pango-designation
Repository for suggesting new lineages that should be added to the current scheme
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Published by chrisruis about 3 years ago
- Withdrew lineage B.59 as it is no longer monophyletic
Published by chrisruis about 3 years ago
- Removed 17 B.1.400 and 1 B.1.402 designations based on #193
Published by chrisruis about 3 years ago
- Added new lineage AY.26 from #188 with 4957 new sequence designations and 95 updated from B.1.617.2
- Added new lineage AY.27 from #196 with 1085 new sequence designations and 7 updated from B.1.617.2
- Added new lineage AY.28 from #199 with 101 new sequence designations and 7 updated from B.1.617.2
Published by chrisruis about 3 years ago
- Added new lineage B.1.243.1 from #169 with 41 new sequence designations
Published by chrisruis about 3 years ago
- Added new lineages Q.6 (122 new sequence designations) and Q.7 (829 new sequence designations) from #183
- Added new lineage Q.8 with 281 new sequence designations from #197
Published by chrisruis about 3 years ago
- Updated sequence designations in B.1.617.2 and AY lineages to remove sequences designated to one of the AY lineages that do not cluster within that lineage and sequences designated B.1.617.2 that are in one of the AY clades. In total, 1946 sequence designations were removed, specifically (as their previous designations) 2 AY.3.1, 1255 AY.4, 77 AY.5, 3 AY.6, 3 AY.7, 25 AY.9, 26 AY.13, 2 AY.14, 2 AY.23, 29 AY.25 and 534 B.1.617.2
Published by chrisruis about 3 years ago
- Added new lineage Q.5 from #165 with 40 new sequence designations
- Added new lineage B.1.1.528 from #177 with 70 new sequence designations and 1 updated from B.1.1.34
- Removed 7 sequence designations that are associated with multiple GISAID identifiers belonging to different lineages (Israel/SMC-7005181/2021, Israel/SMC-7005232/2021, Israel/SMC-7005293/2021, Israel/SMC-7005452/2021, Israel/SMC-7005529/2021, Israel/SMC-7005257/2021, Israel/SMC-7005604/2021)
Published by chrisruis about 3 years ago
- Refinement of B.1.526 based on discussion in #154. This resulted in the addition of new lineage B.1.637 with 36 sequence designations updated from B.1.526 and the designation of 11 sequences being updated from B.1.526 to B.1. From pull request #192
Published by chrisruis about 3 years ago
- Added new lineage AY.25 from #181 with 4269 new sequence designations, 2 updated from AY.6 and 349 updated from B.1.617.2
- Added new lineage P.1.11 from #164 with 10 new sequence designations
- Added new lineage C.39 from #178 with 15 new sequence designations
Published by chrisruis about 3 years ago
- Added new lineages AY.23 (3054 new sequence designations, 63 updated from B.1.617.2) and AY.24 (605 new sequence designations, 34 updated from B.1.617.2) from #175
Published by chrisruis about 3 years ago
- Updated sequence designations from B.1.617.2 to AY.4 (30498 sequences updated), AY.5 (2496 sequences updated), AY.6 (1019 sequences updated), AY.7 (664 sequences updated), AY.8 (631 sequences updated), AY.9 (2541 sequences updated) and AY.10 (367 sequences updated)
- Added new lineages AY.13-AY.22, AY.5.1, AY.5.2, AY.7.1 and AY.7.2. Number of designated sequences in these lineages: AY.13 - 688, AY.14 - 112, AY.15 - 94, AY.16 - 183, AY.17 - 57, AY.18 - 101, AY.19 - 87, AY.20 - 2445, AY.21 - 223, AY.22 - 158, AY.5.1 - 140, AY.5.2 - 183, AY.7.1 - 4624, AY.7.2 - 342
Published by chrisruis about 3 years ago
- Added new lineages P.1.10 (2107 sequence designations, including USA/FL-CDC-FG-010027/2021 updated from P.1), P.1.10.1 (55 new sequence designations) and P.1.10.2 (23 new sequence designations) from #179
Published by chrisruis about 3 years ago
- Added new lineage B.1.636 from #173 with 100 new sequence designations and 1 updated from B.1
- Added new lineage P.1.9 from #174 with 85 new sequence designations
Published by chrisruis about 3 years ago
- Added new lineage Q.4 from #176 with 1841 sequence designations total - 1814 of these are new designations and 27 were updated from B.1.1.7
Published by chrisruis about 3 years ago
- Added new lineage AY.11 with 522 sequence designations
- Added new lineage AY.12 from #170 with 575 new sequence designations and 4 sequence designations updated from B.1.617.2 (Israel/SMC-7004305/2021, Israel/SMC-7004309/2021, Israel/SMC-7004415/2021, Israel/SMC-7004416/2021)
Published by chrisruis about 3 years ago
- Added new lineages AZ.1-AZ.6 and AZ.2.1 from #171. Also added 1341 new B.1.1.318 sequence designations. The number of sequence designations in this region of the tree is now: 1356 B.1.1.318, 829 AZ.1, 956 AZ.2, 100 AZ.2.1, 175 AZ.3, 264 AZ.4, 166 AZ.5 and 82 AZ.6
- Added 2 new AY.10 sequence designations
Published by chrisruis about 3 years ago
- Based on #168, added new lineage A.2.5.3 with 57 new sequence designations. Also added new sequence designations for surrounding lineages: 997 A.2.5, 102 A.2.5.1 and 206 A.2.5.2 sequences. There are now 1028 A.2.5, 135 A.2.5.1, 260 A.2.5.2 and 57 A.2.5.3 sequence designations
Published by chrisruis about 3 years ago
- Added new lineage P.1.8 from #164 with 32 new sequence designations
Published by chrisruis about 3 years ago
- Added new lineage Q.3 from #92 with 5332 new sequence designations and 25 sequence designations updated from B.1.1.7
Published by chrisruis about 3 years ago
- Added new lineage Q.1 from #39 with 4820 new sequence designations
- Added new lineage Q.2 from #79 with 1379 new sequence designations and 5 sequence designations updated from B.1.1.7 (Italy/CAM-TIGEM-176/2020, Italy/CAM-TIGEM-179/2020, Italy/CAM-TIGEM-175/2020, Italy/CAM-INMI-118/2020, Italy/CAM-TIGEM-1350/2020)