pango-designation

Repository for suggesting new lineages that should be added to the current scheme

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pango-designation - pango-designation v1.2.130

Published by chrisruis over 2 years ago

  • Added new lineage BA.1.16 with 7687 sequence designations
  • Added new lineage BA.1.16.1 with 63 sequence designations
  • Added new lineage BA.1.17 with 8434 sequence designations
  • Added new lineage BA.1.17.1 with 309 sequence designations
  • Added new lineage BA.1.1.1 with 6023 sequence designations
  • Added new lineage BC.1 with 1000 sequence designations
  • Added new lineage BA.1.1.2 with 6244 new sequence designations and 3 updated from BA.1.1
  • Added new lineage BA.1.1.3 with 291 new sequence designations
  • Added new lineage BA.1.1.4 with 791 new sequence designations and 1 updated from BA.1.1
  • Added new lineage BA.1.1.5 with 106 new sequence designations
  • Added new lineage BA.1.1.6 with 352 new sequence designations and 1 updated from BA.1.1
  • Added new lineage BA.1.1.7 with 233 new sequence designations
  • Added new lineage BA.1.1.8 with 381 new sequence designations and 2 updated from BA.1.1
  • Added new lineage BA.1.1.9 with 228 new sequence designations
  • Added new lineage BA.1.1.10 with 1146 new sequence designations
  • Added new lineage BA.1.1.11 with 1990 new sequence designations and 4 updated from BA.1.1
  • Added new lineage BA.1.1.12 with 1929 new sequence designations
  • Added new lineage BA.1.1.13 with 4146 new sequence designations and 2 updated from BA.1.1
  • Added new lineage BA.1.1.14 with 6395 new sequence designations and 4 updated from BA.1.1
  • Added new lineage BA.1.1.15 with 6343 new sequence designations and 2 updated from BA.1.1
  • Added new lineage BA.1.1.16 with 1020 new sequence designations
pango-designation - pango-designation v1.2.129

Published by chrisruis over 2 years ago

  • Withdrew lineage AY.96 based on discussion in #435
pango-designation - pango-designation v1.2.128

Published by chrisruis over 2 years ago

  • Added new lineage BA.1.2 with 61 new sequence designations
  • Added new lineage BA.1.3 with 198 new sequence designations
  • Added new lineage BA.1.4 with 183 new sequence designations
  • Added new lineage BA.1.5 with 191 new sequence designations
  • Added new lineage BA.1.6 with 253 new sequence designations
  • Added new lineage BA.1.7 with 473 new sequence designations
  • Added new lineage BA.1.8 with 356 new sequence designations
  • Added new lineage BA.1.9 with 309 new sequence designations
  • Added new lineage BA.1.10 with 1252 new sequence designations
  • Added new lineage BA.1.11 with 310 new sequence designations
  • Added new lineage BA.1.12 with 1862 new sequence designations
  • Added new lineage BA.1.13 with 1522 sequence designations
  • Added new lineage BA.1.13.1 with 1536 sequence designations
  • Added new lineage BA.1.14 with 4539 new sequence designations and 2 updated from BA.1
  • Added new lineage BA.1.15 with 35942 sequence designations
  • Added new lineage BA.1.15.1 with 20043 sequence designations
pango-designation - pango-designation v1.2.127

Published by chrisruis over 2 years ago

  • Added new lineage AY.43.9 with 792 new sequence designations and 6 updated from AY.43
pango-designation - pango-designation v1.2.126

Published by chrisruis over 2 years ago

  • Added new lineage AY.127.2 with 97 new sequence designations
  • Added new lineage AY.5.6 with 23 new sequence designations
  • Added new lineage AY.122.5 with 3496 new sequence designations and 217 updated from AY.122
  • Added new lineage AY.43.8 with 2071 new sequence designations and 797 updated from AY.43
  • Added new lineage AY.25.1.2 with 283 new sequence designations and 8 updated from AY.25.1
  • Added new lineage AY.39.3 with 74 new sequence designations
pango-designation - pango-designation v1.2.125

Published by chrisruis over 2 years ago

  • Added new lineage AY.4.13 with 392 new sequence designations
  • Added new lineage AY.4.14 with 768 new sequence designations
  • Added new lineage AY.4.15 with 1343 new sequence designations
  • Added new lineage AY.4.16 with 170 new sequence designations
  • Added new lineage AY.4.17 with 147 new sequence designations
  • Added new lineage AY.124.1.1 with 190 new sequence designations and 94 updated from AY.124.1
pango-designation - pango-designation v1.2.124

Published by chrisruis over 2 years ago

  • Added new lineage AY.25.2 with 122 new sequence designations
  • Added new lineage AY.103.1 with 138 new sequence designations and 3 updated from AY.103
  • Added new lineage AY.125.1 with 146 new sequence designations and 6 updated from AY.125
  • Added new lineage AY.3.4 with 225 new sequence designations
  • Added new lineage AY.4.11 with 817 new sequence designations
  • Added new lineage AY.4.2.4 with 114 new sequence designations
  • Added new lineage AY.24.1 with 415 new sequence designations
  • Added new lineage AY.103.2 with 521 new sequence designations and 3 updated from AY.103
  • Added new lineage AY.25.3 with 2311 new sequence designations and 15 updated from AY.25
  • Added new lineage AY.4.12 with 605 new sequence designations
  • Added new lineage AY.122.4 with 1293 new sequence designations and 421 updated from AY.122
pango-designation - pango-designation v1.2.123

Published by chrisruis almost 3 years ago

  • Merged AY.89 into AY.4, discussion in #398. AY.89 is therefore withdrawn
pango-designation - pango-designation v1.2.122

Published by chrisruis almost 3 years ago

  • Updated lineage BB.1 to B.1.621.2 as it clusters outside B.1.621.1
  • Added new lineage BA.1.1 from #360 with 417 sequence designations
pango-designation - pango-designation v1.2.121

Published by chrisruis almost 3 years ago

  • Updated version in init.py
  • Added new lineage AY.133 from #380 with 71 new sequence designations
pango-designation - Added new lineage AY.133 from #380 with 71 new sequence designations

Published by InfrPopGen almost 3 years ago

pango-designation - Added new lineage AY.132 from #379 with 305 new sequence designations

Published by InfrPopGen almost 3 years ago

pango-designation - Added new lineage AY.43.7 from #378 with 92 new sequence designations

Published by InfrPopGen almost 3 years ago

pango-designation - pango-designation v1.2.117

Published by chrisruis almost 3 years ago

  • Added new lineages AY.4.9 (613 new sequence designations, 1 updated from AY.4) and AY.4.10 (642 new sequence designations) from #332
  • Added 329 new AY.4 sequence designations based on #332
pango-designation - Added new lineage AY.131 from #373 with 55 new sequence designations

Published by InfrPopGen almost 3 years ago

pango-designation - pango-designation v1.2.114

Published by chrisruis almost 3 years ago

  • Added new lineage AY.127.1 from #352 with 111 sequence designations updated from AY.127
  • Added new lineage AY.123.1 from #354 with 16 new sequence designations and 58 updated from AY.123
  • Added new lineage AY.3.3 from #365 with 109 new sequence designations
  • Added new lineage AY.46.6.1 from #369 with 80 new sequence designations
  • Added new lineage AY.33.1 from #370 with 45 new sequence designations
  • Added new lineage AY.122.3 from #371 with 725 new sequence designations and 104 updated from AY.122
pango-designation - pango-designation v1.2.113

Published by chrisruis almost 3 years ago

  • Merged AY.115 sequences into AY.116 as they now form a single clade
  • Added new lineages BB.1 and BB.2 from #232 with 91 and 238 new sequence designations
  • Added new lineage AY.102.2 from #330 with 57 new sequence designations and 96 updated from AY.102
  • Added new lineage AY.42.1 from #331 with 114 new sequence designations and 126 updated from AY.42
  • Added new lineage AY.39.1.3 from #339 with 571 new sequence designations and 1208 updated from AY.39.1
  • Added new lineage AY.130 from #351 with 60 new sequence designations
pango-designation - pango-designation v1.2.112

Published by chrisruis almost 3 years ago

  • Added new lineage BA.3 from #367 with 5 new sequence designations
pango-designation - pango-designation v1.2.111

Published by chrisruis almost 3 years ago

  • Added new lineage AY.128 from #309 with 327 new sequence designations and 1 updated from B.1.617.2
  • Added new lineage AY.3.2 from #312 with 68 new sequence designations
  • Updated AY.25.1 to a Canada and USA lineage from #313 with 40923 new sequence designations and 394 updated from AY.25. Updated the previous AY.25.1 lineage from #355 to AY.25.1.1
  • Added new lineage AY.43.6 from #315 with 2293 new sequence designations and 411 updated from AY.43
  • Added new lineage AY.102.1 from #325 with 77 new sequence designations and 53 updated from AY.102
  • Added new lineage P.1.7.1 from #326 with 295 new sequence designations and 436 updated from P.1
  • Added new lineage AY.129 from #329 with 5982 new sequence designations
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