pango-designation

• Added new lineages AY.4-AY.10
• Added new lineage P.7 from #29 with 139 new sequence designations and 27 updated from B.1.1.28

• Added new lineage C.37.1 from #158 with 100 new sequence designations and 6 sequence designations updated from C.37 (USA/MI-CDC-QDX23313722/2021, USA/NJ-CDC-ASC210010813/2021, USA/MI-CDC-IBX002609320124/2021, USA/NY-PRL-2021_0414_00A19/2021, USA/MI-UM-10039177218/2021, USA/PA-CDC-ASC210026169/2021)
• Added new lineage B.1.634 from #159 with 67 new sequence designations
• Added new lineage B.1.635 from #159 with 49 new sequence designations and 2 sequence designations updated from B.1 (USA/NMDOH-2021045051/2021, USA/NMDOH-2021037624/2021)

• Added new lineage B.1.633 from #155 with 9 new sequence designations
• Added new lineage B.1.415.1 from #157 with 64 new sequence designations

• Added new lineage B.1.632 from #156 with 37 new sequence designations

• Updated lineage B.1.1.527 to C.38. Therefore B.1.1.527 is withdrawn and the 101 sequences previously designated B.1.1.527 are now designated C.38

• Added 240 new B.1.628 sequence designations based on #143
• Added new lineage B.1.1.527 from #150 with 101 new sequence designations
• Updated designation of DRC/2047/2020 from C.11 to B.1.1.1 as it does not have the defining C.11 mutation

• Added new lineage P.6 from #148 with 171 new sequence designations
• Added new lineage B.1.619.1 from #160 with 1063 new sequence designations
• Added 839 new B.1.619 sequence designations based on #149
• Added 10 B.1, 1 B.1.427 and 1 B.1.428 sequence designations based on #149

• Added new lineage B.1.631 from #146 with 33 new sequence designations

• Added new lineage AY.3.1 from #147 with 197 sequence designations. Also added 571 new AY.3 sequence designations based on #147 and #142. There are now 846 sequences designated AY.3

• Added 5 new lineages P.1 sublineages from #141: P.1.3 (25 new sequence designations), P.1.4 (93 new sequence designations), P.1.5 (8 new sequence designations), P.1.6 (85 new sequence designations) and P.1.7 (272 new sequence designations)
• Added 5 new sequence designations based on #133

• Added new lineage C.1.2 from #139 with 15 new sequence designations
• Added 118 new AT.1 sequence designations based on #152
• Removed 6 AY.1 sequence designations - 5 that potentially acquired K417N independently and 1 that does not have K417N

• Removed sequence USA/TX-HMH-MCoV-19489/2020 from lineages.csv based on discussion in #127
• Added new sequence designations USA/TX-HMH-MCoV-24409/2021 (B.1) and USA/TX-CDC-LC0064671/2021 (A.2.5.2) based on discussion in #127

• Withdrew lineage B.1.351.4 with removal of 17 sequence designations based on discussion in #134

• Added new lineage B.1.630 from #137 containing 28 new sequence designations

• Added new lineage B.1.351.4 from #134 with 17 new sequence designations
• Added new lineage A.30 from #138 with 5 new sequence designations

• Added 187 new AY.1 sequence designations. There are now 249 sequences designated AY.1

Updated sequence designations for AY.2 and AY.3 to include all sequences in these clades with <5% ambiguity as of 7th July 2021

• Added 82 new AY.2 sequence designations
• Added 130 new AY.3 sequence designations and updated 35 sequence designations from B.1.617.2 to AY.3. The 35 sequences with updated designations are in:
  updated_AY.3_designations.txt

The number of sequence designations in this part of the tree is now:
B.1.617.2 - 55,425 sequences
AY.1 - 62 sequences
AY.2 - 201 sequences
AY.3 - 275 sequences

• Added 55,286 new B.1.617.2 sequence designations to lineages.csv. These are all of the sequences assigned to B.1.617.2 on GISAID as of 05/07/2021 that have all 13 SNPs in the B.1.617.2 constellation and <5% ambiguous genome positions

• Added 108 new B.1.1.519 sequence designations based on #111

• Added new lineage B.1.629 from #132 with 41 new sequence designations