 (anndata 0.7.2)

• [#41] Factors in rowData/colData are now correctly converted to categoricals
• [#41] Caching R packages speeds up everything a bit

First working version with basic support for X, obs, and var

• Add a README
• [#13] Support scipy types (sparse matrices)
• [51338b8] Support uns
• [fcc8ea9] Support obsm↔reducedDims
• [ceca16a] Support obs_names/var_names
• Tons of other fixes

• [#36] README improvements
• [#37] Travis CI works
• [#37] BioConductor 3.10 is supported (S4Vectors renamed its “DataFrame” to “DFrame”)