hdbscan

Pin numpy<2 for now since this breaks builds.

Full Changelog: https://github.com/scikit-learn-contrib/hdbscan/compare/release-0.8.35...release-0.8.36

What's Changed

• Update so it will compile with numpy 2.0 (hopefully)
• Typo fix in docs/parameter_selection.rst by @Daniel-Mietchen in https://github.com/scikit-learn-contrib/hdbscan/pull/632
• correct typo in variable declaration by @cearlefraym in https://github.com/scikit-learn-contrib/hdbscan/pull/635

New Contributors

• @Daniel-Mietchen made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/632
• @cearlefraym made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/635

Full Changelog: https://github.com/scikit-learn-contrib/hdbscan/compare/release-0.8.34-rc1...release-0.8.35

What's Changed

• Update validity.py by @armenbod in https://github.com/scikit-learn-contrib/hdbscan/pull/580
• Wheel publish github action by @Rhaedonius in https://github.com/scikit-learn-contrib/hdbscan/pull/604
• Build platform dependent wheel files by @gclendenning in https://github.com/scikit-learn-contrib/hdbscan/pull/606
• Fixed DeprecationWarning in hdbscan/hdbscan_.py by @gerald-ftk in https://github.com/scikit-learn-contrib/hdbscan/pull/612
• Add .readthedocs.yaml to fix failing docs build issue. by @chenxinye in https://github.com/scikit-learn-contrib/hdbscan/pull/619

New Contributors

• @armenbod made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/580
• @gerald-ftk made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/612
• @chenxinye made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/619

Full Changelog: https://github.com/scikit-learn-contrib/hdbscan/compare/0.8.33...release-0.8.34-rc1

Hopefully the last round of patches to work around recent issues introduced by a newer release of Cython

Cython 3 introduces a number of issues; prevent using Cython 3 for compilation until we've worked through all the changes required.

Resolve recent build issues with full module name resolution

Full Changelog: https://github.com/scikit-learn-contrib/hdbscan/compare/0.8.30...0.8.31

What's Changed

• Changes to support scikit-learn 1.3
• Fix typo in docstring by @yoavram in https://github.com/scikit-learn-contrib/hdbscan/pull/573
• Set seed for generating noisy data by @gclendenning in https://github.com/scikit-learn-contrib/hdbscan/pull/594

New Contributors

• @yoavram made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/573
• @gclendenning made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/594

Full Changelog: https://github.com/scikit-learn-contrib/hdbscan/compare/0.8.29...0.8.30

What's Changed

• Fix malformed list in docs by @dmlls in https://github.com/scikit-learn-contrib/hdbscan/pull/535
• Incorrect initialization in BallTreeBoruvka dual_tree_traversal by @GregDemand in https://github.com/scikit-learn-contrib/hdbscan/pull/508
• hdbscan: add support to other types of input integers by @jcfaracco in https://github.com/scikit-learn-contrib/hdbscan/pull/540
• Add parameter to DBCV which toggles the usage of mutual reachability distances by @luis261 in https://github.com/scikit-learn-contrib/hdbscan/pull/552
• Fixed: validity index no longer returning nan by @tadorfer in https://github.com/scikit-learn-contrib/hdbscan/pull/558
• Use a positional argument for the cachedir/location by @lmcinnes in https://github.com/scikit-learn-contrib/hdbscan/pull/563

New Contributors

• @dmlls made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/535
• @jcfaracco made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/540
• @luis261 made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/552
• @tadorfer made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/558
• @lmcinnes made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/563

Full Changelog: https://github.com/scikit-learn-contrib/hdbscan/compare/0.8.28...0.8.29

Resync release tags with PyPI

What's Changed

• Added axis control on colourbars by @tomcharnock in https://github.com/scikit-learn-contrib/hdbscan/pull/365
• Fixing typos by @cassmarcussen in https://github.com/scikit-learn-contrib/hdbscan/pull/366
• Predict score by @Rhaedonius in https://github.com/scikit-learn-contrib/hdbscan/pull/368
• fix issue 370 by @neontty in https://github.com/scikit-learn-contrib/hdbscan/pull/371
• fix the core distance computation can only use 4 cores. by @GorvinChen in https://github.com/scikit-learn-contrib/hdbscan/pull/377
• Issue 370 by @neontty in https://github.com/scikit-learn-contrib/hdbscan/pull/385
• Fixed line widths for single linkage dendrograms with duplicate lambda_val by @GregDemand in https://github.com/scikit-learn-contrib/hdbscan/pull/391
• Module for flat clustering by @sabarish-akridata in https://github.com/scikit-learn-contrib/hdbscan/pull/398
• Improved union-find data structure implementation by @kylehofmann in https://github.com/scikit-learn-contrib/hdbscan/pull/412
• fixes #370 -- epsilon search would crash when root node in leaf list by @neontty in https://github.com/scikit-learn-contrib/hdbscan/pull/400
• let root children size==1 to join root node in allow_single based on 1/eps by @neontty in https://github.com/scikit-learn-contrib/hdbscan/pull/418
• fix issue-436 unused deprecated joblib option by @neontty in https://github.com/scikit-learn-contrib/hdbscan/pull/438
• Fix build errors by @gansanay in https://github.com/scikit-learn-contrib/hdbscan/pull/449
• update build by @gansanay in https://github.com/scikit-learn-contrib/hdbscan/pull/450
• Fix mismatching clusters probabilities in softclustering by @narjes23 in https://github.com/scikit-learn-contrib/hdbscan/pull/454
• Fixing typos in "Don't be wrong!" section by @hovikgas in https://github.com/scikit-learn-contrib/hdbscan/pull/455
• Update pyproject.toml to use oldest-supported-numpy by @stradigi-mario-bruno in https://github.com/scikit-learn-contrib/hdbscan/pull/458
• Fix numpy 1.20 deprecation warnings by @rmcgibbo in https://github.com/scikit-learn-contrib/hdbscan/pull/468
• max_cluster_size parameter by @Rocketknight1 in https://github.com/scikit-learn-contrib/hdbscan/pull/410
• Fix typos by @julienschuermans in https://github.com/scikit-learn-contrib/hdbscan/pull/489
• handle non-finite valued vectors by @jc-healy in https://github.com/scikit-learn-contrib/hdbscan/pull/497
• Fixed the bug that joblib uses memory mapping when data size is too large by @ginward in https://github.com/scikit-learn-contrib/hdbscan/pull/495
• Fix ZeroDivisionError: float division error when computing per_cluster_scores by @Dicksonchin93 in https://github.com/scikit-learn-contrib/hdbscan/pull/502
• Update requirements.txt by @Ben-Epstein in https://github.com/scikit-learn-contrib/hdbscan/pull/503
• Fixed off by one errors in min_samples for multiple algorithms by @GregDemand in https://github.com/scikit-learn-contrib/hdbscan/pull/394
• Modified Prims to generate MST by @pberba in https://github.com/scikit-learn-contrib/hdbscan/pull/315
• Remove usage of six by @rahulporuri in https://github.com/scikit-learn-contrib/hdbscan/pull/516
• dbscan cluster extraction by @jc-healy in https://github.com/scikit-learn-contrib/hdbscan/pull/519

New Contributors

• @tomcharnock made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/365
• @cassmarcussen made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/366
• @Rhaedonius made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/368
• @neontty made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/371
• @GorvinChen made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/377
• @GregDemand made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/391
• @sabarish-akridata made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/398
• @kylehofmann made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/412
• @gansanay made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/449
• @narjes23 made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/454
• @hovikgas made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/455
• @stradigi-mario-bruno made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/458
• @rmcgibbo made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/468
• @Rocketknight1 made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/410
• @julienschuermans made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/489
• @jc-healy made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/497
• @ginward made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/495
• @Dicksonchin93 made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/502
• @Ben-Epstein made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/503
• @pberba made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/315
• @rahulporuri made their first contribution in https://github.com/scikit-learn-contrib/hdbscan/pull/516

Full Changelog: https://github.com/scikit-learn-contrib/hdbscan/compare/0.8.26...0.8.27