pango-designation

Repository for suggesting new lineages that should be added to the current scheme

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pango-designation - pango designation v1.29 Latest Release

Published by AngieHinrichs 3 months ago

Release notes

4401ad49 - Yat-sing Ng, 2024-05-20 17:47:39 +0800 : Update lineage_notes.txt
9fb59167 - Yat-sing Ng, 2024-05-21 23:18:03 +0800 : Update lineage_notes.txt
f4ec864e - Yat-sing Ng, 2024-05-21 23:19:39 +0800 : Update lineage_notes.txt
1fea9d3f - Federico Gueli, 2024-06-17 14:27:18 +0200 : Update lineage_notes.txt
60eb4172 - Cornelius Roemer, 2024-06-29 11:24:39 +0200 : Designate XDD.3 (S:T572I, S:F456L (T22928C), G12268A, T17574G, France/Europe)
3c64f3ce - Cornelius Roemer, 2024-06-29 11:33:17 +0200 : Extra XDY designations
b0a4a61f - Cornelius Roemer, 2024-06-29 11:50:29 +0200 : Designate LF.3.1.1 (S:L1143F, USA-CO)
ccb46f60 - Cornelius Roemer, 2024-06-29 11:54:36 +0200 : Designate LB.1.3.1 (S:445P, N:T379I)
40ed9bf3 - Cornelius Roemer, 2024-06-29 12:22:49 +0200 : Designate JN.1.18.6 (S:F456L (T22928C), S:F59S), KP.2.3.4 (S:445P, A15759G, C27804T)
3cdd87c3 - Cornelius Roemer, 2024-06-29 12:26:45 +0200 : Designate LY.1 (JN.1.18.6, S:F65Y, S:Q183P), LY.2 (S:Q183H, C2143T)
8349a384 - Cornelius Roemer, 2024-06-29 12:29:36 +0200 : Designate JN.1.18.7 (S:F59S, S:D1260Y)
c0e97bd7 - Cornelius Roemer, 2024-06-29 12:39:34 +0200 : Designate LZ.1 (S:F456L (T22930A), N:A152T, ORF1a:I740V), LZ.1.1 (S:P217S, S:N1125S)
17a53f07 - Cornelius Roemer, 2024-06-29 12:50:07 +0200 : Designate MA.1 (JN.1.18.3.1, S:R190S, S:31del)
c714b71d - Cornelius Roemer, 2024-06-29 12:55:42 +0200 : Designate MB.1 (JN.1.49.1, S:F456V (T22928G), S:S31F), MB.1.1 (S:ST22N, S:K182N)
18f3ef0e - Cornelius Roemer, 2024-06-29 13:04:53 +0200 : Designate LP.1.1 (S:S255F, Dominican Republic)
6c579b80 - Cornelius Roemer, 2024-06-29 13:32:56 +0200 : Designate LF.4 (JN.1.16.1, N:R385K, ORF1a:T4368I), LF.4.1 (S:31del, ORF1a:G519S, ORF8:Q29*)
90185bff - Cornelius Roemer, 2024-06-29 13:38:23 +0200 : Designate KP.3.3.1 (S:T547K, ORF3a:F87S)
cd1347a2 - Cornelius Roemer, 2024-06-29 13:40:46 +0200 : Designate MC.1 (KP.3.1.1, S:T572I)
d0ce1fce - Federico Gueli, 2024-06-30 00:21:53 +0200 : Update lineage_notes.txt
bd5e9926 - Federico Gueli, 2024-06-30 00:45:59 +0200 : Update lineage_notes.txt
fd8a71ae - Mydtlwn, 2024-06-30 09:37:32 +0800 : Update lineage_notes.txt
4699799c - Cornelius Roemer, 2024-07-01 16:36:15 +0200 : Designate LU.2 (S:R346T, after T20865C), designate extra JN.1.15.1 (S:F456L, ORF3a:R122S, Ecuador)
c0c9b1b3 - Cornelius Roemer, 2024-07-01 16:53:06 +0200 : Designate JN.1.64 (ORF1a:N2147S (A6705G)), JN.1.64.1 (S:R346T), MD.1 (JN.1.64.1.1, S:F456L (T22930A)) ...
611a5ca4 - Federico Gueli, 2024-07-02 00:46:41 +0200 : Update lineage_notes.txt
eea38e5d - aviczhl2, 2024-07-03 15:53:00 +0800 : add_1_from_main_85_from_lineage_proposals
088a24eb - Cornelius Roemer, 2024-07-03 14:43:35 +0200 : Designate LK.2 (JN.1.7.3.2, S:R346T after ORF1a:H3395Y), LK.2.1 (S:S455A, S:T547K, Central America)
46248010 - Cornelius Roemer, 2024-07-03 15:21:21 +0200 : Designate JN.1.7.8 (S:F456L (22930A), S:185-189del, N:365L, Central America)
3bd6f7cd - Cornelius Roemer, 2024-07-03 15:25:53 +0200 : Designate JN.1.50.2 (ORF1a:N1540S (A4884G, T4885C)), ME.1 (JN.1.50.2.1, S:R346K)
4cdd3acf - Cornelius Roemer, 2024-07-10 09:53:08 +0200 : LF.5 (JN.1.16.1.5, S:T33A, S:N185D, C28660T)
3c532568 - Cornelius Roemer, 2024-07-10 09:57:25 +0200 : JN.1.48.3 Alias of B.1.1.529.2.86.1.1.48.3, S:60P, S:R346T, S:F456L, ORF3a:S60F, ORF1a:T1761I, on T3913A, C8092T branch, South Africa
96fbeacf - Cornelius Roemer, 2024-07-10 09:59:48 +0200 : Remove C19716T from KS.1.1 requirements, add extra designations
ea75ab8e - Cornelius Roemer, 2024-07-10 10:01:23 +0200 : KS.1.3 Alias of B.1.1.529.2.86.1.1.13.1.3, S:V642A, Dominican Republic
bffb6379 - Cornelius Roemer, 2024-07-10 10:05:46 +0200 : Designate JN.1.65 Alias of B.1.1.529.2.86.1.1.65, S:T572I, after T23629C, G25647T, A5053G, Spain
05535cf0 - Cornelius Roemer, 2024-07-10 10:10:10 +0200 : Designate JN.1.65.1 Alias of B.1.1.529.2.86.1.1.65.1, S:F456L (22928C), A10420G, C5884T, C29149T, C20483T, Spain
f8ed498a - Cornelius Roemer, 2024-07-10 10:12:18 +0200 : Designate MF.1 Alias of B.1.1.529.2.86.1.1.65.1.1, S:R346T, T21673C, pre-22981T
0720b777 - Cornelius Roemer, 2024-07-10 10:14:29 +0200 : Designate MF.2 Alias of B.1.1.529.2.86.1.1.65.1.2, S:S60P, S:W64L
7125e606 - Cornelius Roemer, 2024-07-10 10:18:18 +0200 : Designate KP.3.3.2 Alias of B.1.1.529.2.86.1.1.11.1.3.3.2, S:A435S, ORF1a:N4134T, England/Canada
f95ef962 - Cornelius Roemer, 2024-07-10 10:46:01 +0200 : Designate MG.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.1.1, S:T572I, S:679N, ORF1a:V3091I
123e0550 - Cornelius Roemer, 2024-07-10 10:47:51 +0200 : Designate KP.4.2.3 Alias of B.1.1.529.2.86.1.1.11.1.4.2.3, S:G35R, ORF1a:G519S, ORF1a:I2227V
641e5fcd - Cornelius Roemer, 2024-07-10 10:49:57 +0200 : Designate KP.2.17 (Alias of B.1.1.529.2.86.1.1.11.1.2.17, S:G35R, C23758T, C7765T, T14418C, Singapore)
870c80a1 - Federico Gueli, 2024-07-10 11:09:17 +0200 : Update lineage_notes.txt
0aa996e3 - Cornelius Roemer, 2024-07-10 14:21:22 +0200 : Designate LB.1.3.2 (C25413T), MH.1 (Alias of B.1.1.529.2.86.1.1.9.2.1.3.2.1, S:T572I)
05eee64f - Cornelius Roemer, 2024-07-10 14:36:05 +0200 : LB.1.8 (ORF1a:I785V)
cf8af795 - Cornelius Roemer, 2024-07-10 14:41:11 +0200 : JN.1.7.9 (G347A, C1057T, C7834T, S:F456L (22930A))
d7383d53 - Cornelius Roemer, 2024-07-10 14:51:39 +0200 : Extra designations JN.1.7.8: currently Usher has this wrongly annotated
b4b0980e - Cornelius Roemer, 2024-07-10 14:59:06 +0200 : Designate MJ.1 (JN.1.29.1.1, S:R346T, S:S31P, ORF1a:E2070K)
569d1c39 - Cornelius Roemer, 2024-07-12 12:26:16 +0200 : KP.3.1.6, MK.1 (S:31F), MK.2 (S:D745G)
1484571b - Cornelius Roemer, 2024-07-12 12:27:53 +0200 : Extra MK.1 designations
4438f33f - Cornelius Roemer, 2024-07-12 12:34:44 +0200 : Designate KP.3.4 (ORF3a:L73F, C25521T, Asia) and KP.3.4.1 ( S:S31F, N:A134V, ORF1a:E1192K)
1e6f9967 - Cornelius Roemer, 2024-07-12 12:41:08 +0200 : Designate KP.3.3.3 (G9424T, Japan/Canada), ML.1 (S:681H), ML.2 (S:Q677H)
5b1cc1b8 - Cornelius Roemer, 2024-07-12 12:48:24 +0200 : MM.1 (KP.3.1.4, S:S680P) and MM.2 (KP.3.1.4, S:G35R, S:N185D)
3ff65be6 - Cornelius Roemer, 2024-07-12 13:14:59 +0200 : Designate JN.1.66 (S:H445P, S:F456L (T22930A), S:T1117I, ORF1a:L2146F, ORF3a:L106F, Iceland/Sweden)
98c767a5 - Cornelius Roemer, 2024-07-12 14:47:20 +0200 : Designate MN.1 (JN.1.18.7, S:D80Y, S:P174S, S:S689N, England/Wales)
1216c06b - Cornelius Roemer, 2024-07-12 14:50:22 +0200 : Designate KP.3.5 (S:G213E)
4b2f2378 - Cornelius Roemer, 2024-07-13 10:56:12 +0200 : Designate LB.1.4.1 ( S:R190S)
441771d9 - Cornelius Roemer, 2024-07-13 11:00:13 +0200 : LB.1.7 sublineages with N148T, S680P, R34C, respectively
6fce4480 - Federico Gueli, 2024-07-22 18:53:28 +0200 : Update lineage_notes.txt
87b96ea9 - Angie Hinrichs, 2024-07-25 15:45:40 -0700 : Merge pull request #2658 from FedeGueli/patch-46
5112a51a - Angie Hinrichs, 2024-07-25 15:46:04 -0700 : Merge pull request #2672 from FedeGueli/patch-48
f8623882 - Angie Hinrichs, 2024-07-25 15:48:58 -0700 : Merge pull request #2674 from FedeGueli/patch-50
e5b89009 - Angie Hinrichs, 2024-07-25 15:50:41 -0700 : Merge pull request #2675 from Mydtlwn/master
884bf467 - Angie Hinrichs, 2024-07-25 15:52:11 -0700 : Merge pull request #2678 from FedeGueli/patch-51
3f373ef7 - Angie Hinrichs, 2024-07-25 16:00:35 -0700 : Merge pull request #2683 from aviczhl2/master
3146f632 - Angie Hinrichs, 2024-07-25 16:03:29 -0700 : Merge pull request #2690 from FedeGueli/patch-52
33853e38 - Angie Hinrichs, 2024-07-25 16:05:07 -0700 : Merge pull request #2695 from FedeGueli/patch-53
ac5f002d - Angie Hinrichs, 2024-07-25 16:25:54 -0700 : Merge pull request #2597 from Over-There-Is/patch-9

pango-designation - pango designation v1.28

Published by AngieHinrichs 4 months ago

Release notes

edbc0d0 - Cornelius Roemer, 2024-05-01 19:10:52 +0200 : Extra JN.1 designations (there were only 2 left)
5ea87bc - Cornelius Roemer, 2024-05-15 18:26:53 +0200 : Designate XDQ.1.1 (S:S60P, C1594T, Japan)
8008fdb - Cornelius Roemer, 2024-05-15 18:33:26 +0200 : Designate XDK.1.1 (S:K182R, S:E213G, India) and XDK.1.2 (S:F456L)
541e8ec - Cornelius Roemer, 2024-05-15 18:41:58 +0200 : Designate XDK.2 (S:K679R, T4996A, C11173T, A23598G, C27297T) and XDK.3 (S:F456L, ORF1a:F3397L)
acd0f55 - Cornelius Roemer, 2024-05-15 18:45:03 +0200 : Designate XDR.1 (S:F59S, G6077T, A14031G, C26801T, Brazil/Peru)
46b2f54 - Cornelius Roemer, 2024-05-15 20:44:52 +0200 : Designate KP.2.4 (S:T250N)
9f63e5c - Cornelius Roemer, 2024-05-15 20:45:45 +0200 : Designate KP.2.5 (S:N185D)
2d7a88d - Cornelius Roemer, 2024-05-15 20:47:34 +0200 : Designate KP.2.6 (S:W64R), KP.2.7 (S:S31F)
3f2cd1e - Cornelius Roemer, 2024-05-15 20:49:59 +0200 : Designate KP.2.3.1 (S:A475V)
0161674 - Cornelius Roemer, 2024-05-15 20:51:11 +0200 : Designate KP.4.2.1 (S:S31F)
e91d285 - Cornelius Roemer, 2024-05-15 20:52:11 +0200 : Designate KP.2.8 (S:S60P)
46a6f7e - Cornelius Roemer, 2024-05-15 20:53:29 +0200 : Designate KP.2.9 (S:T572I)
0c57996 - Cornelius Roemer, 2024-05-15 20:54:40 +0200 : Designate KP.2.10 (S:F59S, Singapore)
b868224 - Cornelius Roemer, 2024-05-15 20:56:41 +0200 : Designate KP.2.11 (S:F56V, ORF1a:T2093I, England)
426e156 - Cornelius Roemer, 2024-05-15 21:02:20 +0200 : Designate KP.2.12 and LD.1 (JN.1.48.1.1, S:T572I)
622c0a2 - Cornelius Roemer, 2024-05-15 21:42:30 +0200 : Designate LE.1 (JN.1.4.7.1, S:R346T), KP.1.1.2 (S:P1162S, T2152C), JN.1.48.2 (S:R346T, ORF1a:A427V, A3829G, India)
47360ae - Cornelius Roemer, 2024-05-15 21:44:14 +0200 : Designate LE.1.1 (S:F456V), LE.1.2 (S:K304N)
aaf738f - Cornelius Roemer, 2024-05-15 21:47:19 +0200 : Designate LE.2 (S:R346S, C7423T)
e842705 - Cornelius Roemer, 2024-05-15 22:11:58 +0200 : Designate LF.1 (JN.1.16.1, ORF1a:A1268T, ORF1a:S2103F)
5688ef9 - Cornelius Roemer, 2024-05-15 22:12:53 +0200 : Designate LF.1.1 (S:P1263L)
5d5d81e - Cornelius Roemer, 2024-05-15 22:22:54 +0200 : Designate JN.1.42.2 (S:R346T, Peru)
a11ab22 - Cornelius Roemer, 2024-05-15 22:25:34 +0200 : Designate JN.1.49 (ORF3a:T89I, India)
bd87238 - Cornelius Roemer, 2024-05-15 22:26:45 +0200 : Designate JN.1.49.1 (S:R346T)
3f31249 - Cornelius Roemer, 2024-05-15 22:27:39 +0200 : Designate JN.1.49 (S:F456L)
9ef6dbb - Cornelius Roemer, 2024-05-15 22:30:09 +0200 : Designate KW.1.1.1 (S:T95S, Australia)
bd06dd4 - Cornelius Roemer, 2024-05-15 22:31:46 +0200 : Designate LG.1 (KW.1.1.1.1, S:R346T)
416a561 - Cornelius Roemer, 2024-05-15 22:43:34 +0200 : Designate JN.1.39.1 (S:R346T, S:F456L, C21034T, T25631C, A16011G, T6913C)
c226ef7 - Federico Gueli, 2024-05-16 00:53:36 +0200 : Update lineage_notes.txt
dbfae34 - Cornelius Roemer, 2024-05-16 11:08:57 +0200 : Designate KP.5 (S:T572I), JN.1.39.2 (S:R346T, T111C)
ce08dba - Cornelius Roemer, 2024-05-16 11:11:29 +0200 : Designate KP.3.1 (G15372T, A19722G)
6412249 - Cornelius Roemer, 2024-05-16 11:13:15 +0200 : Add additional KP.3 designations for stability
7ff7747 - Cornelius Roemer, 2024-05-16 11:15:16 +0200 : Designate KP.3.2 (A2611C, C22858T)
02f5669 - Cornelius Roemer, 2024-05-16 11:24:52 +0200 : Designate KP.3.3 (S:R204P)
19d3f9c - Cornelius Roemer, 2024-05-16 12:56:16 +0200 : Redesignate JN.1.33 as JN.1.39.3 after closer analysis
6685c75 - Cornelius Roemer, 2024-05-16 13:36:55 +0200 : Designate JN.3.3 (A5641G, C14478T, C21676T), JN.17 (C12781T, Japan), JN.16 (ORF3a:T229I, Japan), JN.15 (C24319T, Japan)
79d6afb - Cornelius Roemer, 2024-05-16 13:39:38 +0200 : Designate JN.11.1 (S:L455S)
0674de3 - Cornelius Roemer, 2024-05-16 13:42:46 +0200 : Designate BA.2.86.6 (C9226T)
d60bc5e - Cornelius Roemer, 2024-05-16 13:44:03 +0200 : Designate JN.18 (T11614C)
1ff69c9 - Cornelius Roemer, 2024-05-16 13:47:42 +0200 : Designate JQ.2.1.1 (S:F456L, South Africa)
886efd2 - Cornelius Roemer, 2024-05-16 13:50:00 +0200 : Designate JN.19 (A14601G, Japan)
61c49fc - Federico Gueli, 2024-05-16 18:01:51 +0200 : Update lineage_notes.txt
c8369c4 - Mydtlwn, 2024-05-17 07:31:36 +0800 : Update lineage_notes.txt
5191300 - Cornelius Roemer, 2024-05-17 18:47:20 +0200 : Designate JN.1.1.8 (S:F456L (22930A), S:H445P, ORF1a:S2083I, C850T)
c0d3b2a - Cornelius Roemer, 2024-05-17 19:04:59 +0200 : Designate KP.2.13 (S:K478E, N:P6T, C9565T, C24553T, USA/Canada)
935a255 - Cornelius Roemer, 2024-05-18 02:20:17 +0200 : Designate JN.1.50 (S:H445P,S:F456L, S:A67V, S:L249F, Europe)
ddb5af3 - Federico Gueli, 2024-05-18 09:38:12 +0200 : Update lineage_notes.txt
7cc2859 - Angie Hinrichs, 2024-05-23 11:04:13 -0700 : Merge pull request #2590 from FedeGueli/patch-36
8b17072 - Angie Hinrichs, 2024-05-23 11:04:43 -0700 : Merge pull request #2592 from FedeGueli/patch-37
22b011a - Angie Hinrichs, 2024-05-23 11:06:17 -0700 : Merge pull request #2593 from Mydtlwn/master
0969d26 - Angie Hinrichs, 2024-05-23 11:07:25 -0700 : Merge pull request #2594 from FedeGueli/patch-38
fc4ba5c - Cornelius Roemer, 2024-05-28 00:48:25 +0200 : Designate JN.1.23.1 (S:V1264L, S:N137K, Brazil)
d9996a8 - Cornelius Roemer, 2024-05-28 00:50:11 +0200 : Designate JN.1.29.1 (S:F456L)
978a25a - Cornelius Roemer, 2024-05-28 01:00:08 +0200 : Designate JN.1.18.3 (S:F456V)
cdf43cc - Cornelius Roemer, 2024-05-28 01:11:54 +0200 : Designate JN.1.18.4 (S:F456L (T22930G), ORF6:I60T, T23036C, Ghana)
95b07a7 - Cornelius Roemer, 2024-05-28 01:13:20 +0200 : Designate LH.1 (S:K182I)
9bc4a49 - Cornelius Roemer, 2024-05-28 01:15:19 +0200 : Designate LH.2 (S:I197V, S:P251H)
95b07a7 - Cornelius Roemer, 2024-05-28 01:13:20 +0200 : Designate LH.1 (S:K182I)
9bc4a49 - Cornelius Roemer, 2024-05-28 01:15:19 +0200 : Designate LH.2 (S:I197V, S:P251H)
3a035bd - Cornelius Roemer, 2024-05-28 01:17:48 +0200 : Designate KP.1.1.3 (C4999T, many with S:S31del)
7b9dd23 - Cornelius Roemer, 2024-05-28 01:19:46 +0200 : Designaet KP.3.1.1 (ORF1a:S4286C, C12616T, S:S31del, Spain)
f08b13f - Cornelius Roemer, 2024-05-28 01:22:05 +0200 : Designate KP.2.14 (S:G184V, S:S31F)
528133e - Cornelius Roemer, 2024-05-28 01:25:11 +0200 : Designate JN.1.51 (C4795T)
ffbe421 - Cornelius Roemer, 2024-05-28 01:27:08 +0200 : Designate JN.1.51.1 (S:F456L)
27d365b - Cornelius Roemer, 2024-05-28 01:28:34 +0200 : Designate LJ.1 (JN.1.51.1.1, S:T22N)
544be2a - Cornelius Roemer, 2024-05-28 01:31:22 +0200 : Designate LF.2 (ORF1a:K247R, ORF3a:Y184H, many with S:S31del)
c43f2f8 - Cornelius Roemer, 2024-05-28 01:33:12 +0200 : Add extra KP.3.1.1 designations
dce8b07 - Cornelius Roemer, 2024-05-28 01:36:28 +0200 : Designate JN.1.52 (ORF1a:K3353R)
b420df2 - Cornelius Roemer, 2024-05-28 01:40:18 +0200 : Designate JN.1.7.5 (ORF1a:H3395Y)
922795c - Cornelius Roemer, 2024-05-28 01:42:05 +0200 : Designate LK.1 (JN.1.7.5.1, S:445P, ORF1a:R1170C, USA/Canada)
06fd164 - Cornelius Roemer, 2024-05-28 01:44:08 +0200 : Designate JN.1.50.1 (S:R346T)
425d5a7 - Cornelius Roemer, 2024-05-28 01:46:34 +0200 : Designate LF.3 (ORF1a:A4285V, Peru)
aa7919a - Cornelius Roemer, 2024-05-28 01:49:49 +0200 : Designate KP.4.2.2 (S:F59I)
480f4d9 - Cornelius Roemer, 2024-05-28 01:59:36 +0200 : Designate XDK.4 (C25626T), XDK.4.1 (S:F456L, France/Luxembourg)
f6c8c34 - Cornelius Roemer, 2024-05-28 02:01:27 +0200 : Designate XDK.5 (S:F456L, C22388T, Spain)
8bd6644 - Cornelius Roemer, 2024-05-28 02:03:51 +0200 : Designate XDK.6 (S:F456L, S:R237K, S:Q1201K, England)
7a7a727 - Cornelius Roemer, 2024-05-28 02:09:25 +0200 : Add extra JN.1.48.1 designations
891b587 - Cornelius Roemer, 2024-05-28 02:12:58 +0200 : Designate LL.1 (JN.1.4.2.1, S:F456L (T22930A), S:S680F, USA)
26a96ed - Cornelius Roemer, 2024-05-28 02:18:56 +0200 : Designate LM.1 (JN.1.25.1.1, S:F456L)
c1b4638 - Cornelius Roemer, 2024-05-28 02:21:17 +0200 : Designate KS.1.1 (S:T22N)
6f035c5 - Cornelius Roemer, 2024-05-28 02:41:55 +0200 : Designate JN.1.53 (C15720T, Senegal)
ee88d98 - Cornelius Roemer, 2024-05-28 02:44:16 +0200 : Designate JN.1.53.1 (C583T)
fbfc41e - Cornelius Roemer, 2024-05-28 02:46:40 +0200 : Designate LN.1 (JN.1.53.1.1, S:R346T), LN.1.1 (S:F456L, S:478I)
d4897da - Cornelius Roemer, 2024-05-28 02:50:50 +0200 : Designate JN.1.54 (A9085G), JN.1.54.1 (S:F456L, S:V407I, Spain)
73bdba2 - Federico Gueli, 2024-05-28 09:50:14 +0200 : Update lineage_notes.txt
1863b57 - Federico Gueli, 2024-05-28 11:02:42 +0200 : Update lineage_notes.txt
09a29cd - Federico Gueli, 2024-05-28 11:19:46 +0200 : Update lineage_notes.txt
924ed4e - Federico Gueli, 2024-05-28 12:22:39 +0200 : Update lineage_notes.txt
5951c04 - Cornelius Roemer, 2024-05-28 17:56:47 +0200 : Fix missing strains for JN.1.7.5
9d95c71 - Cornelius Roemer, 2024-05-28 19:44:30 +0200 : Fix wrong designation of LK.1's
b64ef5d - Cornelius Roemer, 2024-05-29 21:20:29 +0200 : Designate KP.3.4 (S:W258R)
7beae7d - Cornelius Roemer, 2024-05-29 21:22:51 +0200 : Designate KP.3.2.1 (S:A263V, Australia/Singapore)
0d3b395 - J. Steen Hoyer, 2024-05-30 13:15:28 -0400 : Replace broken pango.network links with archive.org versions
1cd2473 - Angie Hinrichs, 2024-05-30 10:36:10 -0700 : Merge pull request #2626 from jshoyer/master
197106b - Cornelius Roemer, 2024-05-30 19:51:55 +0200 : Designate KP.2.15 (A10861G, S:31del, USA/Canada)
63b5972 - Cornelius Roemer, 2024-05-30 22:16:59 +0200 : Designate KR.2 (S:F456V, L176F, USA/Canada)
358827b - Cornelius Roemer, 2024-05-30 22:23:41 +0200 : Designate KR.1.1, KR.1.2, KR.3, KR.4
e2a747c - Cornelius Roemer, 2024-05-30 22:25:51 +0200 : Designate KR.5 (ORF1a:L642F, ORF1a:T2087I, Brazil)
9facdf9 - Cornelius Roemer, 2024-05-30 22:38:01 +0200 : Designate KS.1.2, JN.1.55(.1,.2)
aa8f0d8 - Cornelius Roemer, 2024-05-30 22:48:15 +0200 : Redesignate KP.3.4 as KP.3.2.2 (dropout of single sequence causes misplacement on tree)
ba51d8a - Cornelius Roemer, 2024-05-31 10:29:39 +0200 : Designate JN.1.56 (ORF3a:K399R), JN.1.56.1 (S:G181R, S:R346T, S:F456V, ORF1a:T1638I)
4b4c041 - Cornelius Roemer, 2024-05-31 11:57:11 +0200 : Designate JN.1.44.1 (S:R346T, Cameroon/France)
fb7a819 - Federico Gueli, 2024-05-31 17:17:47 +0200 : Update lineage_notes.txt
6b3b126 - Cornelius Roemer, 2024-06-04 13:12:42 +0200 : Designate LB.1.1 (S:V1104L, Canada)
0312215 - Cornelius Roemer, 2024-06-04 13:22:27 +0200 : Designate LB.1.2 (ORF1b:G2068R) and LB.1.2.1 (S:R190T)
459c026 - Cornelius Roemer, 2024-06-04 13:25:05 +0200 : Designate LB.1.3 (ORF1b:T1555I)
75ae064 - Cornelius Roemer, 2024-06-04 13:27:24 +0200 : Designate LB.1.4 (ORF1a:A1473V)
edd3d26 - Cornelius Roemer, 2024-06-04 13:32:07 +0200 : Designate LB.1.5 (S:L1143F, ORF1b:T1621I, Asia)
d4ff903 - Cornelius Roemer, 2024-06-04 13:33:13 +0200 : Designate LB.1.6 (S:I670M, England/Canada)
3b6a911 - Cornelius Roemer, 2024-06-04 13:36:08 +0200 : Designate KP.2.3.2 (S:G184V)
401c420 - Cornelius Roemer, 2024-06-04 13:39:54 +0200 : Designate KP.2.16 (ORF8:F6S)
33233d8 - Cornelius Roemer, 2024-06-04 13:45:13 +0200 : Designate LF.3.1 (S:445P)
fe74ec4 - Cornelius Roemer, 2024-06-04 13:48:22 +0200 : Designate KP.3.1.2 (S:S151I)
000e444 - Cornelius Roemer, 2024-06-04 13:51:25 +0200 : Designate KP.3.1.3 (S:S31F) and KP.3.1.4 (ORF1b:P1675S)
a1010e0 - Cornelius Roemer, 2024-06-04 13:53:42 +0200 : Designate KP.3.2.3 (ORF3a:S40P, C11518T)
c13b9d8 - Cornelius Roemer, 2024-06-04 13:55:52 +0200 : Designate KP.3.2.4 (ORF3a:L73F)
6b77909 - Cornelius Roemer, 2024-06-04 14:05:35 +0200 : Designate LF.1.1.1 ( S:S31-, T19209C) and LB.1.7 (ORF1a:L1507F, G21123T)
f20c83e - Cornelius Roemer, 2024-06-04 14:09:33 +0200 : Designate KP.1.1.4 (S:R214H, C11866T, C23929T)
116570d - Cornelius Roemer, 2024-06-04 14:37:36 +0200 : Designate LP.1 (KP.1.1.3.1, S:M1229I)
e14d5bf - Cornelius Roemer, 2024-06-04 15:03:15 +0200 : Designate LP.2 (S:S71Y, ORF1b:T2286I) and XDY (Recombinant lineage of LB.1.2.1 and KP.3.2 (breakpoint between 22131-22599), Sweden/Spain, from sars-cov-2-variants/lineage-proposals#1559)
cba648f - Cornelius Roemer, 2024-06-04 15:09:44 +0200 : Designate LQ.1 (JN.1.18.1.1), LQ.1.1, LQ.2, LQ.3
93be68c - Cornelius Roemer, 2024-06-04 15:44:06 +0200 : Designate JN.1.4.8 (S:S60P, T13578C, USA), JN.1.7.6 (S:S60P, ORF1a:P1609S, Wales), JN.1.57 (ORF1b:A1219S, A11947G), JN.1.57.1 (S:S60P, Taiwan/South Korea), JN.1.58 (ORF1b:K2557R), JN.1.58.1 (S:S60P), JN.1.58.2 (S:R346T)
7cb5b6b - Cornelius Roemer, 2024-06-04 15:47:31 +0200 : Designate LR.1 (JN.1.58.2, S:F456L (22928C)) and LR.2 (S:F456V)
f136f55 - Cornelius Roemer, 2024-06-05 14:36:59 +0200 : fix: remove reverted/misplaced/recombinant JN.1.58.1 designations
2543ee6 - Cornelius Roemer, 2024-06-05 14:41:06 +0200 : Designate JN.1.59 (ORF1a:A1204S)
37ed7cf - Cornelius Roemer, 2024-06-05 14:49:56 +0200 : Designate (JN.1.60, C4543T), JN.1.7.7 ( ORF1b:K2557R )
6b15797 - Cornelius Roemer, 2024-06-05 14:59:00 +0200 : Designate JN.1.61 (S:K444R)
971f170 - Doksuri2305, 2024-06-06 14:52:57 +0800 : Update lineage_notes.txt
1e87c67 - Doksuri2305, 2024-06-07 17:55:41 +0800 : Update lineage_notes.txt
64a634b - Cornelius Roemer, 2024-06-07 15:58:02 +0200 : Designate JN.1.18.5 (S:F456L (T22930A))
6a1bb4f - Cornelius Roemer, 2024-06-07 16:16:43 +0200 : Designate LS.1 (S:Y28H, S:L189P, S:184-188del, ORF1a:E940D)
f128e74 - Angie Hinrichs, 2024-06-07 16:47:48 -0700 : KP.2.3.3 sequences were mislabeled as KP.2.16 in 401c420, fixing, thanks @Over-There-Is for finding that.
7298509 - Cornelius Roemer, 2024-06-08 13:53:07 +0200 : Designate JN.1.62 (S:F456L (22928C), S:V62F, S:R681H)
233e17b - Federico Gueli, 2024-06-08 18:05:25 +0200 : Update lineage_notes.txt
edf43f3 - Cornelius Roemer, 2024-06-09 16:49:57 +0200 : Designate KP.3.2.5 (S:V62F)
418037d - Cornelius Roemer, 2024-06-09 17:14:58 +0200 : Extra XDP and XDP.1 designations
1ae231c - Cornelius Roemer, 2024-06-10 12:59:36 +0200 : Redesignate KR.2 (JN.1.1.5.2) as LT.1 (JN.1.1.3.1) due to lack of C9142T
be128f6 - Cornelius Roemer, 2024-06-10 13:03:38 +0200 : Extra KR.4 designation
377e773 - Cornelius Roemer, 2024-06-10 13:13:05 +0200 : Designate JN.1.1.9 (G2035A, on C9142T branch, China)
7c0dd1e - Cornelius Roemer, 2024-06-10 13:42:51 +0200 : Designate JN.1.16.3 (S:T572I)
5936af6 - Cornelius Roemer, 2024-06-10 14:02:52 +0200 : Designate JN.1.15.1 (S:F456L, ORF3a:R122S, Ecuador)
5793f7d - Cornelius Roemer, 2024-06-10 14:04:41 +0200 : Designate LU.1 (JN.1.15.1.1, S:R346T)
dac2f97 - Angie Hinrichs, 2024-06-10 09:57:21 -0700 : Merge pull request #2616 from FedeGueli/patch-39
5625f41 - Angie Hinrichs, 2024-06-10 09:57:59 -0700 : Merge pull request #2617 from FedeGueli/patch-40
9e01af9 - Angie Hinrichs, 2024-06-10 09:58:56 -0700 : Merge pull request #2618 from FedeGueli/patch-41
0848de6 - Angie Hinrichs, 2024-06-10 10:00:16 -0700 : Merge pull request #2619 from FedeGueli/patch-42
98705a1 - Angie Hinrichs, 2024-06-10 10:04:01 -0700 : Merge pull request #2628 from FedeGueli/patch-43
5e5418c - Angie Hinrichs, 2024-06-10 10:07:50 -0700 : Merge pull request #2642 from Memorablea/patch-3
e7c9fc0 - Angie Hinrichs, 2024-06-10 10:09:14 -0700 : Merge pull request #2648 from FedeGueli/patch-45
121e587 - Cornelius Roemer, 2024-06-12 19:25:33 +0200 : Extra XDY designations
da8df91 - Cornelius Roemer, 2024-06-12 23:13:33 +0200 : Extra XDY designation
b5893d5 - Cornelius Roemer, 2024-06-13 11:21:27 +0200 : Designate BA.2.86.7 (ORF1b:Y1344H, T10819C, C28720T, South Africa)
d734b84 - Cornelius Roemer, 2024-06-14 18:46:43 +0200 : Designate JN.1.1.10 (C23557T, Ukraine) and XDZ (Recombinant of JG.3 and JN.1.1.10 (breakpoint between 11043-12788), Europe/North America)
b72e69f - Cornelius Roemer, 2024-06-14 19:42:45 +0200 : Designate JN.1.63 (ORF1b:K82R), JN.1.63.1 (ORF1a:D1513E, ORF1a:A2529S, Asia) and XEA (JN.1.63.1 and EG.5 (breakpoint between 27057-27915), East Asia)
d905c1d - Cornelius Roemer, 2024-06-14 19:55:14 +0200 : XEB (FL.15, JN.1.4+T18453C, FL.15 (breakpoints at 774-896 and 26834-27809), USA)
20cee51 - Cornelius Roemer, 2024-06-14 19:58:44 +0200 : Designate XDP.2 (S:E309Q, Brazil/Canada), XDP.3 (S:S255F, USA)
294e1ef - Cornelius Roemer, 2024-06-14 20:16:20 +0200 : Designate LV.1 (BA.2.86.6.1, ORF1b:D294N) and LV.2 (S:R346T, S:L455S, S:F456L, ORF1a:E148G, ORF1a:W630C, ORF1a:G1069R, ORF1a:G3546D, ORF1b:A520V)
a4d280c - Cornelius Roemer, 2024-06-14 20:41:11 +0200 : Designate LE.1.3 (S:L84V, ORF7a:T120I, Kenya) and LE.1.3.1 (S:Q173K, S:F456L (T22928C), ORF7a:A66V)
9147383 - Cornelius Roemer, 2024-06-14 21:00:53 +0200 : Designate JN.1.58.3 (S:S31F)
df86946 - Cornelius Roemer, 2024-06-17 14:19:48 +0200 : Designate KP.4.1.1 (S:W258R, India), KP.4.1.2 (S:L441V), KP.4.1.3 (ORF1a:M598V, A5245G, S:31del)
1a03eca - Cornelius Roemer, 2024-06-17 14:21:51 +0200 : Extra KP.4.1 designations
1d0bb6a - Cornelius Roemer, 2024-06-17 14:28:55 +0200 : Designate LW.1 (KP.3.2.3.1, S:K182E, England)
f418605 - Cornelius Roemer, 2024-06-17 14:32:05 +0200 : Designate LP.3 (KP.1.1.3.3, S:K182E, ORF1b:R276S, Singapore)
1a68eee - Cornelius Roemer, 2024-06-17 14:39:42 +0200 : Designate KP.3.1.5 (S:N556K, ORF1a:Q998H, ORF3a:I186V, England)
4413a6b - Cornelius Roemer, 2024-06-17 14:45:43 +0200 : Designate KP.1.1.5 (S:F59S)

pango-designation - pango designation v1.27

Published by AngieHinrichs 6 months ago

Release notes

3475c5b - Cornelius Roemer, 2024-03-09 17:19:03 +0100 : Designate JN.1.1.6 (S:F456L on JN.1.1 polytomy)
2fba814 - Cornelius Roemer, 2024-03-09 18:37:08 +0100 : Designate JN.1.26 (S:R346T, after C26894T, USA)
4d2ed46 - Cornelius Roemer, 2024-03-09 18:38:47 +0100 : Designate JN.1.27 (S:M153I, after C26894T, C25680T, USA)
46718c5 - Cornelius Roemer, 2024-03-09 18:47:19 +0100 : Designate JN.1.4.4 (S:R346T)
ce0782a - Cornelius Roemer, 2024-03-09 18:50:06 +0100 : Designate JN.1.8.2 (S:R346T)
fd116e9 - Cornelius Roemer, 2024-03-09 18:54:47 +0100 : Designate JN.1.28 (C24034T, A29700G, East Asia/Oceania)
e312db5 - Cornelius Roemer, 2024-03-09 18:57:07 +0100 : Designate JN.1.1.7 (S:S31F)
b586709 - Cornelius Roemer, 2024-03-09 19:03:22 +0100 : Remove non-1243F seqs from JN.1.24
82aa62d - Cornelius Roemer, 2024-03-09 19:08:56 +0100 : Designate JN.1.29 (ORF1a:T3224A, after C2644T, Brazil)
72ac258 - Cornelius Roemer, 2024-03-14 09:03:50 +0100 : Designate JN.1.4.5 (ORF8:S103L)
f144a9b - Cornelius Roemer, 2024-03-14 10:15:40 +0100 : Designate JN.1.18.1 (S:T250N)
e0fc8aa - Cornelius Roemer, 2024-03-14 10:20:23 +0100 : Designate JN.1.30 (G21255T)
0092a7f - Cornelius Roemer, 2024-03-14 10:34:40 +0100 : Fix JN.1.4 designations
c83781e - Cornelius Roemer, 2024-03-14 10:40:34 +0100 : Designate JN.1.31 (ORF3a:V13L, C19186T)
b316ca1 - Cornelius Roemer, 2024-03-14 10:56:06 +0100 : Designate JN.1.16.1 (S:R346T)
f7585ae - Cornelius Roemer, 2024-03-14 11:00:32 +0100 : Designate KS.1 (JN.1.13.1.1, S:F456L)
58f350c - Cornelius Roemer, 2024-03-14 11:06:39 +0100 : Designate JN.1.4.6 (S:T572I, after T18453C)
ecf36b9 - Cornelius Roemer, 2024-03-14 11:25:42 +0100 : Designate JN.1.32 (S:T572I, directly on JN.1 polytomy)
1bf723e - Memorable, 2024-03-14 21:40:11 +0800 : Update lineage_notes.txt
e554b7f - Angie Hinrichs, 2024-03-14 15:52:00 -0700 : Merge pull request #2519 from Memorablea/patch-2
fa7c71d - Angie Hinrichs, 2024-03-15 10:21:39 -0700 : Removing name that matches many different sequences.
8efd327 - Memorable, 2024-03-17 13:19:51 +0800 : Update lineage_notes.txt
cb172ab - Cornelius Roemer, 2024-03-17 15:22:03 +0100 : Designate GE.1.2.2 (S:S408N, ORF1b:A517V, ORF1b:D1899E, ORF7a-ORF8 possibly completed deleted, Kenya)
01f1978 - Cornelius Roemer, 2024-03-17 15:31:14 +0100 : Designate KT.1 (GE.1.2.1.1, S:K77R, US/UK)
7b3ad94 - Cornelius Roemer, 2024-03-17 15:32:17 +0100 : Designate KT.1.1 (C683T, G15957A, USA)
4cdf840 - Cornelius Roemer, 2024-03-17 15:36:09 +0100 : Designate KT.1.2 (ORF1b:N2328S, C583T)
47c066b - Cornelius Roemer, 2024-03-17 16:08:05 +0100 : Designate KP.3 (S:Q493E)
98da9b2 - Cornelius Roemer, 2024-03-17 16:16:27 +0100 : Desigante JN.1.33 (S:A67V, G2782T, C5512T, China)
947fc66 - Cornelius Roemer, 2024-03-17 16:17:50 +0100 : Designate JN.1.34 (S:S704L)
efb6b9f - Cornelius Roemer, 2024-03-17 16:19:42 +0100 : Designate JN.1.35 (S:S680Y, after T18471C, Australia/New Zealand)
99bec76 - Cornelius Roemer, 2024-03-17 16:24:07 +0100 : Designate JN.1.36 (S:Q677H, after A29086T)
76391fc - Federico Gueli, 2024-03-17 17:50:32 +0100 : Update lineage_notes.txt
be72bd5 - Memorable, 2024-03-19 13:26:55 +0800 : Update lineage_notes.txt
1da2694 - Cornelius Roemer, 2024-03-19 14:01:53 +0100 : Designate KP.2.1 (S:Q1201K)
92ae63a - Cornelius Roemer, 2024-03-19 14:03:44 +0100 : Designate KP.2.2 (S:F59L, S:K1266R)
e03042f - Cornelius Roemer, 2024-03-19 15:47:09 +0100 : Designate JN.1.30.1 (S:R346T, after T7789C, India)
f0368ef - Angie Hinrichs, 2024-03-19 15:58:20 -0700 : Merge pull request #2524 from Memorablea/patch-2
48ed0b8 - Angie Hinrichs, 2024-03-19 15:59:47 -0700 : Merge pull request #2526 from FedeGueli/patch-30
429fbed - Angie Hinrichs, 2024-03-19 16:16:57 -0700 : Merge pull request #2527 from Memorablea/patch-3
617afbf - Cornelius Roemer, 2024-03-20 17:00:32 +0100 : Designate JQ.2.1 (S:L455S, South Africa)
b450700 - Cornelius Roemer, 2024-03-25 07:32:02 +0100 : Designate XDD.1.1.1 (S:R346T)
1cda06a - Cornelius Roemer, 2024-03-25 07:51:38 +0100 : Designate KU.1 (JN.1.30.1.1, S:K182Q) and KU.2 (S:F456L)
388d260 - Cornelius Roemer, 2024-03-25 07:55:12 +0100 : Designate JN.1.18.2 (S:F59S)
dc9f270 - Cornelius Roemer, 2024-03-25 08:11:17 +0100 : Designate JN.1.36.1 (S:S680F, South Korea)
b62fdd6 - Cornelius Roemer, 2024-03-25 08:13:13 +0100 : Designate KV.1 (S:S680F)
febf823 - Cornelius Roemer, 2024-03-25 08:15:01 +0100 : Designate JN.1.37 (S:S680F, on polytomy)
d2c609b - Cornelius Roemer, 2024-03-25 08:20:23 +0100 : Designate JN.1.28.1 (ORF1a:P1640L, C19545T, C24370T) and KW.1 (JN.1.28.1.1, S:T572I, Australia)
4c84077 - Cornelius Roemer, 2024-03-25 08:25:21 +0100 : Desigante JN.1.38 (ORF1b:R1736K, USA)
c193ce6 - Cornelius Roemer, 2024-03-25 08:27:30 +0100 : Desigante JN.1.39 (G2782T)
b515b3a - Cornelius Roemer, 2024-03-25 08:33:16 +0100 : Designate JN.1.40 (S:S31P, Mexico)
36cdaa3 - Cornelius Roemer, 2024-03-25 08:37:35 +0100 : Designate JN.1.41 (S:S1252F, on A29086T, USA)
bf6fa8b - Cornelius Roemer, 2024-03-25 08:39:31 +0100 : Designate JN.1.42 (C5581A, South America)
06e2b57 - Cornelius Roemer, 2024-03-25 08:43:34 +0100 : Designate JN.1.43 (A25237G), JN.1.43.1 (C19488T, C29218T, Brazil)
72653ed - Cornelius Roemer, 2024-03-25 08:50:27 +0100 : Designate KP.1.1.1 (S:K182N)
8aa6137 - Cornelius Roemer, 2024-03-25 09:00:54 +0100 : Designate JN.1.44 (ORF6:P57L)
2f4b63c - Federico Gueli, 2024-03-25 13:17:21 +0100 : Update lineage_notes.txt
0c04882 - Cornelius Roemer, 2024-03-26 17:39:36 +0100 : Designate 30 extra JN.1.23
b521ee2 - Cornelius Roemer, 2024-03-26 17:45:04 +0100 : Designate XDU (Recombinant lineage of BA.2.86.1, BA.2.86.1 (breakpoint between 11957-12729), Japan,)
2290342 - Cornelius Roemer, 2024-03-26 17:55:33 +0100 : Designate XDP.1 (S:E1092D, after ORF1a:L397P, ORF1a:H388Y)
0f6d6e1 - Cornelius Roemer, 2024-03-26 18:39:58 +0100 : Designate JN.2.2.1 (S:N487D, Netherlands)
bbeaa01 - Federico Gueli, 2024-03-27 07:34:53 +0100 : Update lineage_notes.txt
c542214 - Federico Gueli, 2024-03-27 10:04:35 +0100 : Update lineage_notes.txt
9e97eb9 - Cornelius Roemer, 2024-03-29 11:22:55 +0100 : Designate JN.1.8.3 (C13821T, C14925T)
5bddf8f - Cornelius Roemer, 2024-03-29 11:26:09 +0100 : Designate KY.1 (JN.1.8.2.1, ORF1a:N3774D, Nigeria)
1cb2994 - Cornelius Roemer, 2024-03-29 11:32:53 +0100 : Designate JN.14 (C29614T, S:S680F, Thailand/Japan)
f68f404 - Cornelius Roemer, 2024-03-29 11:35:59 +0100 : Designate JN.1.45 (G18756T)
0fb7bc5 - Memorable, 2024-03-30 13:44:57 +0800 : Update lineage_notes.txt
b9b6ec7 - Cornelius Roemer, 2024-04-02 14:05:49 +0200 : Designate XDV (XDE, JN.1, XDE, JN.1 (breakpoints between 19326-21608, 27915-28297, 28958-29535), from #2402) with 13 seqs)
30cec9b - Cornelius Roemer, 2024-04-02 14:07:37 +0200 : Designate XDV.1 (S:F456L (T22930A), on C11572T branch)
7d580c8 - Cornelius Roemer, 2024-04-02 14:34:17 +0200 : Designate JN.1.42.1 ( S:F59S)
d96b1ea - Cornelius Roemer, 2024-04-02 14:37:42 +0200 : Designate JN.1.46 (ORF1a:L3116F, T4885C)
82d8358 - Cornelius Roemer, 2024-04-02 14:41:29 +0200 : Designate JN.1.4.7 (ORF3a:G18D)
4a1ca73 - Cornelius Roemer, 2024-04-02 17:12:56 +0200 : Designate KV.2 (JN.1.4.5.2, S:T572I, ORF1a:P971L, C11956T, USA)
71451fa - Angie Hinrichs, 2024-04-02 18:46:44 -0700 : Merge pull request #2533 from FedeGueli/patch-32
07df22c - Angie Hinrichs, 2024-04-02 18:51:32 -0700 : Merge pull request #2535 from FedeGueli/patch-33
81da870 - Cornelius Roemer, 2024-04-03 17:49:04 +0200 : Designate KW.1.1 (S:F456L, ORF1b:R2009K, Australia/Japan)
1343104 - Cornelius Roemer, 2024-04-04 08:50:33 +0200 : Designate KZ.1 (JN.1.1.6 with ORF1b:V1092F), KZ.1.1 (S:R346T), KZ.1.1.1 (S:T572I)
c0fd244 - Cornelius Roemer, 2024-04-04 09:23:31 +0200 : Designate JN.1.7.3 (S:R346T)
1b26492 - Federico Gueli, 2024-04-04 16:05:52 +0200 : Update lineage_notes.txt
cd77b44 - Yat-sing Ng, 2024-04-05 21:40:51 +0800 : Update lineage_notes.txt
0ba3daf - Yat-sing Ng, 2024-04-05 21:43:08 +0800 : Update alias_key.json
e25cc5d - Yat-sing Ng, 2024-04-05 22:07:14 +0800 : Update lineage_notes.txt
d6b3019 - Angie Hinrichs, 2024-04-05 09:00:45 -0700 : Merge pull request #2537 from FedeGueli/patch-31
053a58c - Angie Hinrichs, 2024-04-05 09:01:36 -0700 : Merge pull request #2541 from Memorablea/patch-2
6246629 - Angie Hinrichs, 2024-04-05 09:02:00 -0700 : Merge pull request #2550 from FedeGueli/patch-34
859d2e1 - Angie Hinrichs, 2024-04-05 09:08:04 -0700 : Merge pull request #2551 from Over-There-Is/patch-7
fe1b485 - Yat-sing Ng, 2024-04-06 00:10:55 +0800 : Update lineage_notes.txt
771f02c - Angie Hinrichs, 2024-04-05 09:24:03 -0700 : Merge pull request #2552 from Over-There-Is/patch-8
452cb0a - aviczhl2, 2024-04-06 21:10:59 +0800 : add_1_from_main_31_from_lineage_proposal
158973c - Angie Hinrichs, 2024-04-12 16:09:06 -0700 : Merge pull request #2553 from aviczhl2/master
8fbd0bc - Cornelius Roemer, 2024-04-15 17:31:11 +0200 : Designate KP.4 (JN.1.11.1.4, C6070T, India), KP.4.1 (S:R346T, C19884T), KP.4.2 (S:R346T, S:K187R)
0f3e1f8 - Cornelius Roemer, 2024-04-15 17:35:53 +0200 : Designate KP.1.2 (S:T572I)
b0a0b07 - Cornelius Roemer, 2024-04-15 17:38:25 +0200 : Designate KP.2.3 (S:H146Q, ORF3a:K67N)
9fcb3e6 - Cornelius Roemer, 2024-04-15 18:00:18 +0200 : Designate JN.1.47 (C8074T, C7594T), JN.1.47.1 (S:S221L, USA/Mexico), JN.1.47.2 ( S:T572I, S:R683Q, USA)
52f3337 - Cornelius Roemer, 2024-04-15 18:04:28 +0200 : Designate JN.1.16.2 (C4777T), LA.1 (JN.1.16.2.1, S:R346T), LA.2 (S:R346I)
0c19ec3 - Cornelius Roemer, 2024-04-15 18:09:10 +0200 : Broaden JN.1.1.3 to not require ORF1b:H2388Y
b51c68c - Cornelius Roemer, 2024-04-15 18:12:35 +0200 : Designate JN.1.9.2 (S:R346T), LB.1 (JN.1.9.2.1, S:F456L)
be7e605 - Cornelius Roemer, 2024-04-15 18:15:49 +0200 : Designate JN.1.7.4 ( S:F456L (T22928C))
2a82248 - Cornelius Roemer, 2024-04-15 18:17:37 +0200 : Designate JN.1.24 (S:R346T)
dffbf6a - Cornelius Roemer, 2024-04-15 18:20:07 +0200 : Designate LC.1 (JN.1.1.7.1, S:R346T)
b179fe8 - Cornelius Roemer, 2024-04-15 18:20:52 +0200 : Add space after comma in lineage notes
12e5413 - Cornelius Roemer, 2024-04-15 18:26:00 +0200 : Designate JN.1.32.1 (S:Q183H)
b04426a - Cornelius Roemer, 2024-04-15 18:28:19 +0200 : Designate KW.1.2 ( S:K529T, Australia)
01c35fe - Cornelius Roemer, 2024-04-15 18:29:54 +0200 : Designate JN.1.8.4 (S:G946R)
67f48bf - Cornelius Roemer, 2024-04-15 19:31:39 +0200 : Designate JN.1.48 (G29134T, after T18471C, India) and JN.1.48.1 (S:S60P, S:R346T, S:F456L, after ORF3a:A99V)
a744a47 - Cornelius Roemer, 2024-04-16 05:21:46 +0200 : Fix error in lineages.csv: LB.2 -> LB.1
78063c1 - Federico Gueli, 2024-04-16 09:06:54 +0200 : Update lineage_notes.txt
8f3adea - Cornelius Roemer, 2024-04-16 19:58:29 +0200 : fix: one more LB.2 leftover -> LB.1
f84e7a6 - Angie Hinrichs, 2024-04-16 11:12:13 -0700 : Merge pull request #2561 from FedeGueli/patch-35
83f73f5 - Cornelius Roemer, 2024-04-18 13:30:35 +0200 : Designate XDW (Recombinant lineage of JN.2 (T1030C branch), XDA (breakpoint between 23424-23603), Japan, from sars-cov-2-variants/lineage-proposals#1471)
5a55c86 - Cornelius Roemer, 2024-04-18 13:36:09 +0200 : Designate XDQ.2 (S:N487D, Vietnam)
18a05f9 - Cornelius Roemer, 2024-04-18 13:37:13 +0200 : Desigante XDQ.3 (S:681H, Indonesia)

pango-designation - pango designation v1.26

Published by AngieHinrichs 7 months ago

Release notes

a4a5ba0 - Federico Gueli, 2024-02-04 19:28:32 +0100 : Update lineage_notes.txt
a2c9a60 - Cornelius Roemer, 2024-02-12 13:37:09 +0100 : Designate JN.1.4.3 (S:T572I) from #2487
48ee76d - Cornelius Roemer, 2024-02-12 13:41:40 +0100 : Designate XDT (recombinant of BA.2.86.4, GK.1 (breakpoint between 23673-24378), Ireland/UK, from #2485)
dc148ec - Cornelius Roemer, 2024-02-12 13:51:58 +0100 : Designate HK.13.2.1 (S:T250I, N:T379I, Greece, from #2480)
2fcf851 - Cornelius Roemer, 2024-02-12 13:56:32 +0100 : Designate KN.1 (GK.1.10.1.1, S:Y200C, Brazil) and KN.1.1 (S:N450D)
7651872 - Cornelius Roemer, 2024-02-12 13:59:11 +0100 : Designate JN.1.1.4 (S:V1264L, from #2476)
0bbbe00 - Cornelius Roemer, 2024-02-20 16:54:27 +0100 : Designate JN.1.23 (S:K444R, S:Y453F, ORF1a:A307V, ORF1a:P2144L, Brazil, from #2488)
4241e54 - Cornelius Roemer, 2024-02-22 19:30:19 +0100 : Designate KP.1 (JN.1.11.1.1, S:K1086R)
46a79f3 - aviczhl2, 2024-02-25 12:21:38 +0800 : add_3_autoref_from_main_and_10_from_lineage_proposals
569c1af - Cornelius Roemer, 2024-03-01 09:25:58 +0100 : Designate JN.1.7.1 (B.1.1.529.2.86.1.1.7.1, S:R346K, England)
7125b18 - Cornelius Roemer, 2024-03-01 09:32:17 +0100 : Designate JN.1.7.2 (ORF1b:C1563F, Americas)
a528c79 - Cornelius Roemer, 2024-03-01 16:22:25 +0100 : Designate KQ.1 (JN.1.4.3.1, S:R346T, USA)
1845c66 - Federico Gueli, 2024-03-01 17:01:12 +0100 : Update lineage_notes.txt
19cf1e5 - Cornelius Roemer, 2024-03-01 17:11:29 +0100 : Designate JN.1.13.1 (S:R346T, S:F59S, USA)
d262c30 - Cornelius Roemer, 2024-03-01 17:14:37 +0100 : Designate JN.1.1.5 (S:R346T)
77ac735 - Yat-sing Ng, 2024-03-03 15:09:04 +0800 : Update lineage_notes.txt
1cce500 - Cornelius Roemer, 2024-03-04 15:14:20 +0100 : Designate KR.1 (JN.1.1.5.1, S:F456L, after C28498T)
a29effe - Cornelius Roemer, 2024-03-04 15:24:40 +0100 : Designate KP.1.1 (JN.1.11.1.1.1, S:R346T)
5e932aa - Cornelius Roemer, 2024-03-04 15:51:54 +0100 : Designate KP.2 (JN.1.1.11.1.2, S:R346T on JN.1.11.1 polytomy)
92b5fbd - Cornelius Roemer, 2024-03-04 15:56:33 +0100 : Designate JN.1.24 (S:C1243F, USA)
3f22231 - Cornelius Roemer, 2024-03-04 16:01:11 +0100 : Designate XDK.1 (S:R346T, G11596A)
2817bce - Cornelius Roemer, 2024-03-04 16:08:16 +0100 : Designate JN.1.25 (C706T, A7708T, India) and JN.1.25.1 (S:R346T, India)
62759f0 - Cornelius Roemer, 2024-03-04 19:49:57 +0100 : Remove mistakenly committed .swp
788e5fe - Cornelius Roemer, 2024-03-04 19:50:38 +0100 : Remove mistakenly committed .command_log
ab76d4a - Cornelius Roemer, 2024-03-04 19:51:44 +0100 : Designate XDQ.1 (S:A475V, Japan)
c93fc79 - Cornelius Roemer, 2024-03-05 13:18:09 +0100 : Designate JQ.2 (S:R346T, G2944A, South Africa, from #2505)
a40d20b - Angie Hinrichs, 2024-03-05 10:10:47 -0800 : Merge pull request #2486 from FedeGueli/patch-28
aa82251 - Angie Hinrichs, 2024-03-05 10:18:22 -0800 : Merge pull request #2499 from aviczhl2/master
eb3d385 - Angie Hinrichs, 2024-03-05 10:19:13 -0800 : Merge pull request #2507 from FedeGueli/patch-29
fae598a - Angie Hinrichs, 2024-03-05 10:21:49 -0800 : Merge pull request #2509 from Over-There-Is/patch-6
1f458d4 - Cornelius Roemer, 2024-03-06 15:25:55 +0100 : Designate JN.13 (A14397G) and JN.13.1 (S:A475V) [Editor's note: lineage_notes.txt says JN.1.13 is "S:A1087S, after C26894T,C25680T, USA, from #2464" and JN.13.1 adds "S:R346T, S:F59S" and that is consistent with seqs in lineages.csv]

pango-designation - pango designation v1.25

Published by AngieHinrichs 8 months ago

Release notes

5b7b299 - Angie Hinrichs, 2024-01-18 11:04:12 -0800 : Remove 2339 names that map to multiple sequences in the UCSC UShER tree that are on different lineage branches.
f743d97 - Cornelius Roemer, 2024-01-21 22:18:51 +0100 : Designate JN.11 (S:V1104L, Asia, from sars-cov-2-variants/lineage-proposals#1303)
54f733f - Cornelius Roemer, 2024-01-21 23:58:44 +0100 : Designate JN.1.12 (S:F456V, ORF7a:A8T)
80a788e - Cornelius Roemer, 2024-01-22 00:04:13 +0100 : Designate JN.12 (S:F456V, ORF1a:A498G)
a6e6ad3 - Cornelius Roemer, 2024-01-22 00:42:37 +0100 : Designate JN.1.11.1 (S:F456L, India)
acc65d1 - Angie Hinrichs, 2024-01-22 17:22:03 -0800 : Merge pull request #2466 from AngieHinrichs/removeDupNames
cb7e158 - Cornelius Roemer, 2024-01-31 16:43:00 +0100 : Designate KM.1 (XBB.1.5.4.1, S:K478R, S:M177I, S:N185D, N:A155V, ORF1a:T3696A, Guinea/Senegal)
68ca039 - Cornelius Roemer, 2024-02-01 16:21:06 +0100 : Designate BA.2.87 (C18744T, no C9866T) and BA.2.87.1 (saltation with 15+ spike AA mutations, South Africa, from #2484)
ce9f9d0 - Cornelius Roemer, 2024-02-01 23:17:49 +0100 : Designate XDQ (ecombinant lineage of BA.2.86.1 and FL.15.1.1 (breakpoint between 223605 and 24377), from #2481
f39ed9e - Cornelius Roemer, 2024-02-01 23:23:34 +0100 : Designate GK.1.10.1 (S:A475V, C29668T, Brazil, from #2479)
3292a20 - Cornelius Roemer, 2024-02-01 23:30:25 +0100 : Designate XDR (Recombinant lineage of JD.1.1.1 and JN.1.1 (breakpoint between 11043 and 11726), Brazil, from #2477)
d68c064 - Cornelius Roemer, 2024-02-01 23:47:03 +0100 : Designate JN.1.13 (S:A1087S, USA) and JN.1.14 (S:R346S, USA)
1406788 - Cornelius Roemer, 2024-02-01 23:49:29 +0100 : Designate JN.1.15 (S:A688V)
c843c38 - Cornelius Roemer, 2024-02-01 23:51:10 +0100 : Designate JN.1.4.1 (S:E654V, Ireland)
7058743 - Cornelius Roemer, 2024-02-01 23:53:03 +0100 : Designate JN.1.2.1 (S:H1101Y, Ireland)
d2eec4d - Cornelius Roemer, 2024-02-01 23:55:25 +0100 : Designate JN.1.16 (S:F456L)
5438c32 - Cornelius Roemer, 2024-02-01 23:58:09 +0100 : Designate JN.1.17 (S:A222V, USA)
271f9e0 - Cornelius Roemer, 2024-02-02 16:35:10 +0100 : Designate JN.1.4.2 (S:N185D, USA, from #2462)
253610a - Cornelius Roemer, 2024-02-02 18:47:23 +0100 : Correct designations for BA.2.87 after discussion with @AngieHinrichs
425fe95 - Cornelius Roemer, 2024-02-04 14:55:23 +0100 : Designate JN.1.18 (S:R346T, directly on JN.1 polytomy)
0b504b4 - Cornelius Roemer, 2024-02-04 15:07:19 +0100 : Designate JN.1.19 (ORF8:I71V)
93188fd - Cornelius Roemer, 2024-02-04 15:14:41 +0100 : Designate JN.1.20 (S:S31F, directly on JN.1 polytomy)
ead98f6 - Cornelius Roemer, 2024-02-04 15:57:03 +0100 : Designate XDS (recombinant of EG.5.1.3, JN.3.2.1, EG.5.1.3 (breakpoints at 8294-8392 and 26834-27506)
cd1621e - Cornelius Roemer, 2024-02-04 16:04:11 +0100 : Designate JN.1.9.1 (S:T572I, ORF1a:A3143V)
761aec8 - Cornelius Roemer, 2024-02-04 16:06:16 +0100 : Designate JN.1.21 (S:H1058Y)
a90c8e3 - Cornelius Roemer, 2024-02-04 16:08:17 +0100 : Designate JN.1.22 (ORF1a:S505F, C13019T)
4a389ef - Angie Hinrichs, 2024-02-05 16:08:36 -0800 : Removing Slovakia/RNA/ names because they have many matches.

pango-designation - pango designation v1.24

Published by AngieHinrichs 9 months ago

Release notes

fb96d0a - Cornelius Roemer, 2023-10-12 23:14:36 +0200 : Designate BA.2.86.2 (ORF7a:E22D, South Africa/Botswana) with 25 seqs
bea249a - Cornelius Roemer, 2023-10-12 23:21:29 +0200 : Designate BA.2.86.3 (C222T, C1960T, T12775C, South Africa) with 25 seqs
6c3cbc3 - Cornelius Roemer, 2023-10-12 23:26:59 +0200 : Designate JQ.1 (BA.2.86.3.1, S:T95I, Denmark/France/South Africa) with 13 seqs
62ee71f - Cornelius Roemer, 2023-10-12 23:32:07 +0200 : Designate JN.2 (BA.2.86.1.2 with ORF1a:Y621C, Europe/North America) with 100 seqs
8424ad2 - Cornelius Roemer, 2023-10-12 23:34:17 +0200 : Designate JN.3 (BA.2.86.1.3, ORF1a:T2087I, Europe) with 60 seqs
b14b69a - Cornelius Roemer, 2023-10-12 23:50:19 +0200 : Designate GK.2.4 (S:K356T, USA-NY) with 15 seqs
f1b2dab - Cornelius Roemer, 2023-10-12 23:54:38 +0200 : Designate HK.12 (S:K356T, China/Singapore) with 12 seqs
4f9712c - Cornelius Roemer, 2023-10-12 23:58:51 +0200 : Designate EG.6.1.2 (S:V705I, Israel) with 80 seqs
c3904ca - Cornelius Roemer, 2023-10-13 00:09:30 +0200 : Designate HV.1.1 (S:K444T, on ORF1a:T4083M branch, USA) with 15 seqs
471889e - Cornelius Roemer, 2023-10-13 00:14:55 +0200 : Designate HV.1.2 (S:S514F, on ORF1a:T4083M branch, USA) and HV.1.3 (S:493L, USA)
ab3b625 - Cornelius Roemer, 2023-10-13 00:16:22 +0200 : Designate HV.1.4 (S:A1078S, USA) with 50 seqs
49cdcb4 - Cornelius Roemer, 2023-10-13 00:23:33 +0200 : Designate HK.13 (S:L455F (G22927C), China, 250 seqs) and HK.13.1 (C13378T, A24604G)
b123561 - Cornelius Roemer, 2023-10-13 00:25:33 +0200 : Designate HK.13.2 (S:F797L, S:D1153H) with 30 seqs
af79499 - Cornelius Roemer, 2023-10-13 00:29:02 +0200 : Designate HK.1.1 (S:456L (G22927T), China) with 40 seqs
2ee937c - Cornelius Roemer, 2023-10-13 00:31:29 +0200 : Designate HK.1.2 (S:455F (G22927C), S:T307I, China/New Zealand) with 50 seqs
c7550b1 - Cornelius Roemer, 2023-10-13 00:35:46 +0200 : Designate HK.14 (S:L455F (G22927C), on C11779T branch, China) with 80 seqs
04f540f - Cornelius Roemer, 2023-10-13 00:43:46 +0200 : Designate HK.15 (S:A262T, on C11779T branch) with 150 seqs
5283757 - Cornelius Roemer, 2023-10-13 00:47:41 +0200 : Designate EG.5.1.11 (S:K182Q, Indonesia) with 20 seqs
6ca5c26 - Cornelius Roemer, 2023-10-13 00:50:52 +0200 : JR.1 (EG.5.1.11.1, S:478R, ORF3a:Y91C, Indonesia) with 10 seqs
bd9a2f7 - Cornelius Roemer, 2023-10-13 00:52:38 +0200 : Designate JR.1.1 (S:L455F (G22927C)) with 10 seqs
dde47c8 - Cornelius Roemer, 2023-10-13 01:01:35 +0200 : Designate GA.2.1 (XBB.1.17.1.2.1, S:E554K) and GA.2.1.1 ( S:N450D, S:K478R)
561040b - Cornelius Roemer, 2023-10-13 01:05:11 +0200 : Designate GA.4.2 (S:K558N, S:G1124S, England/Italy) with 4 seqs
516ee4a - Cornelius Roemer, 2023-10-13 01:06:35 +0200 : Designate GA.4.3 (S:F186L, S:L585F, Greece/Romania) with 10 seqs
6106107 - Cornelius Roemer, 2023-10-13 01:08:51 +0200 : Designate GA.4.1.2 (S:T572I, England) with 10 seqs
521220b - Cornelius Roemer, 2023-10-13 01:12:33 +0200 : Designat HK.16 (N:P67S, S:A684V, S:V1264L) with 50 seqs
7362fc8 - Cornelius Roemer, 2023-10-13 01:15:01 +0200 : Designate HK.17 (S:S494P, China) with 50 seqs
1bf9c67 - Cornelius Roemer, 2023-10-13 01:18:07 +0200 : Designate HK.18 (S:L452R) with 30 seqs
d077888 - Cornelius Roemer, 2023-10-13 01:21:02 +0200 : Designate HK.19 (S:F157L) with 70 seqs
2fe3c52 - Cornelius Roemer, 2023-10-13 01:30:46 +0200 : Designate XBB.2.3.15 (ORF1a:I4308V)
8d36dfd - Cornelius Roemer, 2023-10-13 01:33:22 +0200 : Designate JS.1 (XBB.2.3.15.1, S:S256T) with 150 seqs
e5fbf04 - Cornelius Roemer, 2023-10-13 01:34:16 +0200 : Desingate JS.2 (S:T323I) with 100 seqs
7614167 - Cornelius Roemer, 2023-10-13 01:44:07 +0200 : Designate XCQ (Recombinant lineage of XBB.2.3 and XBB.1.5 (breakpoint between 23123-27431), Guatemala, from #2289) with 80 seqs
3acc442 - Cornelius Roemer, 2023-10-13 01:49:47 +0200 : Desingate XBB.2.3.16 (S:K478N, USA) with 15 seqs
45e216e - Cornelius Roemer, 2023-10-13 01:50:39 +0200 : Designate XBB.2.3.17 (S:N450D, USA) with 15 seqs
a4d823d - Cornelius Roemer, 2023-10-13 02:04:55 +0200 : Designate JD.2.1 (S:E554K, Brazil) with 20 seqs
a5fbef6 - Cornelius Roemer, 2023-10-13 02:24:49 +0200 : Designate GW.5.2 (N:T379I) and GW.5.3 (T20310C, C28519T)
7dcb5ae - Cornelius Roemer, 2023-10-13 02:28:03 +0200 : Designate GW.5.3.1 (S:A475V, S:G184A) with 10 seqs
2626654 - Cornelius Roemer, 2023-10-13 15:05:57 +0200 : Designate HW.1.2 (G15957A, Australia) and HW.1.3 (N:T391I, Australia)
0f50930 - Cornelius Roemer, 2023-10-13 15:32:39 +0200 : Designate XBC.1.6.5, XBC.1.6.6, JT.1 (XBC.1.6.6.1, S:V445A)
17d3581 - Cornelius Roemer, 2023-10-13 15:51:37 +0200 : Withdraw HK.1.1 as smaller than thought (only 6 sequences have 257V and G22927T)
cfe2ed8 - Cornelius Roemer, 2023-10-13 15:59:13 +0200 : Designate extra BA.2.86
032d300 - Memorable, 2023-10-13 22:23:41 +0800 : Update lineage_notes.txt forBA.86.2 and JN.2
bf14f63 - Cornelius Roemer, 2023-10-13 22:12:26 +0200 : Designate GL.2 (XAY.1.1.1.2, ORF1a:S723P, South Korea/Japan/HongKong) with 10 seqs
9088232 - Cornelius Roemer, 2023-10-13 22:15:47 +0200 : Designate GL.3 (XAY.1.1.1.3, ORF1a:P1640S, Germany) with 300 seqs
ba10206 - Cornelius Roemer, 2023-10-13 22:17:17 +0200 : Add extra XAY.1.1.1 designations
550f9b2 - Angie Hinrichs, 2023-10-13 13:34:39 -0700 : Merge pull request #2306 from ciscorucinski/fix/workflow/issue-milestone-collector
b06d726 - Angie Hinrichs, 2023-10-13 13:41:56 -0700 : Merge pull request #2324 from Memorablea/patch-1
1a5955d - Cornelius Roemer, 2023-10-13 23:05:28 +0200 : Designate XCR (recombinant lineage of GK.1.1 and FU.1 (breakpoint between 23674-24372), USA, from #2323)
3223321 - Cornelius Roemer, 2023-10-15 11:43:54 +0200 : Designate GK.5 (S:G181V, Brazil) and GK.5.1 (S:E180K)
6fe25ac - Cornelius Roemer, 2023-10-15 11:45:31 +0200 : Designate GK.6 (XBB.1.5.70.6, S:N556K, S:E583A) with 50 seqs
61604b2 - Cornelius Roemer, 2023-10-15 11:46:52 +0200 : Designate GK.7 (XBB.1.5.70.7, N:D3G) with 70 seqs
af7f5c4 - Cornelius Roemer, 2023-10-15 11:48:51 +0200 : Designate GK.8 (XBB.1.5.70.8, ORF:E55Q, Brazil) with 50 seqs
1c2b15f - Cornelius Roemer, 2023-10-15 11:50:52 +0200 : Designate GK.8.1 (XBB.1.5.70.8.1, S:N185I, S:A475V) with 15 seqs
d6326f6 - Cornelius Roemer, 2023-10-15 11:54:08 +0200 : Designate GK.9 (XBB.1.5.70.9, S:T307S, Brazil) with 10 seqs
51bb3dd - Cornelius Roemer, 2023-10-15 12:01:03 +0200 : Designate GK.10 (XBB.1.5.70.10, S:E554G, Brazil) with 15 seqs
92bde5e - Cornelius Roemer, 2023-10-15 12:02:13 +0200 : Designate GK.11 (XBB.1.5.70.11, S:T883I, Brazil) with 8 seqs
71796df - Cornelius Roemer, 2023-10-15 12:09:03 +0200 : Designate GK.1.5 (XBB.1.5.70.1.5, S:F186L, ORF1a:T1597I, Brazil) with 15 seqs
ab068f9 - Cornelius Roemer, 2023-10-15 12:11:07 +0200 : Designate GK.1.6 (XBB.1.5.70.1.6, ORF3a:V50I, Colombia) with 150 seqs
8e45078 - Cornelius Roemer, 2023-10-15 12:12:27 +0200 : Designate GK.1.6.1 (XBB.1.5.70.1.6.1, S:A475V, ORF1a:I114V, Colombia) with 15 seqs
ceff314 - Cornelius Roemer, 2023-10-15 12:23:42 +0200 : Add extra GK.1.2 designations (especially some without T16974C) and remove erroneously added #2093 from notes
2e02c0f - Cornelius Roemer, 2023-10-15 12:26:58 +0200 : Designate GK.1.2.1 (XBB.1.5.70.1.2.1, S:A475V, ORF1a:D147G, ORF1a:D2592Y, ORF1a:T4175I, ORF1b:N1426K, Brazil/Colombia) with 12 seqs
441b454 - Cornelius Roemer, 2023-10-15 12:29:11 +0200 : Designate GK.1.7 (S:F186L, T11695C, Europe)
fa557e4 - Cornelius Roemer, 2023-10-15 12:35:50 +0200 : Designate GK.1.8 (S:E554K, S:A475V, Brazil) with 20 seqs
22a348a - Cornelius Roemer, 2023-10-15 12:45:18 +0200 : Designate GK.12 (XBB.1.5.70.12, S:T76I, S:N450D, Brazil) with 5 seqs
686748e - Cornelius Roemer, 2023-10-15 12:52:19 +0200 : Designate GK.1.9 (C17010T, USA)
26ababf - Cornelius Roemer, 2023-10-15 13:02:12 +0200 : Designate XBB.1.16.25 (ORF1a:K510E, C16611T, A29221G) with 300 seqs
cc16c73 - Cornelius Roemer, 2023-10-15 13:04:07 +0200 : Designate XCS (Recombinant lineage of GK.1.9 and XBB.1.16.25 (breakpoint between 223674-25044), USA, from #2311) with 30 seqs
c58b4a4 - Cornelius Roemer, 2023-10-15 13:15:00 +0200 : Designate GK.1.1.1 (C28432T, donor of XCR) with 190 seqs
bd0e486 - Cornelius Roemer, 2023-10-15 13:22:27 +0200 : Designate FU.1.1 (XBB.1.16.1.1.1, S:K1266R) with 160 seqs
24d57cc - Cornelius Roemer, 2023-10-15 13:25:09 +0200 : Designate FU.1.1.1 (XBB.1.16.1.1.1.1, S:N74S, USA) with 70 seqs
b4e8ab1 - Cornelius Roemer, 2023-10-15 14:33:52 +0200 : Designate HG.3 (XBB.2.3.8.3, S:S255F, South Korea) with 35 seqs
fc51cdc - Cornelius Roemer, 2023-10-15 14:35:55 +0200 : Designate HG.1.1 (S:A1190S, South Korea) with 40 seqs
987a9be - Cornelius Roemer, 2023-10-15 14:40:24 +0200 : Designate XBB.2.3.18 (S:F456L (T22930A), S:N450D, S:1231A, India) with 8 seqs
70e727f - Cornelius Roemer, 2023-10-15 14:44:02 +0200 : Designate GS.6 (XBB.2.3.11.6, S:A845S, Wales) with 70 seqs
1293572 - Cornelius Roemer, 2023-10-15 14:46:23 +0200 : Designate GS.4.1.1 (XBB.2.3.11.4.1.1, S:P561S, France) with 50 seqs
4a0edbe - Cornelius Roemer, 2023-10-15 14:51:19 +0200 : Designate GS.7 (XBB.2.3.11.7, ORF1a:L204I, C14925T) with 150 seqs
0470496 - Cornelius Roemer, 2023-10-15 14:52:14 +0200 : Designate GS.7.1 (XBB.2.3.11.7.1, S:E180Q, Tunisia) with 18 seqs
32ea609 - Cornelius Roemer, 2023-10-15 14:56:04 +0200 : Designate GS.8 (XBB.2.3.11.8, ORF3a:I179V, Vietnam) with 150 seqs
7804cb5 - Cornelius Roemer, 2023-10-15 15:01:05 +0200 : Designate GJ.6 (XBB.2.3.3.6, S:F456L (T22930A), M:G6S, India) with 15 seqs
d6cfeab - Cornelius Roemer, 2023-10-15 15:02:43 +0200 : Designate GJ.7 (XBB.2.3.3.7, S:E183K, Australia/NewZealand) with 37 seqs
604740d - Cornelius Roemer, 2023-10-15 15:12:18 +0200 : Designate JU.1 (XBB.2.3.12.1, S:N148T, S:Q218R, S:N450D, Georgia/Russia) with 12 seqs
3ab2f9c - Cornelius Roemer, 2023-10-15 15:16:11 +0200 : Designate JV.1 (DV.7.1.2.1, S:G485R, France) with 50 seqs
777ef39 - Cornelius Roemer, 2023-10-15 15:17:13 +0200 : Designate JV.2 (DV.7.1.2.2, S:V772I, France/Spain) with 20 seqs
9b30a50 - Cornelius Roemer, 2023-10-15 15:49:49 +0200 : Designate JC.2 (XBB.1.41.1.2, S:D339R, ORF1a:V1056L, Greece) with 50 seqs
dd2cf17 - Cornelius Roemer, 2023-10-15 15:51:35 +0200 : Designate JC.3 (XBB.1.41.1.3, S:N703I, South Africa) with 12 seqs
16a3fd7 - Cornelius Roemer, 2023-10-15 15:52:41 +0200 : Designate JC.4 (XBB.1.41.1.4, S:N148S) with 20 seqs
d3d7c09 - Cornelius Roemer, 2023-10-15 15:54:42 +0200 : Designate JC.5 (XBB.1.41.1.5, ORF1a:P1220L, N:H300Y) with 300 seqs
b5acc84 - Cornelius Roemer, 2023-10-15 15:57:10 +0200 : Designate JC.6 (S:I1227V, South Africa) with 10 seqs
6624cc7 - Cornelius Roemer, 2023-10-15 15:58:42 +0200 : Designate XBB.1.41.3 (C17850T, C25276T, C29416G, Africa) with 170 seqs
6e5d22b - Cornelius Roemer, 2023-10-15 16:01:00 +0200 : Designate JW.1 (XBB.1.41.3.1, S:K478R, ORF1a:L397F, South Africa/DRC) with 15 seqs
786fce1 - Cornelius Roemer, 2023-10-15 16:17:47 +0200 : Designate FL.30.1 (XBB.1.9.1.30.1, S:A852S, Greece) with 40 seqs
3bfa8a4 - Cornelius Roemer, 2023-10-15 16:18:39 +0200 : Designate FL.30.1 (XBB.1.9.1.30.1, S:A852S, Greece) with 40 seqs
4ae0f4c - Cornelius Roemer, 2023-10-15 16:20:18 +0200 : Designate FL.13.2.1 (S:D178H, South Korea) with 80 seqs
7353561 - Cornelius Roemer, 2023-10-15 16:25:40 +0200 : Designate FL.13.4 (XBB.1.9.1.13.4, S:K182E, S:F456L (T22928C), Pakistan) with 20 seqs
d917828 - Cornelius Roemer, 2023-10-15 16:26:31 +0200 : Designate FL.13.4.1 (XBB.1.9.1.13.4.1, S:Q14H, S:A484T) with 12 seqs
73069df - Cornelius Roemer, 2023-10-15 16:29:23 +0200 : Designate FL.13.5 (XBB.1.9.1.13.5, S:F456L (T22928C), ORF1a:T1000I, ORF1a:L2527M, Chile/Argentina)
78a8f34 - Cornelius Roemer, 2023-10-15 17:17:20 +0200 : Designate JG.4 (C1684T, Europe) with 200 seqs
3ab5873 - Cornelius Roemer, 2023-10-15 17:24:30 +0200 : Designate DV.7.1.3 (S:A262S, on branch ORF1a:K3353R) with 30 seqs
73e23b2 - Cornelius Roemer, 2023-10-15 17:27:39 +0200 : Designate DV.7.1.4 (G28001T, on branch ORF1a:K3353R) with 400 seqs
c57b914 - Cornelius Roemer, 2023-10-15 17:34:53 +0200 : Designate DV.7.1.5 (N:T135I, Spain) with 500 seqs
85496f1 - Cornelius Roemer, 2023-10-15 17:41:15 +0200 : Designate XCT (Recombinant lineage of JG.4, DV.7.1, JG.4 (breakpoints at 18430-19885 and 25960-27506), Europe, from sars-cov-2-variants/lineage-proposals#811)
7926d25 - Cornelius Roemer, 2023-10-15 17:54:59 +0200 : Designate XBC.1.7.1 (S:N185S, Philiippines) and XBC.1.7.2 (S:T299I, Australia)
69fe1f6 - Cornelius Roemer, 2023-10-15 17:56:14 +0200 : Add extra XBC.1.7 designations
a2fa445 - Cornelius Roemer, 2023-10-15 19:22:41 +0200 : Designate FL.23.2 (S:S494P, ORF1a:P2256S, Philippines) and FL.23.2.1 (S:P521T, Philippines)
4806a9b - Cornelius Roemer, 2023-10-15 19:32:32 +0200 : Designate XCU (Recombinant lineage of XBC.1.7.1 and FL.23.2.1 (breakpoint 22329-22577), Philippines, from sars-cov-2-variants/lineage-proposals#935) with 3 seqs
9f285db - Cornelius Roemer, 2023-10-15 19:50:10 +0200 : Designate HH.2.1 (XBB.2.3.2.2.1, S:K478R, England/France) and HH.3 (XBB.2.3.2.3, S:D1260Y, Japan)
14ec7d1 - Cornelius Roemer, 2023-10-15 19:51:28 +0200 : Designate HH.4 (XBB.2.3.2.4, S:A845S, India)
382b56b - Cornelius Roemer, 2023-10-15 19:53:05 +0200 : Designate HH.5 (XBB.2.3.2.5, S:K147N, India) with 140 seqs
efcd0ee - Cornelius Roemer, 2023-10-15 19:55:08 +0200 : Designate HH.6 (S:K478R, ORF1a:D935E, India) with 10 seqs
e7a016a - Cornelius Roemer, 2023-10-15 19:57:46 +0200 : Designate HH.7 ( XBB.2.3.2.7, ORF1a:T1788M, India) with 400 seqs
8264110 - Cornelius Roemer, 2023-10-15 19:59:34 +0200 : Designate HH.8 (XBB.2.3.2.8, S:Q607R) and HH.8.1 (XBB.2.3.2.8.1, S:K478R)
c505575 - Cornelius Roemer, 2023-10-15 20:04:22 +0200 : Designate GE.1.4 (XBB.2.3.10.1.4, ORF1a:P3359S) and GE.1.5 (XBB.2.3.10.1.5, G6352A, C11653T, T16242A)
2a69d7e - Cornelius Roemer, 2023-10-15 20:11:43 +0200 : Designate GE.1.6 (XBB.2.3.10.1.6, S:L118I) with 50 seqs
083357e - Cornelius Roemer, 2023-10-15 20:37:07 +0200 : Designate XBB.2.3.19 (S:G184V, ORF1a:P1786L, India) with 500 seqs
e4f431b - Cornelius Roemer, 2023-10-15 20:41:56 +0200 : Designate JY.1 (XBB.2.3.19.1, S:E654K, S:K478T (rev), India) with 65 seqs
beefc0b - Cornelius Roemer, 2023-10-15 20:43:55 +0200 : Designate JY.1.1 (XBB.2.3.19.1, S:T1117K) with 40 seqs
325315c - Cornelius Roemer, 2023-10-15 21:01:10 +0200 : Designate JG.3.1 (EG.5.1.3.3.1, S:T307I) with 170 seqs
d75dabe - Cornelius Roemer, 2023-10-15 21:03:26 +0200 : Designate HK.2.1 (XBB.1.9.2.5.1.1.2.1, S:L455F, Singapore) with 50 seqs
3b5d3d1 - Cornelius Roemer, 2023-10-15 21:05:00 +0200 : Designate HK.3.4 (S:P809S)
c1e681c - Cornelius Roemer, 2023-10-15 21:06:19 +0200 : Designate HK.3.5 ( S:P174S, Singapore) with 80 seqs
68f0859 - Cornelius Roemer, 2023-10-15 21:09:44 +0200 : Designate HK.3.6 (S:G181R, China) with 50 seqs
e0fe839 - Cornelius Roemer, 2023-10-15 21:12:39 +0200 : Designate HK.3.7 (S:V171I, Singapore/China) with 30 seqs
e268dbf - Cornelius Roemer, 2023-10-15 22:22:19 +0200 : Designate HK.11.1 (S:L455F, 22927T) with 50 seqs, designate FL.35.1 (S:478R, South Africa)
a0386e2 - Cornelius Roemer, 2023-10-15 22:51:43 +0200 : Designate GA.7 (XBB.1.17.1.7, ORF1a:T1429I, Cote d'Ivoire) with 65 seqs
d00ef95 - Cornelius Roemer, 2023-10-15 22:53:06 +0200 : Designate GA.7.1 ( S:P521S, S:N148T, S:S494P, S:Q218R) with 20 seq
7303764 - Cornelius Roemer, 2023-10-15 22:54:03 +0200 : Designate GA.7.2 (S:H245Y) with 30 seqs
cf15db0 - Cornelius Roemer, 2023-10-15 22:57:34 +0200 : Designate GA.8 (C3619T, C27389T, Congo) with 70 seqs
4810cff - Cornelius Roemer, 2023-10-15 22:58:32 +0200 : Designate GA.8.1 (S:K182E, S:S494P, S:E554K, France/Belgium) with 7 seqs
04da949 - Cornelius Roemer, 2023-10-15 23:00:18 +0200 : Designate GA.9 (ORF3a:K67N,T7534C,C29719A) with 65 seqs
86be75f - Cornelius Roemer, 2023-10-15 23:03:10 +0200 : Designate GA.10 (ORF1a:V4520I) with 10 seqs
3965633 - Cornelius Roemer, 2023-10-15 23:25:29 +0200 : Designate XCV (Recombinant lineage of XBB.1.16.19, EG.5.1.3, XBB.1.16.19 (breakpoints 9694-11749 and 22996-27064), USA/Canada, from #2210)
76e2699 - Cornelius Roemer, 2023-10-15 23:52:32 +0200 : Designate XBB.2.3.20 (N:A267S, S:210del, Bangladesh, from sars-cov-2-variants/lineage-proposals#328)
f44449c - Cornelius Roemer, 2023-10-15 23:55:40 +0200 : Designate XCW (Recombinant lineage of XBB.2.3.20, XBB.1.16.15 (breakpoint 22996-27430), India/USA from #2260) with 80 seqs
2838fe9 - Federico Gueli, 2023-10-16 00:01:30 +0200 : Update lineage_notes.txt
856edb1 - Cornelius Roemer, 2023-10-16 00:24:48 +0200 : Designate XBB.1.5.107 (C24130T, Argentina/Uruguay/Bolivia), JZ.1 (XBB.1.5.107.1, S:F456L)
b14c491 - Cornelius Roemer, 2023-10-16 00:28:07 +0200 : Designate FD.5 (XBB.1.5.15.5, ORF10:A8V, Peru) and FD.5.1 (S:F456L (T22928C), S:N185D, Peru)
6a16571 - Cornelius Roemer, 2023-10-16 00:30:54 +0200 : Designate HE.2 (FE.1.1.1.2, S:H1058Y, USA) with 25 seqs
ae65d87 - Cornelius Roemer, 2023-10-16 00:34:29 +0200 : Designate FE.1.1.5 (S:E554K, Brazil) with 70 seqs
f8fd4e6 - Cornelius Roemer, 2023-10-16 00:40:25 +0200 : Designate KA.1 (XBB.1.5.103.1, S:E554K, Argentina/France/Spain) with 70 seqs
6234f2e - Cornelius Roemer, 2023-10-16 00:41:53 +0200 : Designate GN.1.2 ( XBB.1.5.73.1.2, S:Q321L) with 30 seqs
98aa641 - Cornelius Roemer, 2023-10-16 00:45:39 +0200 : Designate GN.1.3 (XBB.1.5.73.1.3, S:L455F (G22927T)) with 10 seqs
8777c36 - Cornelius Roemer, 2023-10-16 01:37:30 +0200 : Add JY.1.1 to lineage notes (forgot it)
0f46002 - Cornelius Roemer, 2023-10-16 02:07:03 +0200 : Designate XCY (Recombinant lineage of EG.5.1.3, GK.4 (or GK.3.1) (breakpoint 21719-22569), France, from sars-cov-2-variants/lineage-proposals#887) with 10 seqs
b36a0f3 - Cornelius Roemer, 2023-10-16 02:36:00 +0200 : Designate XCZ (Recombinant lineage of EG.5.1.1, GK.1.1 (breakpoint 18492-21718), France/Italy/England) with 17 seqs
22c1047 - Federico Gueli, 2023-10-16 10:52:23 +0200 : Update lineage_notes.txt
1c917f8 - Federico Gueli, 2023-10-16 10:57:15 +0200 : Update lineage_notes.txt
088ca7a - Federico Gueli, 2023-10-16 11:13:08 +0200 : Update lineage_notes.txt
beea59d - Cornelius Roemer, 2023-10-16 17:15:43 +0200 : fix: remove hCoV-19/ prefix from JY.1 designations in lineages.csv
99def8b - Angie Hinrichs, 2023-10-16 08:52:01 -0700 : Merge pull request #2328 from FedeGueli/patch-17
64c782e - Angie Hinrichs, 2023-10-16 08:53:04 -0700 : Merge pull request #2329 from FedeGueli/patch-18
1582bb9 - Angie Hinrichs, 2023-10-16 08:53:29 -0700 : Merge pull request #2330 from FedeGueli/patch-19
fb76386 - Angie Hinrichs, 2023-10-16 08:54:02 -0700 : Merge pull request #2331 from FedeGueli/patch-20
6935006 - Cornelius Roemer, 2023-10-16 17:53:08 +0200 : Designate FY.8 (XBB.1.22.1.8, S:T572I) with 200 seqs
0edc7ed - Cornelius Roemer, 2023-10-16 17:58:59 +0200 : Broaden FY.6 to not require T2935C
fa554d1 - Cornelius Roemer, 2023-10-16 18:06:01 +0200 : Designate FY.6.1 (S:S939F, Japan) and FY.6.2 (ORF1a:A3143V, ins_S:216:SLQGN, Japan)
066dbbb - Cornelius Roemer, 2023-10-16 18:08:39 +0200 : Designate FY.9 (XBB.1.22.1.9, S:Q675K, ORF1a:D220E, ORF1a:C667Y, Indonesia) with 50 seqs
1a048d5 - Cornelius Roemer, 2023-10-16 18:11:06 +0200 : Designate FY.1.4 (XBB.1.22.1.1.3, S:478R, S:D1084G, USA) and FY.1.4.1 (S:I569T, S:N185S, USA)
9534ad4 - Cornelius Roemer, 2023-10-16 18:13:15 +0200 : Designate FY.5.1 (XBB.1.22.1.5.1, S:T572I) with 25 seqs
7f3883f - Cornelius Roemer, 2023-10-16 18:22:28 +0200 : Designate FY.5.1.1 (S:M153I, S:F186S, S:S247N) with 5 seqs
4d6f729 - Angie Hinrichs, 2023-10-16 09:44:32 -0700 : Merge pull request #2283 from ciscorucinski/lineage_notes_RaphaelRaphael
277b9e0 - Cornelius Roemer, 2023-10-16 19:07:07 +0200 : Designate extra XCN
01e32ba - Cornelius Roemer, 2023-10-17 00:25:44 +0200 : Designate HN.2 (FL.1.5.1.2) and HN.2.1 (S:Q836R)
a5105d2 - Cornelius Roemer, 2023-10-17 00:29:27 +0200 : Designate HN.3 (S:S494P) with 90 seqs
ffa4130 - Cornelius Roemer, 2023-10-17 00:34:45 +0200 : Designate HN.3.1 (S:E554D) with 50 seqs
fd6c39c - Cornelius Roemer, 2023-10-17 00:40:35 +0200 : Designate HN.4 (ORF1a:T403I) with 400 seqs
b16ba74 - Cornelius Roemer, 2023-10-17 00:44:11 +0200 : Designate HN.5 (FL.1.5.1.5, S:E554K)
135aa0f - Federico Gueli, 2023-10-17 11:45:39 +0200 : Update lineage_notes.txt
d188492 - Federico Gueli, 2023-10-17 12:06:19 +0200 : Update lineage_notes.txt
7d3babf - Federico Gueli, 2023-10-17 12:17:51 +0200 : Update lineage_notes.txt
ca04b0b - Angie Hinrichs, 2023-10-17 06:33:55 -0700 : Merge pull request #2333 from FedeGueli/patch-21
720cf2f - Angie Hinrichs, 2023-10-17 06:35:17 -0700 : Merge pull request #2334 from FedeGueli/patch-22
f290593 - Angie Hinrichs, 2023-10-17 06:36:36 -0700 : Merge pull request #2335 from FedeGueli/patch-23
f8f6d23 - Cornelius Roemer, 2023-10-17 21:51:02 +0200 : Designate HN.6 (ORF1a:D1933A)
7eb5f36 - Cornelius Roemer, 2023-10-17 21:52:52 +0200 : Designate GA.4.1.3 (XBB.1.17.1.4.1.3, S:185insLAG, S:F186D, N:K370N, ORF1a:V1339I) with 15 seqs
c458133 - Cornelius Roemer, 2023-10-18 14:52:58 +0200 : Designate 4 extra XCY sequences
0d2c219 - Cornelius Roemer, 2023-10-18 17:26:24 +0200 : Remove low-quality XCY sequence from lineages.csv
749694f - Cornelius Roemer, 2023-10-18 17:35:53 +0200 : Remove pooled gingko bioworks samples from lineages.csv
36aee64 - Cornelius Roemer, 2023-10-18 17:38:51 +0200 : Remove two XCT designations that are possibly a different lineage
5b83cc1 - Cornelius Roemer, 2023-10-18 17:39:36 +0200 : Add extra XCT designations
e7ee3c5 - Cornelius Roemer, 2023-10-18 18:49:33 +0200 : Designate XDA (Recombinant lineage of XBB.1.16, HN.5 (breakpoint 22102-22927), from sars-cov-2-variants/lineage-proposals#862)
ee56f95 - Cornelius Roemer, 2023-10-18 19:01:15 +0200 : Remove erroneous XCT designations
f1e5c72 - Cornelius Roemer, 2023-10-18 23:28:07 +0200 : Designate XDB (Recombinant lineage of XBB.1.16.19, non-XBB.1.16/EG.5/XBB.2.3 XBB (breakpoint ~28000, depending on donor), Indonesia)
1bf4123 - Cornelius Roemer, 2023-10-18 23:45:02 +0200 : Designate XDC (Recombinant lineage of HK.3, XBB.1.16 (breakpoint 22996-27506), China/Singapore, from sars-cov-2-variants/lineage-proposals#902)
18ebd9d - aviczhl2, 2023-10-20 08:39:40 +0800 : add 2 refs from main page and 78 from lineage-proposal
8cee4af - Angie Hinrichs, 2023-10-20 16:56:45 -0700 : Merge pull request #2338 from aviczhl2/master
71cf97b - Cornelius Roemer, 2023-11-02 05:11:52 +0100 : Designate HK.20 (S:L455F, on ORF1a:P2144S branch, China) and HK.20.1 (S:G482R)
8c291c7 - Cornelius Roemer, 2023-11-12 00:28:23 +0100 : Designate JN.4 (BA.2.86.1 with S:A475V but lacking C12815T), with 35 seqs
ff6f0f0 - Cornelius Roemer, 2023-11-12 12:18:07 +0100 : Add extra HK.3.2 designations
31270ad - Cornelius Roemer, 2023-11-12 12:32:39 +0100 : Designate JD.1.2.1 (S:E554Q, from sars-cov-2-variants/lineage-proposals#870) with 50 seqs
186ea76 - Cornelius Roemer, 2023-11-12 12:42:20 +0100 : Designate HK.21 (S:T470N, S:796H, from #2367) with 30 seqs
321e3e2 - Cornelius Roemer, 2023-11-12 12:46:48 +0100 : Designate XCT.1 (S:S704L, from #2358) with 30 seqs
2d3115a - Cornelius Roemer, 2023-11-12 13:19:42 +0100 : Designate HK.22 (S:L455F, S:L452Q, Australia/China, from #2357) with 14 seqs
b7fda81 - Cornelius Roemer, 2023-11-12 13:29:42 +0100 : Designate XBB.1.16.26 (S:L455F, S:F456L, China) with 50 seqs
e16f043 - Cornelius Roemer, 2023-11-14 14:37:34 +0100 : Designate JN.5 (BA.2.86.1.5, N:T135I) with 100 seqs
db63874 - Cornelius Roemer, 2023-11-14 14:40:34 +0100 : Designate JN.6 (BA.2.86.1.6, S:V193L) with 40 seqs
3dea796 - Cornelius Roemer, 2023-11-17 01:06:59 +0100 : Designate JG.3.2 (S:N450D, Canada, from #2376) with 50 seqs
6ebf3a4 - Cornelius Roemer, 2023-11-17 01:10:48 +0100 : Designate JG.3.3 (S:A83S, Belgium) with 40 seqs
9f55753 - Cornelius Roemer, 2023-11-17 01:15:08 +0100 : Designate GK.1.10 (Orf1a:I573V, Orf1a:T4129I, Orf9b:T95M, Brazil, from #2375) with 200 seqs
2020508 - Cornelius Roemer, 2023-11-17 01:20:40 +0100 : Designate JN.7 (BA.2.86.1 with S:G594S, Denmark) with 22 seqs
f53c4e4 - Cornelius Roemer, 2023-11-17 01:27:00 +0100 : Designate JN.8 (S:T299I, Sweden/Denmark) with 26 seqs
7697276 - Cornelius Roemer, 2023-11-17 01:28:34 +0100 : Designate JN.9 (S:M1229I, Netherlands) with 30 seqs
8844830 - Cornelius Roemer, 2023-11-17 01:38:30 +0100 : Designate JN.3.1 (S:L922F, ORf7a:T28I, Spain) and HR.1.1 (XBB.1.5.77.1.1, S:K304N, Costa Rica, from #2372)
5561004 - Cornelius Roemer, 2023-11-17 02:01:09 +0100 : Tag #2363 for JG.3.3
5a74af8 - Cornelius Roemer, 2023-11-17 04:22:22 +0100 : Designate XDD (Recombinant of EG.5.1.1, JN.1, EG.5.1.1 (breakpoints at 6541-7842 and 25416-26270), USA/France/Spain)
a99787b - Cornelius Roemer, 2023-11-17 17:06:15 +0100 : Designate extra XDD: Spain/PV-HUD-96107835/2023
b09f648 - Cornelius Roemer, 2023-11-21 07:33:21 +0100 : Designate JN.2.1 (S:S31F, Sweden/Australia) with 28 seqs
0a75629 - Cornelius Roemer, 2023-11-21 07:40:39 +0100 : Designate JN.10 (S:A475V, on T3565C branch with JN.1, Spain/France) with 25 seqs
1aef931 - Cornelius Roemer, 2023-11-21 07:52:52 +0100 : Designate BA.2.86.4 (S:A222V, ORF1a:V3892A) with 18 seqs
5186c33 - Cornelius Roemer, 2023-11-21 08:01:19 +0100 : Designate JN.5.1 (S:A475S, T2950A, A28052G, C29541T, England/Belgium) with 14 seqs
d15a745 - Cornelius Roemer, 2023-11-21 08:09:59 +0100 : Designate JD.1.1.4 (S:E554G, Australia, from #2380) wioth 50 seqs
b9034d2 - Cornelius Roemer, 2023-11-21 08:17:22 +0100 : Designate HK.3.8 (S:E554K, China/Sweden, from #2377) with 30 seqs
6dc5507 - Cornelius Roemer, 2023-11-21 08:20:04 +0100 : Designate HK.3.2.1 (S:Q677H) with 80 seqs
9585f56 - Cornelius Roemer, 2023-11-21 08:31:11 +0100 : Designate FL.15.4 (S:Q14H, on G6819A branch, from #2359) with 100 seqs
037fd76 - Cornelius Roemer, 2023-11-21 08:33:21 +0100 : Designate HK.8.1 (S:D1153Y, China, from #2356) with 100 seqs
1f6b1c1 - Cornelius Roemer, 2023-11-21 08:49:55 +0100 : Designate XDE (Recombinant lineage of GW.5.1 and FL.13.4 (breakpoint at 24034-24046), Pakistan, from #2352) with 15 seqs
91b149c - Cornelius Roemer, 2023-11-21 08:57:01 +0100 : Designate KB.1 (EG.5.1.8.1, S:E654V, China, from #2347) with 100 seqs
f38283e - Cornelius Roemer, 2023-11-21 09:25:58 +0100 : Designate XBB.1.16.27 (S:F456L, S:E554K, ORF1a:A3889T, France, from #2345) with 100 seqs
f9269e8 - Cornelius Roemer, 2023-11-24 05:15:22 +0100 : Designate XDF (Recombinant lineage of XBB* (with C335T) and EG.5.1.3 (breakpoint around 2335-9692), from sars-cov-2-variants/lineage-proposals#1088) with 50 seqs
f2ba14a - Cornelius Roemer, 2023-11-24 05:37:11 +0100 : Designate EG.5.2.4 (S:K679R, on ORF3a:I118V branch) with 25 seqs
9e5da1f - Cornelius Roemer, 2023-11-24 05:44:08 +0100 : Designate FL.37 (Alias of XBB.1.9.1.37, C547T, C29614T) with 180 seqs
d7b0265 - Cornelius Roemer, 2023-11-24 05:46:17 +0100 : Designate XDG (Recombinant lineage of FL.37 and EG.5.2.4 (breakpoint at 6729-9693), from #2348) with 25 seqs
a699198 - Cornelius Roemer, 2023-11-24 06:32:41 +0100 : Designate HK.3.2.2 (S:N185D, Australia) with 30 seqs
99ae758 - Cornelius Roemer, 2023-11-24 06:36:32 +0100 : Designate HK.3.9 (S:T732I, Australia) with 50 seqs
12691b3 - Cornelius Roemer, 2023-11-24 06:43:34 +0100 : Designate HK.23 (ORF8:A65V) with 310 seqs
b83d9aa - Cornelius Roemer, 2023-11-24 06:44:59 +0100 : Designate HK.23.1 (S:L455F, ORF1a:T2906N) with 246 seqs
b47c3ca - Cornelius Roemer, 2023-11-24 06:46:12 +0100 : Designate HK.23.1.1 (S:A348S, China/Canada) with 70 seqs
2110183 - Cornelius Roemer, 2023-11-24 06:54:25 +0100 : Designate HK.24 (S:E654K) with 50 seqs
7759638 - Cornelius Roemer, 2023-11-24 06:55:31 +0100 : Designate HK.24.1 (S:L455F, Australia) with 43 seqs
514be1e - Cornelius Roemer, 2023-11-24 06:58:24 +0100 : Designate HK.3.10 (S:A1078S) with 100 seqs
738adab - Cornelius Roemer, 2023-11-24 07:01:30 +0100 : Designate HK.3.11 (S:A475V, Finland/Denmark/Sweden) with 25 seqs
0c6878b - Cornelius Roemer, 2023-11-27 04:48:55 +0100 : Designate HK.25 (S:K356T, S:H681R, N:P365L, and 10 more nucs, Germany/Austria/France/US, from #2327 and sars-cov-2-variants/lineage-proposals#986)
7db6627 - Cornelius Roemer, 2023-11-28 11:31:04 +0100 : Designate KC.1 (FL.1.5.2.1, S:S490P, ORF1a:T4129I, ORF1a:S723F, Europe) and KC.1.1 (S:V1228L, England)
ce3f29b - Cornelius Roemer, 2023-11-28 13:26:22 +0100 : Withdraw HK.3.11 as study of EG.5.1.1 shows that "HK.3.11" is actually part of EG.5.1.1 + 14988C sublineage not HK.3
778efcf - Cornelius Roemer, 2023-11-28 13:37:59 +0100 : Designate HK.26 (S:L455F, ORF3a:L52I, on 14988C branch, Finland) with 600 seqs
e4da6b3 - Cornelius Roemer, 2023-11-28 13:39:05 +0100 : Designate HK.26.1 (S:A475V, Finland, formerly HK.3.11) with 45 seqs
9c45579 - Cornelius Roemer, 2023-11-28 14:02:16 +0100 : Designate HK.27 (ORF1a:T1589I, China), HK.27.1 (S:L455F, China), HK.27.1.1 (S:Q14H, China)
7cb206e - Cornelius Roemer, 2023-11-28 14:07:03 +0100 : Designate HK.28 (C19170T, China)
d0cdcaa - Cornelius Roemer, 2023-11-28 14:09:29 +0100 : Designate HK.29 (ORF1a:G2509D, North America) with 700 seqs
7b8fb1e - Cornelius Roemer, 2023-11-28 14:11:27 +0100 : Designate HK.30 (T26609C, China) with 900 seqs
bcc23cc - Cornelius Roemer, 2023-11-28 14:21:58 +0100 : Designate HK.31 (ORF1a:G604S)
e849bed - Cornelius Roemer, 2023-11-28 14:24:05 +0100 : Designate HK.32 (C27059T)
6e3305f - Cornelius Roemer, 2023-11-28 14:25:07 +0100 : Designate HK.32.1 (S:L455F)
43c2d40 - Cornelius Roemer, 2023-11-28 14:34:22 +0100 : Designate EG.5.1.12 (T26972C, C28909T)
1d02439 - Cornelius Roemer, 2023-11-28 14:36:21 +0100 : Designate EG.5.1.13 (C12439T)
9266cca - Cornelius Roemer, 2023-11-28 14:39:43 +0100 : Designate EG.5.1.14 (C16017T, C19524T) and EG.5.1.15 (ORF1a:T753I)
1d8fb47 - Cornelius Roemer, 2023-11-28 14:42:25 +0100 : Designate EG.5.1.16 (ORF1b:A2431V)
0647dae - Cornelius Roemer, 2023-11-28 15:13:29 +0100 : Undo HK.32(.1) designation as it seems to be artefact, only 42 seqs in GISAID, not 300
5a8103c - Cornelius Roemer, 2023-11-28 15:20:43 +0100 : Designate EG.5.1.17 (S:L455F (G22927C), China)
034c2c4 - Cornelius Roemer, 2023-11-28 15:22:11 +0100 : Designate EG.5.1.18 (ORF1a:G3002S, ORF3a:S220I)
0807c23 - Cornelius Roemer, 2023-11-28 15:25:32 +0100 : Designate EG.5.1.19 (S:L455F, ORF1b:K1383R, ORF3a:M260K) with 140 seqs
682de0e - Cornelius Roemer, 2023-11-28 15:33:30 +0100 : Designate KB.2 (S:R214H), KB.3 (S:A83T), KB.4 (S:T95I)
e5d4273 - Cornelius Roemer, 2023-11-28 15:44:58 +0100 : Designate BA.2.86.5 (S:I197V, C5575T, T6085C, T23278C)
ad90952 - Cornelius Roemer, 2023-11-28 16:24:01 +0100 : Designate JN.1.1 (ORF1a:F499L, C11747T, France)
0bc95d2 - Cornelius Roemer, 2023-11-28 17:38:24 +0100 : Designate DV.7.1.6 (S:Q183K, N:A217S)
334de42 - Cornelius Roemer, 2023-11-28 17:39:21 +0100 : Designate DV.7.1.7 (S:V90I)
5490ffc - Cornelius Roemer, 2023-11-28 17:50:39 +0100 : Designate JB.1.1 (XBB.1.5.53.1.1, S:K478R, South Africa)
2c95200 - Cornelius Roemer, 2023-11-29 16:28:09 +0100 : Designate JR.1.1.1 (S:K356Q, Thailand) with 18 seqs
66cc3db - Cornelius Roemer, 2023-11-30 11:47:04 +0100 : Deisgnate GY.1.1 (S:F456L, S:L455F, China) with 50 seqs
8e1a2da - Cornelius Roemer, 2023-11-30 11:50:09 +0100 : Designate GY.1.1.1 (S:A475V, Thailand)
37a695a - Cornelius Roemer, 2023-11-30 12:32:21 +0100 : Designate FY.8.1 (S:478R, T4579A) with 100 seqs
57d244d - Cornelius Roemer, 2023-11-30 16:48:21 +0100 : Designate EG.10.1.1.1 (XBB.1.9.2.10.1.1, ORF1a:V2703L, ORF1a:V3683I, ORF1b:P1570S)
d0b5628 - Cornelius Roemer, 2023-12-01 11:09:28 +0100 : Designate BN.1.2.8 (S:N703K, Russia)
6e1a0a6 - Cornelius Roemer, 2023-12-01 11:11:21 +0100 : Designate XDH (Recombinant lineage of BN.1.2.8 and XBB.1.9.1 (or XBB.1.22) (breakpoint between 22630-22663), Lithuania/Belarus)
f3e9fb3 - Cornelius Roemer, 2023-12-01 11:19:56 +0100 : Designate XBC.1.3.1 (ORF1a:Q455K, ORF1a:T4174I, ORF1a:V2061A, ORF1b:S759N, Australia/New Zealand) with 1000 seqs
b81fd89 - Cornelius Roemer, 2023-12-01 11:22:36 +0100 : Designate KD.1 (XBC.1.3.1.1, S:R346S, Australia) with 40 seqs
3300cd3 - Cornelius Roemer, 2023-12-01 11:28:15 +0100 : Designate KD.2 (ORF1a:M3661L, ORF1a:M3934I, Australia/New Zealand), KD.3 (XBC.1.3.1.3, C10519T, C19524T, New Zealand), KD.4 ( XBC.1.3.1.4, ORF1a:K394R, ORF1a:L730F, ORF1a:T965I, Australia/Japan)
f5ad0e7 - Cornelius Roemer, 2023-12-01 11:32:03 +0100 : Designate KD.5 (XBC.1.3.1.5, S:L244F, Australia)
b419533 - Cornelius Roemer, 2023-12-01 13:49:37 +0100 : Designate JP.1.1 (CH.1.1.31.1, S:G1219V, ORF1a:T1542I, South Africa) with 15 seqs
10d1bb4 - Cornelius Roemer, 2023-12-02 13:38:55 +0100 : Designate JN.1.1.1 (S:T572I after C9142T, France/Sweden/Poland) with 20 seqs
3a8e590 - Cornelius Roemer, 2023-12-02 13:46:51 +0100 : Designate JN.1.2 (S:M1229I, USA/Canada) with 40 seqs
4813e2f - Cornelius Roemer, 2023-12-02 14:21:07 +0100 : Designate HV.1.5 (S:L1265F, USA/Canada) with 150 seqs
ffdf027 - Cornelius Roemer, 2023-12-02 14:23:18 +0100 : Designate HV.1.6 (ORF1a:T1794I, ORF1a:P2018S, Canada/USA) with 400 seqs
6c64902 - Cornelius Roemer, 2023-12-02 14:24:32 +0100 : Designate HV.1.6.1 ( S:S704L, Canada) with 100 seqs
57891f2 - Cornelius Roemer, 2023-12-02 14:25:55 +0100 : Designate HV.1.7 (S:S221L, Canada) with 70 seqs
23f0643 - Cornelius Roemer, 2023-12-02 14:37:26 +0100 : Designate JD.1.1.5 ( S:Q677R, USA/Canada) with 40 seqs
52ecee7 - Cornelius Roemer, 2023-12-02 14:39:20 +0100 : Designate JD.1.1.6 (S:M153V, Brazil) with 15 seqs
a60930a - Cornelius Roemer, 2023-12-02 15:07:37 +0100 : Designate FY.5.2 (S:L176F) with 70 seqs
f32c7d6 - Cornelius Roemer, 2023-12-02 15:10:27 +0100 : Designate FY.5.3 (S:A222V, Singapore/Japan) with 50 seqs
a7277a5 - Cornelius Roemer, 2023-12-02 15:38:28 +0100 : Designate KE.1 (GW.5.1.1.1, S:F186S, England/Wales) with 50 seqs
50e7dd7 - Cornelius Roemer, 2023-12-02 15:40:07 +0100 : Designate KE.2 (S:S704L, UK) with 15 seqs
8ee41ec - Cornelius Roemer, 2023-12-02 15:41:29 +0100 : Designate KE.3 (ORF1a:L3641S, ORF1a:T5131I, ORF7a:M1K, UK) with 300 seqs
59ba6cf - Cornelius Roemer, 2023-12-02 15:47:27 +0100 : Designate GY.9 (S:F186S, Europe) with 50 seqs
1231b4b - Cornelius Roemer, 2023-12-02 15:51:13 +0100 : Designate HK.3.11 (XBB.1.9.2.5.1.1.3.11, S:F186S, China)
b1f5bb0 - Cornelius Roemer, 2023-12-02 15:58:00 +0100 : Designate HK.3.12 ( S:A688T, USA) and HK.3.13 ( S:Q14R, China)
fde1fd9 - Cornelius Roemer, 2023-12-02 16:00:32 +0100 : Designate HK.32 (S:Q14R, ORF1a:S2193F, China)
7ad122e - Cornelius Roemer, 2023-12-02 16:05:07 +0100 : Designate HK.33 (S:L455F on C2644T branch, North America)
893f654 - Cornelius Roemer, 2023-12-02 16:07:20 +0100 : Designate HK.34 (S:F186S, ORF1a:V3660M, on C2644T branch, Singapore)
372aae1 - Cornelius Roemer, 2023-12-02 19:44:17 +0100 : Desigante FY.5.4 (S:T572I, ORF1a:D3009N, ORF1a:Y4077C on A6019G branch)
622245d - Cornelius Roemer, 2023-12-02 19:45:37 +0100 : Designate FY.5.5 (ORF1a:M2796I)
c91bcf1 - Cornelius Roemer, 2023-12-02 19:46:46 +0100 : Designate FY.5.5.1 (S:T572I)
45544bc - Cornelius Roemer, 2023-12-02 19:53:30 +0100 : Designate FY.8.1.1 (S:P521Q, ORF1b:V1149L)
2f2a87f - Cornelius Roemer, 2023-12-02 19:56:54 +0100 : Designate HK.34.1 (S:K356T, Singapore)
29b9e3d - Cornelius Roemer, 2023-12-02 20:03:04 +0100 : Designate KF.1 (FL.15.1.1.1, S:P251H, Australia/Canada)
ebc4ac1 - Cornelius Roemer, 2023-12-02 20:04:07 +0100 : Designate KF.2 ( S:E183D, England/Australia/New Zealand)
9699a3c - Memorable, 2023-12-03 13:22:08 +0800 : Update lineage_notes.txt
38394f3 - Cornelius Roemer, 2023-12-03 12:35:06 +0100 : Designate GA.10.1 ( S:L455F, S:F456L, S:K478R)
7a8e13a - aviczhl2, 2023-12-11 10:49:22 +0800 : add_1_ref_from_main_page_and_54_from_lineage_proposal
40e637b - Angie Hinrichs, 2023-12-11 08:58:35 -0800 : Merge pull request #2409 from aviczhl2/master
b777af9 - Angie Hinrichs, 2023-12-15 15:41:09 -0800 : Merge pull request #2397 from Memorablea/patch-1
61ef3fc - Cornelius Roemer, 2023-12-17 08:48:51 +0100 : Designate JD.1.1.7 (ORF1b:R2257S) with 400 seqs
4433b81 - Cornelius Roemer, 2023-12-17 09:09:35 +0100 : Designate JD.1.1.8 (ORF1a:N1094K, without C19185T, Brazil) with 200 seqs
04a5849 - Cornelius Roemer, 2023-12-17 09:13:53 +0100 : Designate JD.1.2.2 (XBB.1.5.102.1.2.2, S:A1078T, Brazil) with 40 seqs
c4b325f - Cornelius Roemer, 2023-12-17 09:38:36 +0100 : Designate FY.1.2.1 (S:W64L)
81d752f - Cornelius Roemer, 2023-12-17 09:40:32 +0100 : Designate FY.1.2.2 (S:V1129I) with 200 seqs
1acd0df - Cornelius Roemer, 2023-12-17 09:42:22 +0100 : Designate FY.1.2.3 (S:D215H)
2efc9a1 - Cornelius Roemer, 2023-12-17 09:57:55 +0100 : Designate XBB.1.16.28 (S:V1230A, S:Q613H, S:Q675K, Russia) with 300 seqs
fdc5ffd - Cornelius Roemer, 2023-12-17 10:06:06 +0100 : Designate JF.3 (S:L455F, S:Q14H, S:S810L, USA/Australia)
42e991c - Cornelius Roemer, 2023-12-17 10:22:30 +0100 : Designate XBB.1.16.30 ( S:E554Q, on C7765T branch, USA/Germany)
1bf8560 - Cornelius Roemer, 2023-12-17 10:26:35 +0100 : Designate XBB.1.16.31 (T9004C, on C7765T branch)
1883968 - Cornelius Roemer, 2023-12-17 10:32:56 +0100 : Designate XDJ (Recombinant lineage of XBB.1.16.6 and HK.3.1 (breakpoint between 14857 and 16877), France, from sars-cov-2-variants/lineage-proposals#997) Resolves sars-cov-2-variants/lineage-proposals#997
40f0683 - Cornelius Roemer, 2023-12-17 10:46:54 +0100 : Designate XBB.1.5.108 (S:F456L, S:K304N)
ce3f061 - Cornelius Roemer, 2023-12-17 10:50:31 +0100 : Designate XCF.3 (S:R78M) with 45 seqs
67d6881 - Cornelius Roemer, 2023-12-17 10:53:37 +0100 : Designate XBB.1.5.109 (S:F456L, ORF1a:T654A)
97c319f - Cornelius Roemer, 2023-12-17 10:56:09 +0100 : Designate XBB.1.5.110 (ORF1aT4129I, Mexico)
99ee0c5 - Cornelius Roemer, 2023-12-17 11:06:27 +0100 : Designate XDA.1 (S:L176F)
3106b90 - Cornelius Roemer, 2023-12-17 11:18:41 +0100 : Designate XBB.2.3.21 (S:T883I, ORF1a:D3042N, 670T reversion, Japan)
4e3d1e5 - Cornelius Roemer, 2023-12-17 11:23:02 +0100 : Designate XBB.2.3.22 ( S:S937T, ORF8:K94T, Romania/Bulgaria)
2efdd29 - Cornelius Roemer, 2023-12-17 11:37:57 +0100 : Rename JD.2.2 to the correct JD.1.2.2 in lineages.csv
6e78c60 - Cornelius Roemer, 2023-12-17 19:34:41 +0100 : Designate XDK (Recombinant lineage of XBB.1.16.11 (likely) and JN.1.1.1 (breakpoint between 5315 and 6182), France, from #2415
c1741f5 - Cornelius Roemer, 2023-12-17 19:50:40 +0100 : Designate DV.7.1.8 (S:T961M, Spain)
c77220a - Cornelius Roemer, 2023-12-17 19:53:38 +0100 : Designate KG.1 (DV.7.1.5.1, S:M153I)
6cc02d3 - Cornelius Roemer, 2023-12-17 19:55:57 +0100 : Designate KG.2 (S:H49Y, S:A264D, S:G485R, Spain/Canada)
80ce1cc - Cornelius Roemer, 2023-12-17 19:57:16 +0100 : Designate DV.7.1.9 (S:R1185H, Australia)
bde0910 - Cornelius Roemer, 2023-12-17 20:09:49 +0100 : Designate GE.1.2.1 (XBB.2.3.10.1.2.1, S:478T, S:A376S)
f84dfde - Cornelius Roemer, 2023-12-17 20:11:43 +0100 : Designate JG.3.4 (XBB.1.9.2.5.1.3.3.4, S:478R, USA)
7f94a43 - Cornelius Roemer, 2023-12-17 20:13:50 +0100 : Designate FL.38 (S:K478R, S:Q613H, C25482T, Russia)
80be7b8 - Cornelius Roemer, 2023-12-17 20:16:47 +0100 : Designate HN.4.1 ( S:A1020S)
c5c8ede - Cornelius Roemer, 2023-12-17 20:17:47 +0100 : Designate HN.4.1.1 (S:I68T, S:L452R, S:E554K, New Zealand/Canada)
9666613 - Cornelius Roemer, 2023-12-17 20:19:01 +0100 : Designate HN.4.2 (S:Q14H, Georgia/Russia)
4b2f568 - Cornelius Roemer, 2023-12-17 20:21:02 +0100 : Designate FL.39 (ORF1a:E663K, Russia)
9a30b22 - Cornelius Roemer, 2023-12-17 20:21:54 +0100 : Designate FL.39.1 (S:K478R, S:P521S, Russia)
66d1db1 - Cornelius Roemer, 2023-12-17 20:23:52 +0100 : Designate FL.40 ( ORF1a:I3758V, Russia)
85628e7 - Cornelius Roemer, 2023-12-17 20:28:24 +0100 : Designate FL.24.1 (S:478R, T9139C, C24919T, Russia)
b89aa1c - Cornelius Roemer, 2023-12-17 20:31:14 +0100 : Designate FL.1.8 (S:K478R, S:P521T, M:I8V, Russia)
4296c42 - Federico Gueli, 2023-12-18 10:50:59 +0100 : Update lineage_notes.txt
d83cc43 - Angie Hinrichs, 2023-12-18 17:18:32 -0800 : Merge pull request #2417 from FedeGueli/patch-24
d93e7fa - Cornelius Roemer, 2023-12-20 11:32:00 +0100 : Designate JE.1.1.1 (S:V1122A, from #2390)
dcd0f40 - Cornelius Roemer, 2023-12-20 11:37:43 +0100 : Designate KH.1 (JE.1.1.1.1, S:E554K, on N:L13F, ORF1a:R135S (reversion) branch, from #2390)
6330f6e - Cornelius Roemer, 2023-12-20 16:28:54 +0100 : Designate JF.1.1 (XBB.1.16.6.1, ORF1a:S2030L) and JF.1.1.1 (S:A475V, ORF2a:P2005S)
c0e493d - Cornelius Roemer, 2023-12-20 16:31:11 +0100 : Designate JF.1.1.2 (XBB.1.16.6.1.1.2, S:V1264L)
62729dd - Cornelius Roemer, 2023-12-20 16:33:20 +0100 : Designate JF.4 (ORF1a:S212L, ORF8:A15V)
8ccac36 - Cornelius Roemer, 2023-12-20 17:41:14 +0100 : Designate JN.1.3 (ORF8:Q18*, Netherlands)
cd0b1e1 - Cornelius Roemer, 2023-12-21 18:17:01 +0100 : Designate GK.1.8.1 (S:K187I, S:A222P, Brazil/Paraguay)
9ff2ee0 - Cornelius Roemer, 2023-12-21 18:22:09 +0100 : Desigante GK.1.11 (S:A475V, ORF1a:P309L, Brazil)
9412002 - Cornelius Roemer, 2023-12-21 18:23:26 +0100 : Designate GK.1.11.1 (S:I68V, Brazil)
5527de8 - Cornelius Roemer, 2023-12-21 18:30:24 +0100 : Add extra JW.1 designations
932c46a - Cornelius Roemer, 2023-12-21 18:31:08 +0100 : Designate JW.1.1 (XBB.1.41.3.1.1, S:Q14K, South Africa)
5b80f92 - Cornelius Roemer, 2023-12-21 18:36:18 +0100 : Designate JC.5.1 ( S:Q173K, USA)
72a1e52 - Cornelius Roemer, 2023-12-21 18:43:06 +0100 : Designate GN.1.4 (S:G181V, Peru)
c3c3ced - Cornelius Roemer, 2023-12-21 18:55:15 +0100 : Designate XBB.1.16.32 (S:S490P, South Africa/USA)
67e00ec - Cornelius Roemer, 2023-12-21 18:57:36 +0100 : Designate KJ.1 (XBB.1.16.32.1, S:T573I, ORF1a:P1659L, South Africa)
5d46166 - Cornelius Roemer, 2023-12-21 18:59:55 +0100 : Designate FL.2.7 (ORF1a:A2618T)
2837a93 - Cornelius Roemer, 2023-12-21 19:00:57 +0100 : Designate FL.2.7.1 (S:K478R on ORF1a:V3718F branch, South Africa)
d1290fa - Federico Gueli, 2023-12-26 09:22:48 +0100 : Update lineage_notes.txt
e1ebc80 - Angie Hinrichs, 2023-12-28 10:58:46 -0800 : Merge pull request #2427 from FedeGueli/patch-26
53b94b5 - Angie Hinrichs, 2024-01-08 10:01:36 -0800 : Withdraw lineage KD.5 -- an indel artefact caused the false appearance of S:L244F as explained in #2405. (#2443)
20ddbad - Cornelius Roemer, 2024-01-08 19:28:58 +0100 : Designate JN.1.4 (ORF1a:T170IORF1a:T170I, Denmark/Singapore, from #2381)
e424d0f - Cornelius Roemer, 2024-01-08 19:52:59 +0100 : Designate XDL (Recombinant lineage of EG.5.1.1 and non-EG.5 (breakpoint between 25573-29624) with S:L455F and S:I1114T, China, from #2351) with 150 seqs
6077c40 - Federico Gueli, 2024-01-08 21:43:50 +0100 : Update lineage_notes.txt
b65a86e - Angie Hinrichs, 2024-01-08 13:29:28 -0800 : Merge pull request #2444 from FedeGueli/patch-27
136279f - Cornelius Roemer, 2024-01-09 12:23:29 +0100 : Designate HV.1.8 (S:T208M, USA) from #2432
f6e4c4f - Cornelius Roemer, 2024-01-09 12:38:54 +0100 : Designate HV.1.9 (S:N211I, S:T1117I, New Zealand)
5f780df - Cornelius Roemer, 2024-01-09 12:41:21 +0100 : Designate HV.1.10 (S:R452W, USA)
4fc3a3c - Cornelius Roemer, 2024-01-09 12:43:41 +0100 : Designate JN.1.5 (ORF1b:V1271T, Singapore/Malaysia/Indonesia, from #2419)
688fcf1 - Cornelius Roemer, 2024-01-09 12:56:15 +0100 : Designate XDD.1 (S:S704L) and XDD.1.1 (S:I584V)
c02a8bd - Cornelius Roemer, 2024-01-09 12:57:27 +0100 : Designate XDD.2 (S:T307I)
c584da4 - Cornelius Roemer, 2024-01-09 12:59:30 +0100 : Designate JN.2.2 (S:T572I, N:G25C, ORF1a:L3644F, Netherlands)
1ced272 - Cornelius Roemer, 2024-01-09 13:00:33 +0100 : Designate JN.2.3 (S:V193L, from #2442)
e6c531c - Cornelius Roemer, 2024-01-09 13:02:20 +0100 : Designate JN.2.4 (S:L242F, Sweden)
68c48ac - Cornelius Roemer, 2024-01-09 13:16:39 +0100 : Designate JN.2.5 (S:L455S, Canada, USA, Lithuania)
7511f5f - Cornelius Roemer, 2024-01-09 13:21:55 +0100 : Designate JN.1.1.2 (S:G181E, France)
f68bfad - Cornelius Roemer, 2024-01-09 13:52:17 +0100 : Designate HN.8 (S:ins248KRD, ORF1a:E2042D, not requiring S:494P, Haiti/USA, from #2438)
f240a76 - Cornelius Roemer, 2024-01-09 14:00:36 +0100 : Designate JN.1.1.3 (S:R346T, ORF1b:H2388Y, France/Sweden)
5625be4 - Cornelius Roemer, 2024-01-09 14:06:53 +0100 : Designate JN.1.6 (G22627A) and JN.1.6.1 (S:R346T, Sweden)
d86f724 - Cornelius Roemer, 2024-01-09 14:10:04 +0100 : Designate JN.1.7 (S:T572I, S:E1150D, USA/France)
ede4d8f - Cornelius Roemer, 2024-01-09 14:13:51 +0100 : Designate JN.1.8 (ORF7a:T28I) and JN.1.8.1 (S:T572I, USA/Denmark)
678e57c - Cornelius Roemer, 2024-01-09 14:15:51 +0100 : Designate JN.1.9 (S:Q183H, USA/UK/Canada)
9e6fcf5 - Cornelius Roemer, 2024-01-10 15:35:27 +0100 : Designate FW.1.1.1 (S:A684T, ORF1a:S2285F, ORF1a:K3353R, UK)
28b294f - Cornelius Roemer, 2024-01-10 15:41:30 +0100 : Designate HK.3.14 (S:A475V, ORF1b:2378T, England/Australia)
3e67b22 - Cornelius Roemer, 2024-01-10 16:02:27 +0100 : Designate XDM (Recombinant lineage of XDA, GW.5, XDA (breakpoints between 22107-22926 and 24047-25838), from sars-cov-2-variants/lineage-proposals#1163)
a1041ca - Cornelius Roemer, 2024-01-10 16:21:36 +0100 : Designate KK.1 (XBB.1.5.102.1.1.8.1, S:D1153H, Brazil/USA)
fc2ce2c - Cornelius Roemer, 2024-01-10 16:22:29 +0100 : Designate KK.2 (XBB.1.5.102.1.1.8.2, S:N481K, Brazil)
9b26d72 - Cornelius Roemer, 2024-01-10 20:19:52 +0100 : Designate KL.1 (HV.1.6.1.1, S:K444N, Canada) and KL.1.1 (S:H1101Y, Canada)
bec1039 - Cornelius Roemer, 2024-01-10 20:22:18 +0100 : Designate HV.1.11 (S:N450D, USA)
65d1e22 - Cornelius Roemer, 2024-01-11 15:53:08 +0100 : Designate JN.1.10 (S:T95I, USA/Canada)
1e13380 - Cornelius Roemer, 2024-01-11 15:57:58 +0100 : Designate JN.1.11 (S:V1104L, C7113T, India, from #2446)
63fdb80 - Cornelius Roemer, 2024-01-11 18:49:17 +0100 : Update lineage_notes.txt: fix for JN.1.11
2e4625a - aviczhl2, 2024-01-15 02:20:55 +0800 : add_5_ref_from_main_page_49_from_lineage_proposals
d17ffe9 - Cornelius Roemer, 2024-01-15 17:52:52 +0100 : Add extra HK.33, HK.34, HK.34.1 designations
87d92a1 - Yat-sing Ng, 2024-01-16 02:03:02 +0800 : Update lineage_notes.txt
cd3327a - Cornelius Roemer, 2024-01-16 19:35:17 +0100 : Designate XDN (Recombinant lineage of JN.1.1 and JD.1 (breakpoint between 24379 and 24989), from #2448)
2c80397 - Cornelius Roemer, 2024-01-16 19:44:50 +0100 : Designate XDP (Recombinant lineage of JN.1.4 and FL.15 (breakpoint between 26834 and 27809), from #2451)
bc21f6f - Cornelius Roemer, 2024-01-16 20:00:28 +0100 : Designate JN.3.2 (N:H300Y, ORF1a:P892S) and JN.3.2.1 (S:F456V, N:S327L)
b3b812d - Angie Hinrichs, 2024-01-16 11:57:28 -0800 : Merge pull request #2457 from aviczhl2/master
57b0226 - Angie Hinrichs, 2024-01-16 12:10:31 -0800 : Merge pull request #2460 from Over-There-Is/patch-5

pango-designation - pango designation v1.23

Published by AngieHinrichs about 1 year ago

Release notes

52c2083 - aviczhl2, 2023-08-19 01:21:00 +0800 : add 1 ref from main page and 3 refs from sars-cov-2-variants/lineage-proposals
31def30 - Angie Hinrichs, 2023-08-21 10:40:50 -0700 : Merge pull request #2199 from aviczhl2/master
1c8d6e4 - Cornelius Roemer, 2023-08-22 01:37:08 +0200 : Designate FW.1.1 (XBB.1.28.1.1.1, S:N148T, UK) with 50 seqs
5c181b8 - Cornelius Roemer, 2023-08-22 01:45:19 +0200 : Designate JC.1 (XBB.1.41.1.1, S:K77R, Japan/Hawaii) and XBB.1.41.2 (S:S494P)
7b6a943 - Cornelius Roemer, 2023-08-22 01:57:26 +0200 : Designate GA.4.1 (XBB.1.17.1.4.1, S:K478R, S:S704L, S:E554K, USA/Qatar) with 5 seqs
1b2a93d - Cornelius Roemer, 2023-08-22 02:02:06 +0200 : Designate GE.1.1 (XBB.2.3.10.1.1, S:E554K, Bangladesh/Singapore) with 30 seqs
6e850c3 - Cornelius Roemer, 2023-08-22 02:03:44 +0200 : Designate GE.1.2 (XBB.2.3.10.1.2, S:N148T, Kenya) with 40 seqs
688cb33 - Cornelius Roemer, 2023-08-22 02:23:06 +0200 : Designate XBB.1.5.102 (C6896T, C14085T, C19488T, Brazil-Amazonas) with 1300 seqs
9953957 - Cornelius Roemer, 2023-08-22 02:25:53 +0200 : Designate JD.1 (XBB.1.5.102, S:L455F, S:F456L (T22928C), A14634G, T28282C, Brazil, from #2203) with 60 seqs
2d25a8d - Federico Gueli, 2023-08-22 09:51:54 +0200 : Update lineage_notes.txt
7b1683c - Angie Hinrichs, 2023-08-22 11:22:47 -0700 : Merge pull request #2204 from FedeGueli/master-2
328785b - Cornelius Roemer, 2023-08-23 23:55:56 +0200 : Designate FL.1.5.2 (S:N481K, S:H681R, England/France/Denmark/US) with 8 seqs
5140e40 - Cornelius Roemer, 2023-08-24 00:20:55 +0200 : Designate JB.2.1 (XBB.1.5.53.2.1, S:H245Y, S:E554D, South Africa) with 10 seqs
24b7e71 - Cornelius Roemer, 2023-08-24 00:28:47 +0200 : Designate HK.6 (EG.5.1.1.6, S:D253G, ORF1a:A1923T, UK/USA) with 100 seqs
b2febbe - Cornelius Roemer, 2023-08-24 00:41:57 +0200 : Designate GS.2 (XBB.2.3.11.2, S:T470N, Singapore/Brunei) with 20 seqs
63bc309 - Cornelius Roemer, 2023-08-24 00:45:49 +0200 : Designate GS.3 (XBB.2.3.11.3, S:R190S, USA/UK) with 20 seqs
3760d6c - Cornelius Roemer, 2023-08-24 00:49:55 +0200 : Designate GS.4 (XBB.2.3.11.4, M:A104V, ORF1a:A104V, France) with 100 seqs
5dde128 - Cornelius Roemer, 2023-08-24 00:51:12 +0200 : Designate GS.4.1 (XBB.2.3.11.4.1, S:N185D, ORF3a:G172C, France) with 35 seqs
cffd0e3 - Cornelius Roemer, 2023-08-24 00:56:17 +0200 : Designate GE.1.3 (XBB.2.3.10.1.3, S:T732I) with 100 seqs
b1d0adc - Federico Gueli, 2023-08-24 00:57:09 +0200 : Update lineage_notes.txt
e58c620 - Cornelius Roemer, 2023-08-24 01:03:11 +0200 : Designate JE.1 (GJ.1.2.1.1, S:478R, Singapore/SouthKorea/US) with 7 seqs
238f48b - Cornelius Roemer, 2023-08-24 01:06:46 +0200 : Designate HG.2 (XBB.2.3.8.2, S:T259I, South Korea/USA) with 60 seqs
7e6a661 - Cornelius Roemer, 2023-08-24 01:31:55 +0200 : Designate JF.1 (XBB.1.16.6.1, S:L455F, USA) with 15 seqs
609bb64 - Cornelius Roemer, 2023-08-24 01:35:34 +0200 : Designate JF.2 (XBB.1.16.6.2, S:Q675H, USA/Wales) with 40 seqs
56f6198 - Cornelius Roemer, 2023-08-24 01:40:52 +0200 : Designate GK.1.4 (S:478R, S:98F, Brazil) with 5 seqs
d3ec617 - Cornelius Roemer, 2023-08-24 01:56:34 +0200 : Designate XCH (Recombinant of GK.1.3 and XBB.1.9 (or XBB.1.16), GK.1.3 Spike with ORF9b:I5T from donor, from #2173)
0f61ca7 - Cornelius Roemer, 2023-08-24 02:04:16 +0200 : Designate GK.2.1 (ORF1a:L624I, ORF1a:L3641S, ORF1b:S763C) with 100 seqs
8c1a514 - Cornelius Roemer, 2023-08-24 02:06:25 +0200 : Designate extra HK.3
2d2cdd6 - Cornelius Roemer, 2023-08-24 02:07:13 +0200 : Designate HK.3.1 (EG.5.1.1.3 with S:F157L, China) with 25 seqs
5a316cf - Federico Gueli, 2023-08-24 15:10:20 +0200 : Update lineage_notes.txt
18567dd - Angie Hinrichs, 2023-08-24 08:46:44 -0700 : Merge pull request #2211 from FedeGueli/master-4
ab4243e - Angie Hinrichs, 2023-08-24 09:10:50 -0700 : Merge pull request #2209 from FedeGueli/master-3
e843dc7 - Angie Hinrichs, 2023-08-24 11:05:19 -0700 : Typo fix: new lineage XCH was misspelled XGH in lineages.csv.
60ff1a4 - Cornelius Roemer, 2023-08-24 22:28:26 +0200 : Designate XCJ (Recombinant lineage of GM.2 with a little FP.1 (XBB.1.11.1.1) sandwich inserted in ORF1ab, from lineage-proposals#609)
56e3ad0 - Cornelius Roemer, 2023-08-24 22:31:18 +0200 : Designate GM.3 (XBB.2.3.6.3, ORF1a:R4017K) and GM.3.1 (S:N388K, Japan) with 250/60 seqs
a86f9c6 - Cornelius Roemer, 2023-08-25 00:16:54 +0200 : Designate HC.2 (XBB.1.5.44.2, S:F157L, Canada) with 20 seqs
0b118f7 - Cornelius Roemer, 2023-08-25 00:19:46 +0200 : Designate EG.5.1.7 (XBB.1.9.2.5.1.7, S:K278N) with 19 seqs
0b4d963 - Cornelius Roemer, 2023-08-25 21:02:26 +0200 : Designate JD.1.1 (XBB.1.5.102.1.1, S:A475V, Brazil/USA/Spain) with 30 seqs
93d2313 - Cornelius Roemer, 2023-08-25 21:04:04 +0200 : Designate JD.1.2 (XBB.1.5.102.1.2, S:P1162S, Brazil) with 40 seqs
168e64b - Cornelius Roemer, 2023-08-30 19:30:33 +0200 : Designate XBB.1.5.103 (S:F456L (T22928C), S:180/184del, S:N185D, Argentina) with 50 seqs
1cc7ca9 - Cornelius Roemer, 2023-08-30 22:43:17 +0200 : Designate XCH.1 (S:T573I) with 30 seqs
98c5e92 - Cornelius Roemer, 2023-08-30 23:27:36 +0200 : Designate JG.1 (EG.5.1.3.1, S:T732I, France) with 40 seqs
e28cf09 - Cornelius Roemer, 2023-08-30 23:30:01 +0200 : Designate HK.7 (EG.5.1.1.7, S:N148T, China) 40 seqs
94fbed4 - Cornelius Roemer, 2023-08-30 23:33:03 +0200 : Designate EG.2 (S:K304N, Indonesia/Japan) with 40 seqs
ca37eb2 - Cornelius Roemer, 2023-08-30 23:34:16 +0200 : Designate EG.2.3 (S:I742V, Indonesia/Singapore) with 100 seqs
1d90913 - Cornelius Roemer, 2023-08-30 23:35:52 +0200 : Designate EG.2.4 (S:K356T, ORF1a:G2265D, Singapore) with 15 seqs
b375fca - Cornelius Roemer, 2023-08-30 23:38:03 +0200 : Designate EG.2.5 (S:Q675H, Indonesia) with 40 seqs
c7e7c28 - Cornelius Roemer, 2023-08-31 13:38:03 +0200 : Designate EG.13 (ORF1a:K789N) with 1000 seqs
1118b71 - Cornelius Roemer, 2023-08-31 13:41:33 +0200 : Designate FL.4.8 (S:478R, Indonesia) with 190 seqs
c2c2963 - Cornelius Roemer, 2023-08-31 14:06:02 +0200 : Designate FL.4.9 (S:S254P, ORF3a:D173G) with 200 seqs
1403582 - Cornelius Roemer, 2023-08-31 14:07:30 +0200 : Designate FL.4.10 (S:V1129I, China) with 150 seqs
713fcd7 - Cornelius Roemer, 2023-08-31 14:23:59 +0200 : Designate FY.3.2 (ORF1a:E3764G, China, from #2000) and FY.3.3 (ORF3a:V48F, China)
ebc32aa - Cornelius Roemer, 2023-08-31 14:39:52 +0200 : Designate JH.1 (BQ.1.2.2.1, West Africa, S:K182E, S:P251L, S:486A, S:S494P, S:E554K, from #2068) with 13 seqs
9043731 - Cornelius Roemer, 2023-08-31 14:43:24 +0200 : Designate JH.2 (BQ.1.2.2.2, S:A484T, S:V486A, USA/Canada/Finland, from #2068) with 4 seqs
1fbcb3b - Cornelius Roemer, 2023-08-31 14:58:44 +0200 : Designate FL.2.6 (S:N641K, from #2180) with 70 seqs
4749974 - Cornelius Roemer, 2023-08-31 15:09:15 +0200 : Designate XCK (FL.1.5.1 (5' up to and including S:701) and BQ.1.2.2, from #2215) with 9 seqs
e363047 - Federico Gueli, 2023-08-31 15:21:29 +0200 : Update lineage_notes.txt
a397154 - Cornelius Roemer, 2023-08-31 21:51:06 +0200 : Designate FL.10.2 (S:K356T, S:T523N, Canada/USA) with 30 seqs
2351b67 - Angie Hinrichs, 2023-08-31 16:44:27 -0700 : Merge pull request #2235 from FedeGueli/patch-15
40b2d67 - Cornelius Roemer, 2023-09-01 13:20:22 +0200 : Designate XCL (Recombinant lineage of XBB/GK.2.1, Europe, from #2227) with 40 seqs
8f78e43 - Cornelius Roemer, 2023-09-01 13:35:21 +0200 : Designate FL.30 (S:484K, Greece, from #2206) with 27 seqs
c520d0c - Cornelius Roemer, 2023-09-01 13:58:38 +0200 : Designate GW.1.1 (XBB.1.19.1.1.1, S:F456L, China/Japan/Singapore) with 13 seqs
f75470e - Cornelius Roemer, 2023-09-01 14:00:57 +0200 : Designate GK.2.2 (XBB.1.5.70.2.2, S:E554D) with 19 seqs
5e035b4 - Cornelius Roemer, 2023-09-01 14:06:09 +0200 : Designate HF.1.1 (S:H1101Y, on N:A35T branch, South Korea/USA/Canada) with 70 seqs
154fb44 - Cornelius Roemer, 2023-09-01 14:08:57 +0200 : Designate HF.1.2 (XBB.1.16.13.1.2, S:A688V, on ORF1a:P1158S branch, USA) with 30 seqs
9e08418 - Cornelius Roemer, 2023-09-01 14:10:45 +0200 : Designate XBB.1.5.104 (S:K304Q, USA) with 380 seqs
9f68787 - Cornelius Roemer, 2023-09-01 14:19:15 +0200 : Designate XBB.1.16.23 (S:K304Q, India/USA/Japan/Singapore) with 40 seqs
f9cd663 - Cornelius Roemer, 2023-09-01 14:23:10 +0200 : Designate JH.1 (XBB.1.5.3.1, S:K304Q, USA) with 200 seqs
49aae7b - Cornelius Roemer, 2023-09-01 14:26:33 +0200 : Designate XBB.1.5.105 (S:K304N, USA/Europe) with 70 seqs
9527e15 - Cornelius Roemer, 2023-09-01 14:35:50 +0200 : Designate HK.8 (EG.5.1.1.8, S:L455F, on C11779T branch) with 40 seqs
f271b57 - Cornelius Roemer, 2023-09-01 14:37:25 +0200 : Designate HK.9 (EG.5.1.1.9, S:R190K, on C11779T branch, England) with 60 seqs
36e3fb0 - Cornelius Roemer, 2023-09-01 14:41:13 +0200 : Designate JJ.1 (XBB.1.9.2.5.1.3.1, S:L455F, ORF3a:I47V, China/Japan) with 27 seqs
f655671 - Cornelius Roemer, 2023-09-01 14:44:46 +0200 : Designate HK.10 (EG.5.1.1.10, S:L455F, on C19983T branch, China/England/Denmark) with 19 seqs
1a77042 - Cornelius Roemer, 2023-09-01 23:36:02 +0200 : fix: Deduplicate JH aliasing by making XBB.1.5.3.1 alias to JK
acf9ccc - Cornelius Roemer, 2023-09-01 23:44:04 +0200 : Designate HS.1.1 (XBB.1.5.95.1.1, S:F456L, USA, from #2237) with 50 seqs
5636325 - HynnSpylor, 2023-09-02 05:49:04 +0800 : Update lineage_notes.txt (#2240)
7d172c1 - Federico Gueli, 2023-09-03 00:06:15 +0200 : Update lineage_notes.txt
b440995 - Yat-sing Ng, 2023-09-03 07:22:11 +0800 : Update lineage_notes.txt
2e0850a - Federico Gueli, 2023-09-03 11:54:15 +0200 : Update lineage_notes.txt
5d759d3 - aviczhl2, 2023-09-03 23:01:28 +0800 : Add 4 autoref from main page and 31 from lineage-proposals
59903c3 - Cornelius Roemer, 2023-09-04 14:40:39 +0200 : Designate HK.11 (S:G184S, China/England/SouthKorea, from #2255) with 50 seqs
4fa5b5f - Cornelius Roemer, 2023-09-04 14:52:59 +0200 : Designate JG.2 (EG.5.1.3.2, S:G75V, Europe, from #2249) with 50 seqs
68ae5bf - Cornelius Roemer, 2023-09-04 15:03:29 +0200 : Designate XBB.1.16.24 ( S:K182E, S:V551I, S:E554K, on A25410G branch, India, from #2223) with 13 seqs
4acecbe - Cornelius Roemer, 2023-09-04 16:06:33 +0200 : Withdraw HK.10 for now, as it turns out it's only 5 sequences from 2 Chinese provinces, rather than 15 global
3a66166 - Cornelius Roemer, 2023-09-04 16:14:40 +0200 : Designate JL.1 (FK.1.3.2.1, S:E1111Q, Japan, from #2168) with 90 seqs
9cbe596 - Cornelius Roemer, 2023-09-05 20:19:03 +0200 : Designate BA.2.86.1 (ORF1a:K1973R, C12815T, mainly Europe, from #2236) with 30 seqs
1833d54 - Cornelius Roemer, 2023-09-05 21:45:49 +0200 : Designate XCM (recombinant of XBB.2.3 and DV.7.1 (breakpoint between 22017-22031), Spain/Italy, from sars-cov-2-variants/lineage-proposals#674)
33a8cba - Angie Hinrichs, 2023-09-05 15:03:40 -0700 : Merge pull request #2245 from FedeGueli/patch-15
f5ceb6a - Angie Hinrichs, 2023-09-05 15:04:56 -0700 : Merge pull request #2247 from FedeGueli/patch-16
0007931 - Angie Hinrichs, 2023-09-05 15:11:10 -0700 : Merge branch 'master' into master
462412f - Angie Hinrichs, 2023-09-05 15:13:58 -0700 : Merge pull request #2253 from aviczhl2/master
e2b2cf9 - Angie Hinrichs, 2023-09-05 15:36:08 -0700 : Merge branch 'master' into patch-3
3df30af - Angie Hinrichs, 2023-09-05 15:40:42 -0700 : Merge pull request #2246 from Over-There-Is/patch-3
3b9cf24 - Cornelius Roemer, 2023-09-06 13:29:08 +0200 : Add extra GY.2/GY.2.1 designations
7e6cabd - Cornelius Roemer, 2023-09-06 13:33:57 +0200 : Add extra FY.4, FY.4.1, FY.4.1.1, FY.4.2 designations
358d45c - Cornelius Roemer, 2023-09-06 13:38:08 +0200 : Designate FY.4.1.2 (XBB.1.22.1.4.1.2, ORF1a:S2926F, Kenya) with 100 seqs
ab56ccd - Cornelius Roemer, 2023-09-07 18:40:25 +0200 : Designate EG.6.1.1 (S:484K, S:L242I) with 10 seqs
18177cf - Cornelius Roemer, 2023-09-10 15:42:09 +0200 : Designate GJ.1.2.2 (XBB.2.3.3.1.2.2, S:478R, Europe/US/Australia) with 30 seqs
51f83a7 - Cornelius Roemer, 2023-09-10 15:47:37 +0200 : Designate GJ.1.2.3 (XBB.2.3.3.1.2.3, S:T76I, Japan) with 30 seqs
54dd333 - Cornelius Roemer, 2023-09-10 15:51:25 +0200 : Designate GJ.1.2.4 ( XBB.2.3.3.1.2.4, S:S255F, on ORF1a:H919Y branch, Japan/USA/South Korea) with 30 seqs
9f62ceb - Cornelius Roemer, 2023-09-10 15:56:03 +0200 : Designate GJ.1.2.5 (XBB.2.3.3.1.2.5, S:I834V, Singapore/South Korea/USA) with 50 seqs
67eaa2d - Cornelius Roemer, 2023-09-10 16:16:51 +0200 : Add extra XCM designations
ae63860 - Cornelius Roemer, 2023-09-10 16:31:40 +0200 : Designate FL.4.11 (XBB.1.9.1.4.11, S:D1259Y, N:T334I, China/Japan) with 200 seqs
7476f60 - Cornelius Roemer, 2023-09-10 16:34:57 +0200 : Add additional XCK designations
24cc70f - Cornelius Roemer, 2023-09-10 16:37:00 +0200 : Designate HK.3.2 (S:Q14K, China) with 10 seqs
4be004b - Cornelius Roemer, 2023-09-10 16:38:06 +0200 : Designate HK.3.3 (S:S256L, N:P364L, China/Singapore) with 10 seqs
feaf3b9 - Cornelius Roemer, 2023-09-10 17:19:08 +0200 : Designate EG.14 (Orf1b:K1383R, #2274) with 500
2de0e08 - Cornelius Roemer, 2023-09-10 17:22:02 +0200 : Designate GK.3.2 (S:T572I, USA, #2272) with 30 seqs
5af35f8 - Cornelius Roemer, 2023-09-10 17:30:46 +0200 : Designate CK.1.1.2 (B.1.1.529.5.2.24.1.1.2, S:V1264L, Japan, #2271)
72c46b8 - Cornelius Roemer, 2023-09-10 17:35:11 +0200 : Designate EF.3 (BQ.1.1.13.3, Japan, S:S704T)
3f25b19 - Cornelius Roemer, 2023-09-11 14:06:39 +0200 : Designate GW.5.1 (XBB.1.19.1.5.1, ORF3a:W149C, Pakistan) with 60 seqs
67b4b78 - Cornelius Roemer, 2023-09-11 14:08:13 +0200 : Add extra GW.5 designations
8d67b7a - Cornelius Roemer, 2023-09-11 14:12:36 +0200 : Designate GW.5.1.1 (S:A475V, S:F79S, Pakistan, from #2277) with 7 seqs
0985819 - Cornelius Roemer, 2023-09-11 14:15:32 +0200 : Designate DV.7.1.1 (S:K679R, Spain) with 20 seqs
dd9da93 - Cornelius Roemer, 2023-09-11 14:18:45 +0200 : Designate DV.7.1.2 (ORF1a:A4162V, Spain/England) with 150 seqs
072c887 - Cornelius Roemer, 2023-09-11 16:06:46 +0200 : Designate EG.5.1.8 (S:L455F, China (most of it with C12100G)) with 50 seqs
6c69095 - ciscorucinski, 2023-09-14 00:48:29 +0900 : initial workflow commit
3ce3206 - ciscorucinski, 2023-09-14 01:17:21 +0900 : collect, transform, and commit gh issue-milestone api call
a848b7a - ciscorucinski, 2023-09-14 02:12:09 +0900 : collect, transform, and commit gh issue-milestone api call
5e55afa - Cornelius Roemer, 2023-09-17 15:01:19 +0200 : Designate GK.2.3 (XBB.1.5.70.2.3, S:K356T, England/US-NY) with 11 seqs
6d4f12c - Cornelius Roemer, 2023-09-17 15:39:37 +0200 : Designate GK.4 (S:A475V, ORF1a:T2859I, ORF1ab:T4711I, from #2276), with 15 seqs
bd37247 - Cornelius Roemer, 2023-09-17 16:09:24 +0200 : Designate EG.5.1.9 (S:L176F) with 60 seqs
b084562 - Cornelius Roemer, 2023-09-17 16:13:07 +0200 : Designate JG.3 (S:L455F, S:S704L, Europe) with 60 seqs
e6a71b0 - Cornelius Roemer, 2023-09-17 16:29:28 +0200 : Designate XBB.1.5.106 (S:A623V, ORF1a:V28I, ORF1a:R3542H, Guatemala, from #2270) with 120 seqs
97b03a6 - Cornelius Roemer, 2023-09-21 19:19:24 +0200 : Designate XCN (FR.1.1 and EG.5.1.1 (breakpoint between 22630-22663), China) with 6 seqs
6dca7d9 - Cornelius Roemer, 2023-09-21 19:24:07 +0200 : Designate FL.31 (XBB.1.9.1.31, ORF1b:M657I) with 250 seqs
cc7f7fe - Cornelius Roemer, 2023-09-21 19:26:26 +0200 : Designate FL.31.1 (XBB.1.9.1.31.1, S:478R, S:D80H, S:Q613H, Morocco/Europe/US/Canada) with 30 seqs
20b311a - Cornelius Roemer, 2023-09-21 19:45:57 +0200 : Designate FL.20.2 (XBB.1.9.1.20.2, S:478R) with 40 seqs
73afbe1 - Cornelius Roemer, 2023-09-21 19:48:45 +0200 : Designate FL.32 (XBB.1.9.1.32, S:E554Q, S:V6L) with 60 seqs
462959b - Cornelius Roemer, 2023-09-21 19:51:21 +0200 : Designate FL.32.1 (XBB.1.9.1.32.1, S:F456L, USA) with 25 seqs
39f8f2e - Cornelius Roemer, 2023-09-21 19:56:16 +0200 : Designate FL.10.3 (XBB.1.9.1.10.3, S:G181R) with 30 seqs
feba1fa - Cornelius Roemer, 2023-09-21 20:05:09 +0200 : Designate FL.33 (ORF1b:A1377V) with 300 sequences
ab210f7 - Cornelius Roemer, 2023-09-21 20:09:27 +0200 : Designate FL.33.1 (XBB.1.9.1.33.1, S:478R, Georgia) with 100 seqs
f071d9e - Cornelius Roemer, 2023-09-21 20:14:43 +0200 : Designate FL.34 (S:D1118Y, South Korea) with 150 seqs
3ddfc81 - Cornelius Roemer, 2023-09-21 20:20:24 +0200 : Designate FL.35 (ORF8:S103L, South Africa) with 200 seqs
d829407 - Cornelius Roemer, 2023-09-22 14:13:58 +0200 : Designate JM.1 (XBB.1.16.15, S:Q52H, England/Wales) with 50 seqs
45f3639 - Cornelius Roemer, 2023-09-22 14:16:07 +0200 : Designate JM.2 (XBB.1.16.15.2, S:R78S, Europe/North America) with 40 seqs
c18deef - Cornelius Roemer, 2023-09-22 14:29:23 +0200 : Designate GS.5 (XBB.2.3.11.5, M:A104V, S:Q218H) with 50 seqs
53daf07 - Cornelius Roemer, 2023-09-24 14:57:51 +0200 : Designate GK.2.1.1 (XBB.1.5.70.2.1.1, S:P1162S, main donor of XCL) with 20 seqs
3d3bfbb - Cornelius Roemer, 2023-09-24 15:32:03 +0200 : Designate EG.4.5 (S:478R, Indonesia/France) and CH.1.1.31 (South Africa)
51ccae0 - Cornelius Roemer, 2023-09-24 15:35:30 +0200 : Designate JP.1 (CH.1.1.31.1, S:R403K, S:V36I, S:G181E, South Africa) with 6 seqs
3461b2a - Cornelius Roemer, 2023-09-24 15:40:47 +0200 : Designate CH.1.1.32 ( S:L858I, N:P80Q, ORF1a:E974A) with 260 seqs
a01b6bd - Cornelius Roemer, 2023-09-24 16:35:28 +0200 : fix: free up JN alias as it was added by accident
6d41bdc - Cornelius Roemer, 2023-09-24 17:47:44 +0200 : Add alias-key-json CI test
06c11c9 - Cornelius Roemer, 2023-09-24 17:47:57 +0200 : Add precommit config
a452e5e - Cornelius Roemer, 2023-09-24 18:09:06 +0200 : Add fast duplicate detection test to precommit
4127017 - Cornelius Roemer, 2023-09-24 18:17:35 +0200 : Basic check on lineage notes (2 column tsv with unique keys)
52d7b9f - Memorable, 2023-09-25 00:30:22 +0800 : Update lineage_notes.txt (#2279)
7146f6e - Cornelius Roemer, 2023-09-24 18:37:41 +0200 : Update workflow actions and format yamls
39c1def - Cornelius Roemer, 2023-09-24 18:49:31 +0200 : Add actionlint to precommit, and set python-version in workflow
67f1f2a - Cornelius Roemer, 2023-09-24 18:52:07 +0200 : Use non-local actionlint
0c2b476 - Cornelius Roemer, 2023-09-24 18:54:38 +0200 : Run workflows only when relevant files affected
1c2e370 - Cornelius Roemer, 2023-09-26 14:54:51 +0200 : Designate JD.1.1.1 (XBB.1.5.102.1.1.1, S:Y248H) with 6 seqs
5f56779 - Cornelius Roemer, 2023-09-26 14:56:07 +0200 : Designate JD.1.1.2 (XBB.1.5.102.1.1.1, S:E583D, Ireland/UK) with 20 seqs
7985b2c - Cornelius Roemer, 2023-09-26 15:02:48 +0200 : Designate XCP (EG.5.1 and JD.1.1 (breakpoint between 14190-14633), France/Denmark/England, from sars-cov-2-variants/lineage-proposals#772) with 6 seqs
9858959 - Cornelius Roemer, 2023-09-26 15:05:26 +0200 : Designate EG.5.1.10 (ORF1a:I3758V, Portugal/Spain) with 70 seqs
69c69bf - Cornelius Roemer, 2023-09-26 15:09:26 +0200 : Designate GA.4.1.1 (XBB.1.17.1.4.1.1, S:Q675H) with 4 seqs
595bcec - Cornelius Roemer, 2023-09-26 15:31:02 +0200 : Designate FR.1.5 (B.1.1.529.2.75.5.1.2.3.1.5, ORF1a:V116M, ORF1a:S2242F, ORF1a:M4071T, Japan) with 20 seqs
e42a0c9 - Cornelius Roemer, 2023-09-26 15:38:35 +0200 : Designate EP.1.1 (BM.1.1.4.1.1, ORF1a:P4120S, ORF8:Q18H, Bhutan) with 30 seqs
28db02d - Cornelius Roemer, 2023-09-26 15:40:13 +0200 : Designate EP.1.1.1 (S:T22N, S:T76I, S:T1006A, Bhutan/Thailand/Singapore) with 10 seqs
909106a - Cornelius Roemer, 2023-09-26 15:58:17 +0200 : Designate FL.36 (XBB.1.9.1.36, S:76I, S:190S, S:356T, S:572I, S:899S, S:1070T, England/US/Denmark) with 12 seqs
6b00244 - Cornelius Roemer, 2023-09-26 16:00:47 +0200 : Designate HC.4 ( XBB.1.5.44.4, S:D1084H, ORF1a:A1352V, UK/Canada) with 10 s eqs
62ce3de - Cornelius Roemer, 2023-09-27 16:23:22 +0200 : Designate FL.15.1 (S:L455F, ORF1a:T2007I, on ORF1a:S2185N branch, from #2293) with 30 seqs
c90eba8 - Cornelius Roemer, 2023-09-27 16:26:16 +0200 : Designate FL.15.1.1 ( S:A475V, Canada/Romania/Belgium) with 8 seqs
81a254a - Cornelius Roemer, 2023-09-27 16:28:25 +0200 : Designate FL.15.2 (XBB.1.9.1.15.1, S:Q14H, China) with 50 seqs
f2de805 - Cornelius Roemer, 2023-09-27 16:29:55 +0200 : Designate FL.15.3 (S:G181V, North America) with 60 seqs
c9b20c3 - Xu Zou, 2023-09-29 09:53:21 +0800 : Add 5 autorefs from main repo and 18 from lineage-proposal repo (#2299)
9a54670 - Cornelius Roemer, 2023-09-29 16:17:58 +0200 : Designate JN.1 (BA.2.86.1.1, S:L455S, ORF1a:R3821K, ORF7b:F19L, Europe) with 5 seqs
66ae9c7 - Yat-sing Ng, 2023-09-30 16:54:27 +0800 : Update lineage_notes.txt
2a77486 - Cornelius Roemer, 2023-09-30 20:27:37 +0200 : Fix: alias value must start with A, B or X
1b91ead - Angie Hinrichs, 2023-10-03 10:22:40 -0700 : Merge pull request #2302 from Over-There-Is/patch-4
3f52f40 - Angie Hinrichs, 2023-10-03 11:06:58 -0700 : Merge pull request #2281 from ciscorucinski/feature/workflow/issue-milestone-collector
ec1bf5f - Cornelius Roemer, 2023-10-04 16:40:23 +0200 : Designate JD.1.1.3 (S:T470N, ORF1a:V1584M, France/Denmark) with 8 seqs
5a1a8c3 - Cornelius Roemer, 2023-10-04 16:44:13 +0200 : Add extra designations for JD.1.1.1/2 and XCP
4068b01 - Cornelius Roemer, 2023-10-04 16:50:20 +0200 : Designate JD.2 (XBB.1.5.102.2, ORF1b:H2388Y, G4255A, Brazil) with 1200 seqs
0b7f46a - Cornelius Roemer, 2023-10-04 17:14:52 +0200 : Designate GJ.1.2.6 (S:478R, on ORF1b:S997P branch) with 25 seqs
d0c77a4 - Cornelius Roemer, 2023-10-04 17:21:18 +0200 : Designate GJ.1.2.7 (S:478R, T6511C, on ORF1a:H919Y branch) with 30 seqs
0144b00 - Cornelius Roemer, 2023-10-04 17:27:29 +0200 : Designate JE.1.1 (S:Q52R) with 30 seqs
d945abd - Cornelius Roemer, 2023-10-04 17:31:40 +0200 : Designate GJ.1.2.8 (XBB.2.3.3.1.2.8, S:T747I, USA) with 50 seqs
897f423 - Cornelius Roemer, 2023-10-04 17:37:42 +0200 : Designate GJ.5 (XBB.2.3.3.5, S:478R, A11794G, C13138T) with 270 seqs
7122242 - Cornelius Roemer, 2023-10-04 17:39:26 +0200 : Designate GJ.5.1 (S:S255F, ORF1a:A540V, ORF1a:A3963V) with 100 seqs

pango-designation - pango designation v1.22

Published by AngieHinrichs about 1 year ago

Release notes

ed6f4b2 - Cornelius Roemer, 2023-06-26 12:30:46 +0200 : Designate DV.7.1 (S:L455F, S:F456L, Spain/Austria, lineage-proposals#135) with 14 seqs
ca84b09 - Cornelius Roemer, 2023-06-26 12:35:59 +0200 : Designate GW.1 (XBB.1.19.1.1, ORF1a:D264N, N:M322V, China) with 140 seqs
23e89d6 - Cornelius Roemer, 2023-06-26 12:37:30 +0200 : Designate GW.2 (S:D936G, USA) with 100 seqs
83a1f8a - Cornelius Roemer, 2023-06-26 19:51:32 +0200 : Designate GY.1 (XBB.1.16.2.1, S:L84I, ORF1a:A4068S, China, from #2066) with 80 seqs
995d8c2 - Cornelius Roemer, 2023-06-26 20:12:17 +0200 : Designate GY.2 (XBB.1.16.2.2, S:T883I) with 25 seqs
664200c - Cornelius Roemer, 2023-06-26 20:15:56 +0200 : Designate BN.1.2.7 (N:N8S, C16332T, Taiwan, from #1923) with 80 seqs
939990f - Cornelius Roemer, 2023-06-26 20:31:09 +0200 : Designate GJ.1.2 (XBB.2.3.3.1.2, ORF1b:V1110I, from #2059) with 200 seqs
7fed7cc - Cornelius Roemer, 2023-06-28 13:33:09 +0200 : Designate FL.13.2 (S:K356T, China, from #2073) with 30 seqs
20e6497 - Cornelius Roemer, 2023-06-28 13:44:19 +0200 : Designate FL.18 (ORF1a:T2007I) with 800 seqs
c07ae4b - Cornelius Roemer, 2023-06-28 15:55:05 +0200 : Designate FL.18.1 (N:T166I, A27507C, from #2019) with 200 seqs
23cfb26 - Cornelius Roemer, 2023-06-28 16:00:13 +0200 : Designate FL.18.1.1 (S:Y200C, S:478R, Australia/Indonesia) with 20 seqs
8e3e5bb - Cornelius Roemer, 2023-06-28 18:44:32 +0200 : Designate XBB.1.5.88 (C2299T, South Africa) with 200 seqs
d535b36 - Cornelius Roemer, 2023-06-28 18:51:47 +0200 : Designate GZ.1 (XBB.2.3.4.1, S:F186L, India-GJ) with 80 seqs
b45620c - Cornelius Roemer, 2023-06-28 19:30:14 +0200 : Designate HA.1 (XBB.1.5.86.1, S:F456L (22930A), Brazil/Canada) and HA.2 (S:P521S, Brazil) with 50 seqs each
d973087 - Cornelius Roemer, 2023-06-28 19:37:49 +0200 : Designate XBB.1.5.89 (S:478R, S:554A, Canada/Italy/France) with 40 seqs
3e1a8b0 - Cornelius Roemer, 2023-06-28 21:22:02 +0200 : Add extra XBB.1.16.6 designations
aaee4fd - Cornelius Roemer, 2023-06-28 21:23:34 +0200 : Add extra XBB.1.16.9 designations
3c00ba8 - Cornelius Roemer, 2023-06-28 21:24:49 +0200 : Add extra FL.1.5.1 designations
5bb0fae - Cornelius Roemer, 2023-06-28 21:33:51 +0200 : Designate HB.1 (XBB.1.34.2.1, S:F456L (22928C), US/China/Canada, from sars-cov-2-variants/lineage-proposals#217) with 10 seqs
7f13742 - Cornelius Roemer, 2023-06-28 21:41:40 +0200 : Designate EG.2.1 (S:F456L (T22930A), S:V327I, Indonesia/US/Australia) with 5 seqs
c65ee84 - Cornelius Roemer, 2023-06-28 21:48:49 +0200 : Designate HC.1 (XBB.1.5.44.1, S:P631S, USA) with 30 seqs
971191a - Cornelius Roemer, 2023-06-28 21:53:40 +0200 : Designate FL.19 (XBB.1.9.1.18, T2377C) with 500 seqs
80a1671 - Cornelius Roemer, 2023-06-28 22:02:14 +0200 : Designate FU.3 (XBB.1.16.1.3, C11665T, India) with 190 seqs
4dd681b - Cornelius Roemer, 2023-06-28 23:08:12 +0200 : Designate BQ.1.1.79 (S:Q613H, C1594T, C16362T, T24079C, Greece) with 300 seqs
21b34b0 - Cornelius Roemer, 2023-06-29 23:29:20 +0200 : Designate FL.20 (S:F456L (22928C), S:Q52H, Spain, from #2072) with 20 seqs
1a8596e - Cornelius Roemer, 2023-06-29 23:50:07 +0200 : Designate XBB.1.31.1 (S:E553K, Indonesia) with 19 seqs
0dfab29 - Cornelius Roemer, 2023-06-29 23:53:31 +0200 : Designate FL.1.7 (S:478R, S:C1235F, Indonesia) with 30 seqs
33d7bbe - Cornelius Roemer, 2023-06-29 23:58:08 +0200 : Designate FL.1.1.1 (S:A688S, Australia/Mauritius) with 30 seqs
40d135d - Cornelius Roemer, 2023-06-30 00:08:51 +0200 : Designate FL.4.4 (ORF1a:T1542I, T24544C, S:478T (reversion), Indonesia) with 70 seqs
fd41be6 - Cornelius Roemer, 2023-06-30 00:11:54 +0200 : Designate FL.4.5 (ORF8:S67F, ORF1a:D1228G, C23635T) with 600 seqs
02d6085 - Cornelius Roemer, 2023-06-30 00:13:33 +0200 : Designate FL.4.6 (T5098C, C13965T, Australia/China) with 400 seqs
ec23e4a - Cornelius Roemer, 2023-06-30 00:18:40 +0200 : Designate FL.4.1.1 (S:K478R, ORF1a:I2286T, Indonesia/Australia) with 20 seqs
80dc246 - Cornelius Roemer, 2023-06-30 00:20:40 +0200 : Designate FL.4.7 (S:L452R, Singapore) with 20 seqs
6e6ced5 - Cornelius Roemer, 2023-06-30 11:56:49 +0200 : Designate GY.3 (S:M177I, Thailand) with 30 seqs
a76d1de - Cornelius Roemer, 2023-06-30 11:58:02 +0200 : Designate GY.2.1 (S:S255F, South Korea) with 20 seqs
1a630a8 - Cornelius Roemer, 2023-06-30 12:00:44 +0200 : Designate XBB.1.16.12 (S:Q52H, South Korea) with 60 seqs
c411680 - Cornelius Roemer, 2023-06-30 12:02:45 +0200 : Designate XBB.1.16.13 (ORF1a:G519S, ORF1a:G1101D, India) with 300 seqs
51bc6d4 - Cornelius Roemer, 2023-06-30 12:06:48 +0200 : Designate FL.21 (XBB.1.9.1.21, A10564T, South Korea/China) with 300 seqs
00647cb - Cornelius Roemer, 2023-06-30 12:08:34 +0200 : Designate FL.5.1 (S:M177T) with 100 seqs
2504a6d - Cornelius Roemer, 2023-06-30 12:10:57 +0200 : Designate EG.1.4.1 (S:P217L, South Korea) with 80 seqs
317f95f - Cornelius Roemer, 2023-06-30 12:13:20 +0200 : Designate GD.2 (S:L212S, Philippines) with 100 seqs
1809d78 - Cornelius Roemer, 2023-06-30 12:14:42 +0200 : Designate GD.3 (S:F59L, Russia) with 80 seqs
019df7f - Cornelius Roemer, 2023-06-30 12:16:39 +0200 : Designate EG.1.5 (S:S98F, Europe) with 90 seqs
8492ad8 - Cornelius Roemer, 2023-06-30 12:18:32 +0200 : Designate EG.8 (ORF1a:S2303F, Europe) with 130 seqs
73d070d - Cornelius Roemer, 2023-06-30 12:25:53 +0200 : Designate FL.22 (ORF1b:I1416V, T24184C) with 300 seqs
ea90ffe - Cornelius Roemer, 2023-06-30 12:27:24 +0200 : Designate FL.23 (ORF1b:V1132I, Philippines) with 200 seqs
3645109 - Cornelius Roemer, 2023-06-30 12:31:12 +0200 : Designate FY.6 (T2935C, ORF1a:A591V, France) with 180 seqs
01cf28d - Cornelius Roemer, 2023-07-09 15:56:14 +0200 : Designate CM.8.1.5 (S:K150E, S:Y248H, N:A155V, Philippines) with 20 seqs
662800b - Cornelius Roemer, 2023-07-09 16:14:16 +0200 : Designate CK.1.1.1. (S:E654K, G6742T, C8782T, Japan) and CK.1.3 (Mexico, S:F157L, S:G181V)
daeb496 - Cornelius Roemer, 2023-07-09 16:16:58 +0200 : Designate CK.1.4 (C25614T, C10228T, C25824T, C27741T) with 1k seqs
b5aedd0 - Cornelius Roemer, 2023-07-09 16:19:08 +0200 : Designate CK.1.5 (C9118T, C15951T, ORF1a:M3733V, on C25614T branch) with 500 seqs
c65d4df - Cornelius Roemer, 2023-07-09 16:27:05 +0200 : Designate FR.1.4 (A3715G, C15960T, on shared T2372C, C7318T, ORF1a:L293F branch with FR.1.1, China) with 100 seqs
9f92dc5 - Cornelius Roemer, 2023-07-09 16:30:26 +0200 : Designate GQ.1.1 (S:G213E, New Zealand) with 20 seqs
049c18c - Cornelius Roemer, 2023-07-09 16:34:28 +0200 : Designate FK.1.3.1 (S:E583D, Australia) and FK.1.3.2 (C9391T, T13596C, Australia/Japan)
ba63b28 - Cornelius Roemer, 2023-07-09 16:37:43 +0200 : Designate FK.1.5 (G5155A, C12439T, Australia/New Zealand) with 200 seqs
5cd7ffd - Cornelius Roemer, 2023-07-09 16:40:42 +0200 : Designate CJ.1.3.1 (S:R214S, ORF1a:G3578S, South Korea/Japan) with 40 seqs
f0582e1 - Cornelius Roemer, 2023-07-09 16:42:24 +0200 : Designate CJ.1.3.2 (S:D936H, South Korea) with 200 seqs
9e3c876 - Cornelius Roemer, 2023-07-09 19:07:57 +0200 : Designate EU.1.1.3 (S:F157L, Europe) with 60 seqs
c8cadb0 - Cornelius Roemer, 2023-07-09 19:10:44 +0200 : Designate FL.24 (S:Q613H, S:A688V) with 80 seqs
a2a5587 - Cornelius Roemer, 2023-07-09 19:14:23 +0200 : Add extra EG.7 designations
5648ff2 - Cornelius Roemer, 2023-07-10 11:43:01 +0200 : Designate XBB.1.16.14 (S:L452Q, after A11782G, India/France/Canada) with 25 seqs
6a905e3 - Cornelius Roemer, 2023-07-10 12:02:10 +0200 : Designate XBB.1.5.90 (S:P621S, ORF1ab:S6713L, Belgium/France) with 200 seqs
bf7f18a - Cornelius Roemer, 2023-07-10 12:04:27 +0200 : Designate XBB.1.5.91 (S:P621S, USA) with 400 seqs
cbbfabf - Cornelius Roemer, 2023-07-10 12:09:21 +0200 : Designate FL.25 (S:E554K, USA/England) with 120 seqs
83a6944 - Cornelius Roemer, 2023-07-10 12:11:49 +0200 : Designate FL.2.4 (ORF8:S67F, China) with 300 seqs
8a47ca9 - Cornelius Roemer, 2023-07-10 12:15:10 +0200 : Designate XCF.1 (S:F157L, USA) with 10 seqs
9a507d8 - Cornelius Roemer, 2023-07-10 12:16:20 +0200 : Designate XCF.2 (S:S929I, Canada) with 15 seqs
3115358 - Cornelius Roemer, 2023-07-10 12:20:14 +0200 : Designate FL.26 (C22264T) with 300 seqs
c2eaf5e - Cornelius Roemer, 2023-07-10 12:21:11 +0200 : Designate FL.26.1 (S:493L, Sweden) with 40 seqs
5780e06 - Cornelius Roemer, 2023-07-10 12:44:21 +0200 : Designate GK.2 (XBB.1.5.70.2, S:V511I) with 20 seqs
7c2e3c0 - Cornelius Roemer, 2023-07-11 11:16:57 +0200 : Add relevant issues to lineage notes
bb5a2d6 - Cornelius Roemer, 2023-07-11 17:48:45 +0200 : Designate FU.4 (S:Y453F, T29410C) with 12 seqs
4f8b6f0 - Cornelius Roemer, 2023-07-11 17:55:53 +0200 : Designate XBB.1.5.92 (ORF1a:T1168I, Ecuador) with 150 seqs
08e3e8b - Cornelius Roemer, 2023-07-11 18:02:21 +0200 : Designate XBB.1.5.93 (C337T, C19186T, USA, 77 seqs) and HD.1 (S:T346I, USA/Dominican Republic, 10 seqs)
115963b - Cornelius Roemer, 2023-07-13 01:27:06 +0200 : Designate XBB.1.16.15 (S:P521S, T10756C, T14067C, on C27513T branch) with 30 seqs
d951ada - Cornelius Roemer, 2023-07-13 23:41:53 +0200 : Designate GK.1.1 (XBB.1.5.70.1.1, S:T573I, Brazil) with 6 seqs
7afb37c - Cornelius Roemer, 2023-07-13 23:42:53 +0200 : Designate GK.1.2 (XBB.1.5.70.1.2, S:N185D, Brazil) with 7 seqs
fe717fc - Cornelius Roemer, 2023-07-13 23:44:22 +0200 : Designate GK.1.3 (ORF1a:E633A, ORF1b:D1130G, USA/Canada)
5420763 - Cornelius Roemer, 2023-07-13 23:45:59 +0200 : Designate additional GK.1 sequences
80108f5 - Cornelius Roemer, 2023-07-14 00:05:03 +0200 : Designate HE.1 (FE.1.1.1, S:V622I, ORF8:A55V, USA/Puerto Rico) with 180 seqs
c2d2412 - Cornelius Roemer, 2023-07-14 00:08:29 +0200 : Designate FE.1.1.3 (XBB.1.18.1.1.1.3, A24775G, China) with 75 seqs
aa955b5 - Cornelius Roemer, 2023-07-14 00:09:45 +0200 : Designate FE.1.1.4 (XBB.1.18.1.1.1.4, A4336G, T24073C, Brazil) with 50 seqs
c36d5d6 - Cornelius Roemer, 2023-07-14 00:33:35 +0200 : Designate HF.1 (XBB.1.16.13.1, S:K304N, South Korea/Japan) with 140 seqs
df3436b - Cornelius Roemer, 2023-07-14 00:41:06 +0200 : Designate XBB.1.16.16 (S:Q613H, S:S412N, India-GJ/USA/Pakistan) with 60 seqs
1871d61 - Cornelius Roemer, 2023-07-14 10:55:17 +0200 : Designate HG.1 (XBB.2.3.8.1, S:S98F, South Korea) with 35 seqs
db06f28 - Cornelius Roemer, 2023-07-14 10:59:54 +0200 : Designate XBB.2.3.13 (ORF1a:T1822I, Spain) with 150 seqs
91f8f7b - Cornelius Roemer, 2023-07-14 11:01:16 +0200 : Designate XBB.2.3.14 (ORF1a:Q998H) with 120 seqs
5373474 - Cornelius Roemer, 2023-07-14 11:12:33 +0200 : Designate XBB.1.49 (S:346S, S:486P, on C16648A, A27965G, pre ORF8:8* branch with XBB.1.33, Somalia) with 9 seqs
b9e8cf4 - Cornelius Roemer, 2023-07-14 11:17:19 +0200 : Designate GJ.3 (XBB.2.3.3.3, ORF1a:P971S, ORF1b:V2371L) with 200 seqs
cc0c6b0 - Cornelius Roemer, 2023-07-14 11:35:52 +0200 : Designate XBB.1.5.94 (S:Q613H, T25461C, France) with 350 seqs
c17085b - Cornelius Roemer, 2023-07-14 11:41:47 +0200 : Designate EG.1.6 (XBB.1.9.2.1.6, G26235T) with 1.5k seqs
b695ac6 - Cornelius Roemer, 2023-07-14 11:45:07 +0200 : Designate HH.1 (XBB.2.3.2.1, ORF1a:T2977I, T20697C) with 1.2k seqs
a324a89 - Cornelius Roemer, 2023-07-14 11:45:56 +0200 : Designate HH.1.1 (XBB.2.3.2.1.1, S:G181A) with 100 seqs
c95c3fe - Cornelius Roemer, 2023-07-14 11:47:10 +0200 : Designate HH.2 (XBB.2.3.2.2, ORF1a:D48Y) with 270 seqs
bc405aa - Cornelius Roemer, 2023-07-14 11:49:48 +0200 : Designate CM.7.1.1 (S:R403K, Europe, from sars-cov-2-variants/lineage-proposals#37) with 15 seqs
6031f74 - Cornelius Roemer, 2023-07-17 11:19:22 +0200 : Designate XBB.1.42.1 (S:478R) with 30 seqs
60c4dd9 - Cornelius Roemer, 2023-07-17 11:23:08 +0200 : Designate XBB.1.12.1 (S:Q613H, S:E1202Q, Argentina/Chile/Spain) with 15 seqs
e1fa315 - Yat-sing Ng, 2023-07-17 17:24:27 +0800 : Update lineage_notes.txt (#2097)
b38c35a - Xu Zou, 2023-07-17 21:35:55 +0800 : Add some issue refs (#2098)
eb76e85 - Memorable, 2023-07-17 21:36:21 +0800 : Update lineage_notes.txt (#2100)
568a2df - Federico Gueli, 2023-07-17 15:36:38 +0200 : Update lineage_notes.txt (#2102)
c2f0324 - Federico Gueli, 2023-07-17 15:36:55 +0200 : Update lineage_notes.txt (#2103)
feb1127 - Federico Gueli, 2023-07-17 15:38:23 +0200 : Update lineage_notes.txt (#2104)
45a4f84 - Memorable, 2023-07-18 16:53:04 +0800 : Update lineage_notes.txt (#2106)
7507cc9 - Memorable, 2023-07-18 16:56:41 +0800 : Update lineage_notes.txt (#2108)
856bf3c - Xu Zou, 2023-07-18 23:39:00 +0800 : add some issue refs (#2111)
8fdcc3a - aviczhl2, 2023-07-19 10:13:46 +0800 : new file: automated-issue-ref.ipynb
5c5cf34 - aviczhl2, 2023-07-19 12:32:03 +0800 : modified: automated-issue-ref.ipynb new file: milestone.txt
b2d040f - aviczhl2, 2023-07-19 15:30:20 +0800 : modified: automated-issue-ref.ipynb new file: autoref/milestone.txt deleted: milestone.txt
ff8238e - aviczhl2, 2023-07-19 17:21:26 +0800 : modified: automated-issue-ref.ipynb modified: autoref/milestone.txt new file: autoref/missing_refs.txt
7a62b9f - Cornelius Roemer, 2023-07-19 13:14:14 +0200 : Designate GY.4 (XBB.1.16.2.4, S:N450K, C29095T, Laos) with 9 seqs
0fc819e - Cornelius Roemer, 2023-07-19 13:15:47 +0200 : Designate GY.5 (XBB.1.16.2.5, G9190C) with 500 seqs
171a8d1 - Cornelius Roemer, 2023-07-19 13:16:59 +0200 : Designate GY.6 (XBB.1.16.2.6, ORF1a:V1765I) with 270 seqs
38e6da4 - Cornelius Roemer, 2023-07-19 13:20:06 +0200 : Designate EG.4.1 (XBB.1.9.2.4.1, S:I870V, N:A119S) with 70 seqs
e5b34bb - Cornelius Roemer, 2023-07-19 13:21:18 +0200 : Designate EG.4.2 (S:A623V, T14652C, China) with 50 seqs
7966467 - Cornelius Roemer, 2023-07-19 13:22:21 +0200 : Designate EG.4.3 (XBB.1.9.2.4.3, S:Q613H) with 60 seqs
6669316 - Cornelius Roemer, 2023-07-19 13:24:56 +0200 : Designate XBB.1.31.2 (ORF1a:A1049V, Indonesia) with 100 seqs
8daea5c - Cornelius Roemer, 2023-07-19 13:27:16 +0200 : Designate GY.7 (XBB.1.16.2.7, ORF1a:G3617C, G5515T, Thailand/Laos) with 80 seqs
9574026 - Cornelius Roemer, 2023-07-19 13:29:40 +0200 : Designate XBB.1.5.95 (ORF1:A1851V) with 1000 seqs
2d9f73d - Cornelius Roemer, 2023-07-19 13:31:51 +0200 : Designate HJ.1 (XBB.1.5.1.1, S:E324K, C4543T, USA) with 150 seqs
75a31b2 - Cornelius Roemer, 2023-07-19 13:33:12 +0200 : Designate XBB.1.5.96 (C28603T) with 650 seqs
7c06b9e - Cornelius Roemer, 2023-07-19 13:34:44 +0200 : Designate FU.3.1 (XBB.1.16.1.3.1, S:G184S) with 20 seqs
9c16a93 - Cornelius Roemer, 2023-07-19 13:36:48 +0200 : Designate GW.3 (XBB.1.19.1.2, ORF1a:S100N, ORF1a:N3537S) with 80 seqs
00437de - Cornelius Roemer, 2023-07-19 13:37:40 +0200 : Designate GW.4 (ORF1a:M3280I) with 70 seqs
aa879db - Cornelius Roemer, 2023-07-19 13:39:50 +0200 : Designate FL.23.1 (XBB.1.9.1.23.1, ORF1a:A2584V, C8016, C8311T) with 130 seqs
8d8123b - Cornelius Roemer, 2023-07-19 13:42:15 +0200 : Designate FL.27 (XBB.1.9.1.27, ORF1a:V3747I) with 800 seqs
5a81757 - Cornelius Roemer, 2023-07-19 13:44:17 +0200 : Designate FD.4.1 (XBB.1.5.15.4.1, ORF1a:T4355I, ORF1b:I2634F) with 400 seqs
89f17cd - Xu Zou, 2023-07-19 23:14:23 +0800 : Merge branch 'cov-lineages:master' into master
2acb724 - aviczhl2, 2023-07-19 23:59:53 +0800 : modified: automated-issue-ref.ipynb
8a61f0d - aviczhl2, 2023-07-20 10:38:33 +0800 : modified: lineage_notes.txt
32b172d - Angie Hinrichs, 2023-07-19 20:02:24 -0700 : Merge pull request #2113 from aviczhl2/master
05f1b08 - Xu Zou, 2023-07-20 16:19:32 +0800 : Add some issue refs without milestones
06e73b0 - Angie Hinrichs, 2023-07-20 09:33:40 -0700 : Merge pull request #2114 from aviczhl2/master
9fb2234 - aviczhl2, 2023-07-21 12:52:14 +0800 : modified: automated-issue-ref.ipynb modified: autoref/milestone.txt new file: autoref/milestone_sub.txt modified: autoref/missing_refs.txt
6735f4f - aviczhl2, 2023-07-21 12:53:00 +0800 : modified: lineage_notes.txt
21d52ef - HynnSpylor, 2023-07-21 15:57:17 +0800 : Update lineage_notes.txt
2929a05 - Angie Hinrichs, 2023-07-21 10:00:13 -0700 : Merge pull request #2118 from aviczhl2/master
076607c - Angie Hinrichs, 2023-07-21 10:53:36 -0700 : Merge pull request #2119 from HynnSpylor/patch-1
ad56c13 - Yat-sing Ng, 2023-07-22 03:52:33 +0800 : Update lineage_notes.txt
ac3dade - Angie Hinrichs, 2023-07-21 13:13:11 -0700 : Merge pull request #2120 from Over-There-Is/patch-2
a20992b - Cornelius Roemer, 2023-07-23 15:33:22 +0200 : Designate GN.2 (XBB.1.5.73.2, ORF3a:A99G, Peru) with 25 seqs
3cc23f5 - aviczhl2, 2023-07-23 21:33:45 +0800 : modified: automated-issue-ref.ipynb modified: autoref/milestone_sub.txt modified: autoref/missing_refs.txt
5772805 - aviczhl2, 2023-07-23 21:34:15 +0800 : modified lineage_notes.txt and add 4 refs.
9deedad - Xu Zou, 2023-07-23 21:35:17 +0800 : Merge branch 'cov-lineages:master' into master
f7f0271 - Cornelius Roemer, 2023-07-23 15:36:06 +0200 : Designate GN.1.1 (XBB.1.5.73.1.1, ORF1b:A1643V, Peru) with 25 seqs
cacc5b0 - Cornelius Roemer, 2023-07-23 15:38:28 +0200 : Designate GN.3 (XBB.1.5.73.3, C27143T, Peru) with 150 seqs
f2131fd - Cornelius Roemer, 2023-07-23 15:39:11 +0200 : Designate GN.4 (XBB.1.5.73.4, ORF1a:Q3966L, Peru) with 80 seqs
59ad85e - Cornelius Roemer, 2023-07-23 15:40:33 +0200 : Designate GN.5 (XBB.1.5.73.5, ORF1a:L1110I, ORF1a:S4135F, Peru) with 40 seqs
240d38f - Cornelius Roemer, 2023-07-23 15:42:55 +0200 : Designate EG.5.1.2 (XBB.1.9.2.5.1.2, Japan, ORF1b:V1644I) with 60 seqs
90d48d5 - Cornelius Roemer, 2023-07-23 15:44:11 +0200 : Designate EG.5.1.3 (XBB.1.9.2.5.1.3, ORF1a:R542C, C22570T) with 120 seqs
aa93992 - Cornelius Roemer, 2023-07-23 15:45:34 +0200 : Designate EG.5.1.4 (XBB.1.9.2.5.1.4, ORF1b:K2557R) with 120 seqs
e3394b0 - Cornelius Roemer, 2023-07-23 15:47:09 +0200 : Designate EG.5.1.5 (XBB.1.9.2.5.1.5, ORF1a:L3293I, ORF1b:T1274I, ORF1b:L2349V, Portugal) with 40 seqs
55ac27d - Cornelius Roemer, 2023-07-23 15:49:59 +0200 : Designate HK.1 (EG.5.1.1.1, S:G257V, China) with 30 seqs
00204cc - Cornelius Roemer, 2023-07-23 15:52:02 +0200 : Designate HK.2 (EG.5.1.1.2, S:Q14H, China) with 13 seqs
39a35ba - Cornelius Roemer, 2023-07-23 15:54:03 +0200 : Designate HK.3 (EG.5.1.1.3, S:L455F, China) with 7 seqs
e11ebdd - Cornelius Roemer, 2023-07-23 15:56:09 +0200 : Designate HK.4 (S:T883I, China), HK.5 (S:Q677H, China) with 10 seqs each
a65b322 - Cornelius Roemer, 2023-07-23 15:57:47 +0200 : Designate EG.5.1.6 (S:F157L, ORF1a:S1857L, USA) with 25 seqs
f5fda99 - Cornelius Roemer, 2023-07-23 16:09:39 +0200 : Designate FT.2 (XBB.1.5.39.2, S:K1045N, Canada-QC/USA-NY) with 40 seqs
fb827c8 - Cornelius Roemer, 2023-07-23 16:11:33 +0200 : Designate FT.3 (XBB.1.5.39.3, S:Q52H, USA) with 180 seqs
bf9087d - Cornelius Roemer, 2023-07-23 16:13:05 +0200 : Designate FT.3.1 (XBB.1.5.39.3.1, S:K478R, S:D1168H, Canada/USA) with 35 seqs
5fdeba3 - Cornelius Roemer, 2023-07-23 16:14:42 +0200 : Designate FT.4 (XBB.1.5.39.4, S:E180Q, Germany) with 70 seqs
32f5f23 - Cornelius Roemer, 2023-07-23 16:53:53 +0200 : Designate GA.4 (XBB.1.17.1.4, S:K356T, ORF1a:N1080D, ORF1a:S2553F, Nigeria) with 25 seqs
5ed5059 - Cornelius Roemer, 2023-07-23 16:57:33 +0200 : Designate GA.5 (XBB.1.17.1.5, T23797C) with 200 seqs
188af0f - Cornelius Roemer, 2023-07-23 17:00:49 +0200 : Designate GA.6 (XBB.1.17.1.6, ORF1a:I2138V, G8785A, Ghana) with 150 seqs
bcd8f94 - Cornelius Roemer, 2023-07-23 17:02:15 +0200 : Designate GA.6.1 (XBB.1.17.1.6.1, S:478R, A19767G, C29642T) with 18 seqs
e27b040 - Cornelius Roemer, 2023-07-23 17:04:28 +0200 : Designate FW.3 (XBB.1.28.1.3, ORF1a:D2627N) with 40 seqs
d9b1567 - Cornelius Roemer, 2023-07-23 19:55:27 +0200 : Designate HD.1.1 (XBB.1.5.93.1.1, S:K356T, Dominican Republic) with 8 seqs
6c5de2e - Cornelius Roemer, 2023-07-23 19:57:43 +0200 : Designate FL.13.3 (XBB.1.9.1.13.3, T19110C) with 480 seqs
b51f6c4 - Cornelius Roemer, 2023-07-23 19:58:42 +0200 : Designate FL.13.3.1 (XBB.1.9.1.13.3.1, S:E154Q, England) with 90 seqs
6c38978 - Cornelius Roemer, 2023-07-23 20:00:19 +0200 : Designate FL.2.3.1 (XBB.1.9.1.2.3.1, S:K356T, China) with 7 seqs
ac1fcdc - Cornelius Roemer, 2023-07-23 20:02:53 +0200 : Designate XBB.1.16.17 (S:E554K) with 30 seqs
0aeb05b - Cornelius Roemer, 2023-07-23 20:06:24 +0200 : Designate FY.2.1 (S:A684V) with 75 seqs
063a961 - Cornelius Roemer, 2023-07-23 20:08:23 +0200 : Designate FY.4.1.1 (XBB.1.22.1.4.1.1, S:S704L) with 14 seqs
4504d16 - Cornelius Roemer, 2023-07-23 20:09:50 +0200 : Designate FY.7 (XBB.1.22.1.7, S:G769A, S:D1168E) with 7 seqs
382e492 - Cornelius Roemer, 2023-07-23 20:11:39 +0200 : Designate XBB.1.42.2 (C6040T, G9049A) with 500 seqs
284e1e5 - Cornelius Roemer, 2023-07-23 20:13:51 +0200 : Designate HL.1 (XBB.1.42.2.1, S:E583D) with 25 seqs
e0028e4 - Cornelius Roemer, 2023-07-23 20:14:58 +0200 : Designate HL.2 (XBB.1.42.2.2, S:S929N, China) with 10 seqs
84c9030 - Cornelius Roemer, 2023-07-23 20:17:52 +0200 : Designate HM.1 (XBB.1.5.30.1, S:N481K, Canada/Australia) with 50 seqs
b196c8a - Cornelius Roemer, 2023-07-23 20:20:46 +0200 : Designate FL.28 (XBB.1.9.1.28, S:K478R, ORF1a:S1520F, ORF3a:R68I, Spain) with 30 seqs
76918fd - Xu Zou, 2023-07-24 08:13:02 +0800 : Merge branch 'cov-lineages:master' into master
1a4e694 - HynnSpylor, 2023-07-24 11:26:30 +0800 : Update lineage_notes.txt
0bae7d2 - Federico Gueli, 2023-07-24 14:51:32 +0200 : Update lineage_notes.txt
798e525 - Federico Gueli, 2023-07-24 14:57:23 +0200 : Update lineage_notes.txt
a3def5f - Federico Gueli, 2023-07-24 15:02:19 +0200 : Update lineage_notes.txt
966d9d1 - Federico Gueli, 2023-07-24 15:06:35 +0200 : Update lineage_notes.txt
7b5fbd5 - Federico Gueli, 2023-07-24 15:12:14 +0200 : Update lineage_notes.txt
428e00c - Federico Gueli, 2023-07-24 15:16:52 +0200 : Update lineage_notes.txt
fe6f9b1 - Federico Gueli, 2023-07-24 15:26:16 +0200 : Update lineage_notes.txt
5a89fb0 - Federico Gueli, 2023-07-24 15:31:44 +0200 : Update lineage_notes.txt
f2f2355 - Federico Gueli, 2023-07-24 16:04:39 +0200 : Update lineage_notes.txt
c71b0f4 - Angie Hinrichs, 2023-07-24 12:49:25 -0700 : Merge pull request #2124 from HynnSpylor/patch-2
f1b813c - Angie Hinrichs, 2023-07-24 12:50:12 -0700 : Merge pull request #2123 from aviczhl2/master
2f165e4 - Angie Hinrichs, 2023-07-24 13:00:03 -0700 : Merge branch 'master' into patch-4
6f230b9 - Angie Hinrichs, 2023-07-24 13:03:50 -0700 : Merge pull request #2125 from FedeGueli/patch-4
d966878 - Angie Hinrichs, 2023-07-24 13:08:00 -0700 : Merge pull request #2126 from FedeGueli/patch-5
5641c1f - Angie Hinrichs, 2023-07-24 13:08:35 -0700 : Merge pull request #2127 from FedeGueli/patch-6
88242cf - Angie Hinrichs, 2023-07-24 13:09:15 -0700 : Merge pull request #2128 from FedeGueli/patch-7
6de5b35 - Angie Hinrichs, 2023-07-24 13:10:59 -0700 : Merge branch 'master' into patch-8
fafa6c0 - Angie Hinrichs, 2023-07-24 13:12:10 -0700 : Merge pull request #2129 from FedeGueli/patch-8
857a4b1 - Cornelius Roemer, 2023-07-24 22:11:30 +0200 : Designate XBB.1.5.97 (S:T941S, C7834T, New Zealand/Australia) with 500 seqs
eabb741 - Angie Hinrichs, 2023-07-24 13:14:22 -0700 : Merge branch 'master' into patch-9
613ab42 - Cornelius Roemer, 2023-07-24 22:15:07 +0200 : Designate EG.1.7 (XBB.1.9.2.1.7, S:E156V, Europe) with 75 seqs
13930b0 - Cornelius Roemer, 2023-07-24 22:17:37 +0200 : Designate EG.1.8 (S:S640F, ORF1b:D161G, ORF1b:P2321L, China) with 40 seqs
ddbe506 - Angie Hinrichs, 2023-07-24 13:21:04 -0700 : Merge pull request #2130 from FedeGueli/patch-9
7fd3739 - Cornelius Roemer, 2023-07-24 22:22:04 +0200 : Designate EG.4.4 (ORF1a:Y1465C, ORF1b:H873Y, Germany/Austria)
f619222 - Angie Hinrichs, 2023-07-24 13:28:28 -0700 : Merge pull request #2132 from FedeGueli/patch-11
f4374bb - Cornelius Roemer, 2023-07-24 22:28:49 +0200 : Designate FK.1.4.1 (S:G181A, Australia/Puerto Rico) with 34 seqs
9239925 - Cornelius Roemer, 2023-07-24 22:33:07 +0200 : Designate FK.1.1.2 (C9223T, T23071G, 700 seqs) and FK.1.1.1 (S:V445A, Australia, 20 seqs)
a1512d6 - Cornelius Roemer, 2023-07-24 22:37:54 +0200 : Designate HN.1 (FL.1.5.1.1, S:A67S, Dominican Republic) with 15 seqs
d6ce80d - Cornelius Roemer, 2023-07-24 22:40:49 +0200 : Designate FL.29 (S:490S, ORF1b:I2331V) with 200 seqs
a7ac99d - Angie Hinrichs, 2023-07-24 13:44:26 -0700 : Merge branch 'master' into patch-12
80327ff - Angie Hinrichs, 2023-07-24 13:46:39 -0700 : Merge pull request #2133 from FedeGueli/patch-12
fa6b8fd - Angie Hinrichs, 2023-07-24 13:47:16 -0700 : Merge pull request #2134 from FedeGueli/patch-13
ada6ac4 - Cornelius Roemer, 2023-07-24 22:48:42 +0200 : Designate EG.9 (S:403K, ORF1a:T1474I, ORF1b:N969S) with 48 seqs
12173ea - Cornelius Roemer, 2023-07-24 22:52:03 +0200 : Designate EG.9.1 (S:A344T, C13767T) with 30 seqs
4bbcc53 - Cornelius Roemer, 2023-07-24 22:53:48 +0200 : Designate EG.10 (S:A344T, S:R403K, Germany/Austria) with 30 seqs
5cc9938 - Cornelius Roemer, 2023-07-24 22:55:37 +0200 : Designate EG.10.1 (S:S494P, S:A701V) with 20 seqs
ae7a5de - Cornelius Roemer, 2023-07-25 18:23:19 +0200 : Designate DV.7.2 (C703T, England) with 50 seqs
5d45f7e - Cornelius Roemer, 2023-07-25 18:26:58 +0200 : Designate EG.5.2.1 (S:S704L, USA) with 30 seqs
6aeacc6 - Cornelius Roemer, 2023-07-25 18:28:40 +0200 : Designate EG.5.2.1 (XBB.1.9.2.5.2.2, ORF1b:T239I, China) with 40 seqs
4889ca7 - Cornelius Roemer, 2023-07-25 18:30:01 +0200 : Designate EG.5.2.3 (S:S704L, S:N1178D, Austria/USA) with 28 seqs
489cbbc - Cornelius Roemer, 2023-07-25 18:41:50 +0200 : Designate XBB.1.16.18 (ORF7a:T39I) with 450 seqs
662ead2 - Cornelius Roemer, 2023-07-25 18:43:30 +0200 : Designate XBB.1.16.19 (ORF1b:V839I) with 400 seqs
4f8dd09 - Cornelius Roemer, 2023-07-25 18:45:25 +0200 : Designate XBB.1.16.20 (ORF7b:S31L) with 200 seqs
77bccd6 - Cornelius Roemer, 2023-07-25 18:46:49 +0200 : Designate XBB.1.16.21 (ORF1a:V4072I) with 300 seqs
8174952 - Cornelius Roemer, 2023-07-25 18:47:57 +0200 : Designate XBB.1.16.22 (ORF3a:E242Q) with 300 seqs
095c247 - Cornelius Roemer, 2023-07-25 18:53:01 +0200 : Designate XBB.1.5.98 (S:E554K, ORF8:V32L, Ghana) with 100 seqs
e36678e - Cornelius Roemer, 2023-07-25 18:55:22 +0200 : Designate XBB.1.5.99 (S:E554K, ORF1a:T1168I, C823T, Ecuador) with 70 seqs
b4aa752 - Cornelius Roemer, 2023-07-26 11:34:47 +0200 : Designate HP.1 (XBB.1.5.55.1, N:L13F, US/Mexico, 50 seqs), HP.1.1 (S:478R, Mexico, 25 seqs)
8ecd6a4 - Cornelius Roemer, 2023-07-26 11:40:45 +0200 : Redesignate XBB.1.5.99 -> HQ.1 (XBB.1.5.92.1) as it is a sublineage
34eb52f - Cornelius Roemer, 2023-07-26 11:43:42 +0200 : Designate XBB.1.5.99 (ORF1a:V1122A, ORF1a:T2121I, Slovakia/Austria) with 500 seqs
4257140 - Cornelius Roemer, 2023-07-26 11:50:04 +0200 : Designate HR.1 (XBB.1.5.77.1, S:478R, N:I292V, Costa Rica/USA) with 30 seqs
158fe24 - Cornelius Roemer, 2023-07-26 12:05:24 +0200 : Designate HS.1 (XBB.1.5.95.1, S:478R, Mexico) with 80 seqs
c7e4f0a - Cornelius Roemer, 2023-07-26 12:52:22 +0200 : Designate HT.1 (XBB.1.5.49.1, S:148T, T4798C, Mexico) with 200 seqs
a9a549a - Cornelius Roemer, 2023-07-26 12:56:52 +0200 : Designate HT.2 (XBB.1.5.49.2, S:T51I) with 450 seqs
005e34f - Cornelius Roemer, 2023-07-26 15:23:08 +0200 : Designate XBB.1.19.2 (S:P521S, Pakistan) with 50 seqs
166dd74 - Cornelius Roemer, 2023-07-26 15:29:47 +0200 : Designate GW.5 (XBB.1.19.1.5, S:K478I, S:L455F, S:L456L, Pakistan) with 5 seqs
8cafcde - Cornelius Roemer, 2023-07-26 23:20:10 +0200 : Designate FL.20.1 (XBB.1.9.1.20.1, S:L455W, Northern Ireland/England, from #2145) with 11 seqs
c9178b3 - Cornelius Roemer, 2023-07-27 13:37:34 +0200 : Designate FL.21.1 (Alias of XBB.1.9.1.21, S:D1084N, South Korea, from #2143) with 100 seqs
5c44790 - Cornelius Roemer, 2023-07-27 13:42:05 +0200 : Designate FL.21.2 (ORF1a:V1019F, ORF1a:I2873M, China) with 160 seqs
1b21db9 - Cornelius Roemer, 2023-07-27 13:48:57 +0200 : Designate FT.3.1.1 (XBB.1.5.39.3.1.1, S:A348S, USA) with 30 seqs
1007720 - Cornelius Roemer, 2023-07-27 13:52:52 +0200 : Designate FL.19.1 (XBB.1.9.1.19.1, S:F456L (22928C), ORF1b:A1877V, Spain/Italy/Puerto Rico, from #2138) with 25 seqs
ec18a92 - Cornelius Roemer, 2023-07-27 13:55:17 +0200 : Update FL.19 defining mutations in lineage note
5083cb2 - Cornelius Roemer, 2023-07-27 13:58:43 +0200 : Designate FU.5 (XBB.1.16.1.5, S:K97E, ORF1a:R542C, Bangladesh, from #2137) with 50 seqs
3bcee93 - Cornelius Roemer, 2023-07-27 14:01:49 +0200 : Designate HU.1 (XBB.1.22.2.1, S:K529N) from #2136 with 50 seqs
8881481 - Cornelius Roemer, 2023-07-27 14:01:49 +0200 : Designate HU.1 (XBB.1.22.2.1, S:K529N) from #2136, and HU.2 (S:T76I, AUS/NZ)
502c1d1 - aviczhl2, 2023-07-28 12:15:32 +0800 : modified: automated-issue-ref.ipynb modified: autoref/milestone.txt modified: autoref/milestone_sub.txt modified: autoref/missing_refs.txt
8f55f43 - aviczhl2, 2023-07-28 12:16:13 +0800 : Add 2 refs from main page and 34 refs from sars_cov_2_variants page. modified: automated-issue-ref.ipynb
b55f642 - Angie Hinrichs, 2023-07-27 22:24:25 -0700 : Merge pull request #2149 from aviczhl2/master
7c88225 - Cornelius Roemer, 2023-07-28 16:06:59 +0200 : Designate FP.2.1.1 (XBB.1.11.1.2.1.1, S:L452Q, USA/Austria) with 11 seqs
9a8e528 - Cornelius Roemer, 2023-07-28 16:08:03 +0200 : Designate FP.2.1.2 (XBB.1.11.1.2.1.2, S:P521S, Indonesia) with 9 seqs
adeff5d - aviczhl2, 2023-07-29 20:04:04 +0800 : modified: automated-issue-ref.ipynb
fca3e2a - aviczhl2, 2023-07-29 20:11:22 +0800 : update automated-issue-ref.ipynb to adapt to the new manual ref format remove some duplicated autorefs in lineage_notes.txt
56e2b22 - Angie Hinrichs, 2023-07-29 22:42:06 -0700 : Merge pull request #2151 from aviczhl2/master
d1bdf0c - Xu Zou, 2023-07-30 16:55:15 +0800 : Manually add some ref issues w/o milestones
54284dc - Angie Hinrichs, 2023-07-31 10:13:41 -0700 : Merge pull request #2154 from aviczhl2/master
e4b8491 - Cornelius Roemer, 2023-08-01 13:10:03 +0200 : Add extra DV.7.1 designations
08aa9a8 - Cornelius Roemer, 2023-08-02 15:07:20 +0200 : Designate HV.1 (EG.5.1.6.1, S:L452R, USA) with 11 seqs
54d2bd4 - Cornelius Roemer, 2023-08-02 15:17:22 +0200 : Designate GK.3 (XBB.1.5.70.3, ORF1a:A876S, Brazil/USA/Canada, 30 seqs) and GK.3.1 (S:A475V, USA, 9 seqs)
6400aed - Cornelius Roemer, 2023-08-02 15:47:21 +0200 : Designate HW.1 (XBC.1.6.3.1, ORF1a:T1597I, ORF1a:A2123V, Australia) with 300 seqs
18ad1a9 - Cornelius Roemer, 2023-08-02 15:49:14 +0200 : Designate HW.1.1 (XBC.1.6.3.1.1, S:N460H, T16242A, C22120T, USA/Ireland) with 8 seqs
6655aae - Cornelius Roemer, 2023-08-02 18:53:56 +0200 : Designate XBB.1.5.100 (S:V1122M, USA/Mexico) with 350 seqs
8fceb45 - Cornelius Roemer, 2023-08-02 18:55:20 +0200 : Designate HY.1 (XBB.1.5.100.1, S:478R, US/Mexico) with 60 seqs
181f689 - Cornelius Roemer, 2023-08-04 13:34:41 +0200 : Fix alias error for HY, should be XBB.1.5.100 not XBC.1.5.100
9326c3a - Cornelius Roemer, 2023-08-04 13:42:20 +0200 : Designate GJ.1.2.1 (XBB.2.3.3.1.2.1, S:N450D, Singapore/Thailand/South Korea/USA/Spain) with 8 seqs
bdb0eef - Cornelius Roemer, 2023-08-04 13:57:45 +0200 : Designate HZ.1 (XBB.1.5.68.1, S:K478R, USA, 150 seqs), HZ.2 (ORF1a:H3580Y), HZ.3 (ORF1a:I3693T)
6a9f99c - TheZetner, 2023-08-04 12:12:16 -0500 : Update lineage_notes.txt
371da2d - aviczhl2, 2023-08-06 11:52:24 +0800 : add 9 autorefs to lineage_notes.txt
474bd0d - Cornelius Roemer, 2023-08-06 21:42:54 +0200 : Designate BN.1.3.13 (S:V445A, C3817T, C17818T, Taiwan/Japan/South Korea) with 50 seqs
4bd8a9f - Xu Zou, 2023-08-07 14:51:35 +0800 : Merge branch 'cov-lineages:master' into master
77da1fd - Cornelius Roemer, 2023-08-07 21:07:24 +0200 : Designate EG.11 (XBB.1.9.2.11, S:E554K, A26319G, Malaysia) with 40 seqs
e200aa8 - Cornelius Roemer, 2023-08-07 21:11:18 +0200 : Designate GY.8 (XBB.1.16.2.8, S:F456L, C25452T, Japan) with 20 seqs
84bc981 - Cornelius Roemer, 2023-08-07 21:18:49 +0200 : Designate FY.4.2 (XBB.1.22.1.4.2, ORF1a:Y2171F, ORF1b:V2287I, Kenya/USA/Japan) with 30 seqs
5023ce7 - Cornelius Roemer, 2023-08-07 21:22:51 +0200 : Designate XBB.1.22.3 (ORF1a:P3504L, ORF1b:H1838N, Japan) with 50 seqs
bcbbeb7 - Cornelius Roemer, 2023-08-07 21:25:32 +0200 : Designate HU.1.1 (XBB.1.22.2.1.1, S:E471Q, S:Y28H, France/USA) with 30 seqs
9aa524b - Cornelius Roemer, 2023-08-07 21:39:49 +0200 : Extra GJ.1, GJ.1.1, GJ.1.2 designations
475852b - Cornelius Roemer, 2023-08-07 21:41:23 +0200 : Designate GJ.4 (XBB.2.3.3.4, S:M153I) with 100 seqs
371afbe - Cornelius Roemer, 2023-08-07 21:49:59 +0200 : Designate XBB.1.5.101 (ORF7a:E3Q, C14877T, Scandinavia/Poland/Vietnam) with 150 seqs
e0f64b2 - Cornelius Roemer, 2023-08-07 21:58:31 +0200 : Designate FL.2.5 ( S:Q314E) with 90 seqs
ade6b5d - Cornelius Roemer, 2023-08-07 22:01:29 +0200 : Designate EG.12 (XBB.1.9.2.12, S:E554K, N:R195T, ORF1a:T4159I, Oman/Austria/Brunei/India) with 30 seqs
c548c8f - Federico Gueli, 2023-08-08 16:02:15 +0200 : Update lineage_notes.txt
df90568 - ciscorucinski, 2023-08-10 02:09:34 +0900 : Added new workflow to analyze lineage notes
e69140d - ciscorucinski, 2023-08-10 02:13:50 +0900 : Added new workflow to analyze lineage notes
86446a2 - ciscorucinski, 2023-08-10 02:15:23 +0900 : Added new workflow to analyze lineage notes
087b0c7 - ciscorucinski, 2023-08-10 02:23:43 +0900 : Added new workflow to analyze lineage notes
972aff8 - ciscorucinski, 2023-08-10 02:25:25 +0900 : Added new workflow to analyze lineage notes
31b00bb - Christopher Rucinski, 2023-08-10 02:38:20 +0900 : Merge pull request #1 from ciscorucinski/feature/workflow/lineage_notes
5fdf92b - Memorable, 2023-08-10 11:57:03 +0800 : Update lineage_notes.txt
bae36e6 - Cornelius Roemer, 2023-08-10 15:53:01 +0200 : Designate JA.1 (XBB.2.3.13.1, S:F456L (T22928C), Spain/England/France, 30 seqs)
dff1a9f - Cornelius Roemer, 2023-08-10 15:57:31 +0200 : Designate JB.1 (XBB.1.5.53.1, S:N148T, South Africa, 20 seqs)
98c95b7 - Cornelius Roemer, 2023-08-10 15:58:51 +0200 : Designate JB.2 (XBB.1.5.53.2, S:K478R, South Africa/USA) with 12 seqs
3177d1b - Xu Zou, 2023-08-11 15:41:19 +0800 : Merge branch 'master' into master
fbac1b3 - Angie Hinrichs, 2023-08-15 11:00:18 -0700 : Merge pull request #2163 from TheZetner/master
026c92d - Angie Hinrichs, 2023-08-15 11:02:32 -0700 : Merge branch 'master' into master
9c25d05 - Angie Hinrichs, 2023-08-15 11:07:16 -0700 : Merge pull request #2167 from aviczhl2/master
ea4b74e - Angie Hinrichs, 2023-08-15 11:11:56 -0700 : Merge pull request #2175 from FedeGueli/master-1
a2893cb - Angie Hinrichs, 2023-08-15 11:16:11 -0700 : Merge pull request #2177 from ciscorucinski/master
bb72661 - Angie Hinrichs, 2023-08-15 11:18:54 -0700 : Merge pull request #2179 from Memorablea/master-1
c5c340c - Cornelius Roemer, 2023-08-17 17:19:18 +0200 : Designate BA.2.86 with 4 sequences
6e3c06a - Angie Hinrichs, 2023-08-17 14:31:11 -0700 : Removing C823T from description of XBB.1.5.92 because not all sequences with ORF1a:T1168I have C823T (none of the designated sequences do). refs #2146

pango-designation - pango designation v1.21

Published by AngieHinrichs over 1 year ago

Release notes

fe4cc44 - Cornelius Roemer, 2023-05-18 21:55:50 +0200 : Update README.md: recommend partial clone to save 15GB
777d3b8 - InfrPopGen, 2023-05-22 14:08:54 +0100 : Added new lineage XBB.1.5.70 from #1982 with 5 new sequence designations, and 0 updated
79816d8 - InfrPopGen, 2023-05-22 14:10:27 +0100 : Merge pull request #2007 from InfrPopGen/master
4803957 - Cornelius Roemer, 2023-05-23 17:17:11 +0200 : Designate FL.4.1 (S:N450I) with 80 sequences
edd71a5 - Cornelius Roemer, 2023-05-23 17:21:00 +0200 : Designate FL.4.2 (ORF1a:T951I, China) with 20 sequences
ee9b439 - Cornelius Roemer, 2023-05-23 17:26:11 +0200 : Add FL.1.4 (S:478R, S:Q1208H, Vietnam, from issue #1985) with 30 seqs
783e229 - Cornelius Roemer, 2023-05-23 17:29:05 +0200 : Designate FL.13 (G4354A) with 1k seqs
bc1a317 - Cornelius Roemer, 2023-05-23 17:31:00 +0200 : Add FL.13.1 (S:A411S, ORF1a:P80S, China, from #1996) with 100 seqs
b7f3d28 - Cornelius Roemer, 2023-05-23 17:35:41 +0200 : Add FL.14 (S:V1122M, C29311T, C22978T, Russia/Finland) with 100 seqs
ac884a4 - Cornelius Roemer, 2023-05-23 17:37:44 +0200 : Add extra GB.1 designations
b30181a - Cornelius Roemer, 2023-05-23 17:41:11 +0200 : Designate GF.1 (XBB.1.5.24.1 with S:E748V, C19524T) with 250 seqs
f8846db - Cornelius Roemer, 2023-05-23 17:45:56 +0200 : Designate GG.1 (XBB.1.5.38.1, S:478R, Europe) with 40 seqs
79c55b3 - Cornelius Roemer, 2023-05-24 11:29:18 +0200 : Add FK.1.3 (ORF1b:M1839I, on C27804T>ORF1b:L2580I>N:G34E branch, Australia) with 100 seqs
30c8269 - Cornelius Roemer, 2023-05-24 11:31:09 +0200 : Add extra FK.1.1 designations that are wrong on the Usher tree
4349543 - Cornelius Roemer, 2023-05-24 11:34:07 +0200 : Add FK.1.4 (S:S704L, on C27804>ORF7a:Y40H branch, Australia) with 60 seqs
1e2e43b - Cornelius Roemer, 2023-05-24 11:36:58 +0200 : Add FK.1.2.1 (ORF1a:T891I, Germany/Denmark/Finland/Austria) with 170 seqs
1321897 - Cornelius Roemer, 2023-05-24 11:51:24 +0200 : Add FY.1.1 (S:A83S, Malaysia/Japan) with 100 seqs
0e8bf36 - Cornelius Roemer, 2023-05-24 11:53:21 +0200 : Add FY.3.1 (S:I210T, China) with 50 seqs
90a5a41 - Cornelius Roemer, 2023-05-24 11:57:08 +0200 : Add lineage XBB.1.41 (S:L335S, S:R403K, S:486P, possibly common in Central/West Africa, from #1997) with 15 seqs
ba1ad48 - Cornelius Roemer, 2023-05-24 11:59:11 +0200 : Add EG.5.2 (N:L161F) with 130 seqs
399b473 - Cornelius Roemer, 2023-05-24 12:00:43 +0200 : Add FY.4.1 (S:S494P, Kenya) with 20 seqs
c5bd894 - Cornelius Roemer, 2023-05-24 12:28:41 +0200 : Fix lineage_notes.txt
893c42c - Cornelius Roemer, 2023-05-25 17:24:33 +0200 : Add XBB.1.5.71 (S:V511I, Spain) with 80 designations
9056350 - Cornelius Roemer, 2023-05-25 17:29:44 +0200 : Add XBB.1.16.7 (S:T732I after T12214C, Singapore/Japan/SouthKorea) with 90 designations
0cb8903 - Cornelius Roemer, 2023-05-26 11:07:14 +0200 : Add XBB.1.16.8 (S:T732I after C28531T, India/USA/China/Australia) with 100 seqs
cd66713 - InfrPopGen, 2023-05-27 11:37:05 +0100 : Fixed typo introduced to lineage_notes.txt entry for FR.1
d7e4664 - InfrPopGen, 2023-05-27 11:38:41 +0100 : Merge pull request #2022 from InfrPopGen/master
981bab4 - InfrPopGen, 2023-05-29 12:53:13 +0100 : Added new lineage FL.15 from #1994 with 53 new sequence designations, and 0 updated designations
bda46e2 - InfrPopGen, 2023-05-29 12:54:52 +0100 : Merge pull request #2026 from InfrPopGen/master
c36901d - Cornelius Roemer, 2023-05-30 10:17:47 +0200 : Designate EG.6 (XBB.1.9.2 with C1684T, Israel) with 250 seqs
d0acddd - Cornelius Roemer, 2023-05-30 10:19:06 +0200 : Designate EG.6.1 (S:456L, Israel/Japan/Canada) with 70 seqs
d0696fb - Cornelius Roemer, 2023-05-30 11:44:42 +0200 : Designate FP.2 (XBB.1.11.1 with S:F186S, ORF1a:V3078I, Indonesia/Malaysia/Singapore) with 70 seqs
b5e3461 - Cornelius Roemer, 2023-05-30 11:46:16 +0200 : Designate FP.3 (XBB.1.11.1.3, S:478R, Indonesia/Malaysia) with 40 seqs
8a1522f - Cornelius Roemer, 2023-05-30 11:49:40 +0200 : Designate FP.4 (XBB.1.11.1.4, C3241T, C2536T, Vietnam/South Korea/Japan) with 150 seqs
4c3870b - Cornelius Roemer, 2023-05-30 11:51:03 +0200 : Designate FP.2.1 (S:478R, ORF1a:I693T, ORF1a:T951A, ORF3a:W149C, Indonesia) with 35 seqs
e6e3ffb - Cornelius Roemer, 2023-05-30 19:33:03 +0200 : Designate XBB.1.16.9 (S:F456L (T22930G), ORF1a:S2500F, Canada/Sweden/SouthKorea/USA) with 10 seqs
ecb7f8c - Cornelius Roemer, 2023-05-30 19:46:24 +0200 : Designate CM.7.1 (S:K147E, Europe) with 20 seqs
300f836 - Cornelius Roemer, 2023-05-30 19:49:09 +0200 : Designate XBB.2.10 (S:Q52H, Latvia/Poland) with 100 seqs
c9a4315 - Cornelius Roemer, 2023-05-30 19:59:37 +0200 : Designate FL.16 (S:478R, ORF1a:P1018T, Indonesia) with 30 seqs
27fc997 - Cornelius Roemer, 2023-05-30 20:07:27 +0200 : Specify nuc mutations for S:F456L in lineage notes (there are 3 options)
ec4edbb - Cornelius Roemer, 2023-05-30 20:10:40 +0200 : Add 456L nuc mutation for EG.6.1 to lineage notes
e2592d6 - Cornelius Roemer, 2023-05-30 21:19:07 +0200 : Redesignate FL.16 as XBB.1.9.7 as it does not have XBB.1.9.1 defining 11956C
b855126 - Cornelius Roemer, 2023-05-31 00:26:50 +0200 : Designate XBB.1.5.72 (S:F456L (T22928C), ORF1a:G445S, T9823C, T10204C, South America) with 30 seqs
b77684a - Cornelius Roemer, 2023-05-31 12:25:08 +0200 : Designate FR.1.1 (S:P82H, ORF1a:L293F, China) with 80 seqs
5bf2295 - Cornelius Roemer, 2023-05-31 12:28:36 +0200 : Designate FR.1.2 (S:R190M, China) with 15 seqs
23a9cbc - Cornelius Roemer, 2023-05-31 12:54:34 +0200 : Designate XBB.1.42 (S:486P, S:Q613H, on ORF1a:T4175I branch with XBB.1.9, Indonesia/Malaysia/China) with 180 seqs
ef3c041 - Cornelius Roemer, 2023-05-31 15:22:43 +0200 : Designate XBB.1.43 (G11071A, Indonesia, from #2015) with 200 seqs
1f78bf8 - Cornelius Roemer, 2023-05-31 15:25:08 +0200 : Designate XBB.1.43.1 (S:486P, ORF1a:A2621V, A20713C, from #2015) with 160 seqs
12f93ab - Cornelius Roemer, 2023-06-01 17:51:20 +0200 : Designate XBB.2.6.1 (S:P521S, Peru, from #1869) with 290 seqs
ec9cb23 - Cornelius Roemer, 2023-06-01 17:58:06 +0200 : Designate GH.1 (XBB.2.6.1 with ORF9b:P51Q, T6895C, T9148C, A15192C, Peru, from #1869) with 230 seqs
05291d7 - Cornelius Roemer, 2023-06-01 18:05:58 +0200 : Designate XBB.2.6.2 (S:T19L, Peru) with 160 seqs
4164f55 - Cornelius Roemer, 2023-06-01 18:16:56 +0200 : Designate XBB.2.3.12 (S:S494P, from #2029) with 60 seqs
a3e16cb - Cornelius Roemer, 2023-06-01 18:27:52 +0200 : Designate XBB.1.5.73 (T28271C, USA/Peru) with 600 seqs
b123380 - Cornelius Roemer, 2023-06-01 18:34:31 +0200 : Designate FD.2.1 (XBB.1.5.15.2.1, ORF1a:D3022N, Peru) with 30 seqs
218f387 - Cornelius Roemer, 2023-06-01 18:39:37 +0200 : Designate XBB.1.5.74 (S:K462R, ORF1b:V728I, Peru, from #1998) with 40 seqs
16473ab - Cornelius Roemer, 2023-06-01 18:47:47 +0200 : Designate XBB.1.5.75 (C3695T, Peru/France) with 450 seqs
e4a9ab4 - Cornelius Roemer, 2023-06-01 19:24:17 +0200 : Designate XBB.1.5.76 (ORF1a:T3696A, Chile) with 650 seqs
b911018 - Cornelius Roemer, 2023-06-01 19:27:51 +0200 : Designate XBB.1.5.77 (T18732C, Colombia/USA) with 1300 seqs
f39a7c6 - Cornelius Roemer, 2023-06-01 19:33:13 +0200 : Designate XBB.1.5.78 (ORF1a:N460D, Mexico) with 250 seqs
0894cc7 - Cornelius Roemer, 2023-06-01 19:38:16 +0200 : Designate XBB.1.5.79 (N:Q260L, Mexico/USA) with 400 seqs
9640b11 - Cornelius Roemer, 2023-06-01 19:44:40 +0200 : Designate XBB.1.5.80 (A16812G, C21812T, USA/Romania) with 500 seqs
b5632de - Cornelius Roemer, 2023-06-01 19:50:39 +0200 : Designate XBB.1.5.81 (S:478R, G4657A, South Africa) with 20 seqs
5d18f8c - InfrPopGen, 2023-06-02 11:47:15 +0100 : Added new lineage GJ.1 from #2005 with 43 new sequence designations, and 2 updated from XBB.2.3.3
3e2dc19 - InfrPopGen, 2023-06-02 11:48:43 +0100 : Merge pull request #2033 from InfrPopGen/master
5ea2b89 - ciscorucinski, 2023-06-04 17:50:13 +0900 : fixed alias irregularity (ec9cb23)
5197b4a - Cornelius Roemer, 2023-06-06 17:09:00 +0200 : Designate FL.1.5 (S:456L (T22928C), ORF1b:K2557R, from #1985 and #2036) with 60 seqs
f231e5e - Cornelius Roemer, 2023-06-06 17:10:38 +0200 : Designate FL.1.5.1 (S:478R, from #2036) with 7 seqs
ed98932 - Cornelius Roemer, 2023-06-06 17:18:23 +0200 : Designate GK.1 (Alias of XBB.1.5.70.1, S:S704L, Brazil, from #2025) with 100 seqs
7c80458 - Cornelius Roemer, 2023-06-06 17:28:03 +0200 : Designate XBB.1.34.1 (S:E554K, ORF1b:P970L) with 20 seqs
ee0c54c - Cornelius Roemer, 2023-06-06 17:30:06 +0200 : Designate XBB.1.34.2 (S:K182I, ORF8:C90F, ORF1a:G989C) with 10 seqs
54905da - Angie Hinrichs, 2023-06-06 11:34:39 -0700 : Merge pull request #2035 from ciscorucinski/master
8f4b2eb - Cornelius Roemer, 2023-06-07 18:10:08 +0200 : Designate XCD (XBB.1*/BQ.1.1.25*, S:R214H, S:478I, Indonesia, from #2042) with 14 seqs
52a02da - Cornelius Roemer, 2023-06-07 18:33:05 +0200 : Designate XBB.8.2 (S:486P, ORF1a:A2529V, Reunion/Mayotte/Mauritius, from #1995) with 25 seqs
368ca3b - Cornelius Roemer, 2023-06-08 13:06:28 +0200 : Fix typo in lineages.csv (XBD -> XCD)
76b33d3 - Cornelius Roemer, 2023-06-09 20:20:19 +0200 : Designate EG.7 (S:R403K, S:L513F, ORF1a:N2531S, Germany/England) with 18 seqs
1e361de - Cornelius Roemer, 2023-06-09 20:27:59 +0200 : Designate GJ.1.1 (XBB.2.3.3.1.1, S:A222V, N:R319H, ORF1a:V1915I) with 30 seqs
71c4692 - Cornelius Roemer, 2023-06-09 20:29:46 +0200 : Designate GJ.2 (XBB.2.3.3.2, S:I1114S, Europe) with 50 seqs
0666c34 - Cornelius Roemer, 2023-06-09 20:39:22 +0200 : Designate FL.1.10.1 (S:E554K, C4234T, South Korea) with 50 seqs
55342b2 - Cornelius Roemer, 2023-06-09 20:47:37 +0200 : Designate XBB.1.41.1 (S:478R, France) with 10 seqs
11dc754 - Cornelius Roemer, 2023-06-09 20:59:34 +0200 : Designate XCE (BQ.1* and FY.1 (XBB.1.22.1.1), Indonesia, South Korea, France, from lineage-proposals#123) with 45 seqs
74eed87 - Cornelius Roemer, 2023-06-09 21:14:25 +0200 : Designate FE.1.1.1 (ORF1a:T999I, North America) with 180 seqs
80ddb92 - Cornelius Roemer, 2023-06-09 21:16:00 +0200 : Designate FE.1.1.2 (S:K1086R, Brazil/USA) with 28 seqs
66919aa - Cornelius Roemer, 2023-06-09 21:27:08 +0200 : Designate GL.1 (Alias of XAY.1.1.1.1, Europe, S:D420N, C19441T, from issue #2032) with 7 seqs
53552f5 - Cornelius Roemer, 2023-06-10 13:05:28 +0200 : Designate GM.1 (XBB.2.3.6.1, S:P621S, Singapore) and GM.2 (S:G181R) with 90/40 seqs
8318e02 - Cornelius Roemer, 2023-06-10 13:09:02 +0200 : Designate XCF (XBB* and FE.1 (XBB.1.18.1.1), possibly South America, from lineage-proposals#2) with 30 seqs
e0b8222 - Cornelius Roemer, 2023-06-10 13:14:09 +0200 : Designate BQ.1.1.75 (S:K182N, S:F456L, Reunion) with 15 seqs
d2202b0 - Cornelius Roemer, 2023-06-10 13:16:37 +0200 : Designate XBB.1.5.82 (S:K444R, Sweden/Reunion) with 50 seqs
18ff637 - Cornelius Roemer, 2023-06-10 13:19:55 +0200 : Designate XBB.1.5.83 (A10624G, South Africa) with 70 seqs
6afe413 - Cornelius Roemer, 2023-06-10 13:56:40 +0200 : Designate XBB.1.5.84 (S:M177I, South Africa) with 100 seqs
f29a65f - Cornelius Roemer, 2023-06-10 13:59:08 +0200 : Designate GN.1 (XBB.1.5.73.1, S:F456L (22928C), Peru/Costa Rica) with 25 seqs
c2c8d97 - Cornelius Roemer, 2023-06-10 14:09:16 +0200 : Designate XBB.1.5.85 (S:L176F, S:478R, Trinidad and Tobago/Hong Kong) with 50 seqs
7bb717e - Cornelius Roemer, 2023-06-10 14:12:05 +0200 : Designate XBB.1.5.86 (ORF1a:G2868S, Brazil) with 600 seqs
b43c4a6 - Cornelius Roemer, 2023-06-10 16:01:22 +0200 : Designate DV.7 (S:T883I, ORF1a:A3548V, England, from #2038) with 280 seqs
12de9c5 - Cornelius Roemer, 2023-06-10 16:04:45 +0200 : Designate DV.8 (S:Q613H, C8299T, C19602T, Sweden) with 150 seqs
12df5b7 - Cornelius Roemer, 2023-06-10 16:06:39 +0200 : Designate CH.1.1.29 (S:613H, ORF1a:P371S, Europe/Canada) with 28 seqs
cbd5a7b - Cornelius Roemer, 2023-06-10 16:12:27 +0200 : Designate DV.6.1 (S:Q613H, T15591C, Central Europe), DV.6.2 (S:Q613H, C6628T, C18032T, Asia)
15e25ea - Cornelius Roemer, 2023-06-10 16:18:06 +0200 : Designate GK.1 (CH.1.1.11.1, S:Q52H, ORF7a:T28I, Europe) with 130 seqs
a83fc90 - Cornelius Roemer, 2023-06-10 19:18:58 +0200 : Designate GK.2 (ORF6:S41F, T13450C, Europe) with 600 seqs
bd51bb3 - Cornelius Roemer, 2023-06-10 19:21:41 +0200 : Fix typos in lineage_notes.txt and lineages.csv
e641053 - Cornelius Roemer, 2023-06-10 19:36:47 +0200 : Designate GP.3 (T5218C, A16878G, A26519G, C29236T, Ireland) with 400 seqs
c23ed47 - Cornelius Roemer, 2023-06-10 19:40:43 +0200 : Designate FK.1.2.2 (ORF1a:D139N, ORF1a:R226K, ORF1a:Q556K, ORF3a:T64N, T11737C, AUS/NZ) with 120 seqs
a024061 - Cornelius Roemer, 2023-06-10 19:48:15 +0200 : Designate FR.1.3 (ORF1a:A206V, ORF1b:A517V, N:G34E, China, from #2039) with 90 seqs
9e6fb7e - Cornelius Roemer, 2023-06-10 19:51:57 +0200 : Designate BN.1.3.12 (C14358T, T22672C, South Korea/Thailand/Germany) with 900 seqs
ee667ae - Cornelius Roemer, 2023-06-10 20:00:20 +0200 : Designate BQ.1.1.76 (C15180T, Slovenia/Austria) with 200 seqs
ae88611 - Cornelius Roemer, 2023-06-10 20:04:05 +0200 : Designate BQ.1.1.77 (C12853T, ORF1b:A1428V, USA/France) with 350 seqs
b1577fa - Cornelius Roemer, 2023-06-10 20:06:33 +0200 : Designate BQ.1.1.78 (ORF1a:M315I, ORF1b:P1953L, Japan) with 550 seqs
c67010a - Cornelius Roemer, 2023-06-10 20:11:21 +0200 : Designate EN.1.1 (BQ.1.1.46.1.1, S:M153I, France) with 110 seqs
ff71f8b - Cornelius Roemer, 2023-06-10 20:22:15 +0200 : Designate XBC.1.7 (S:478R, S:444T, Philippines/Australia/Hong Kong) with 6 seqs
0910a30 - Cornelius Roemer, 2023-06-10 20:25:17 +0200 : Designate XBC.1.1.2 (S:L244F, ORF7b:L32F, Australia) with 100 seqs
aecb12c - Cornelius Roemer, 2023-06-10 20:30:40 +0200 : Designate XBL.3.1 (S:I726V, C10252T, G29702A, Singapore/South Korea/Thailand) with 50 seqs
601ce04 - Cornelius Roemer, 2023-06-10 20:33:50 +0200 : Designate GQ.1 (CH.1.1.3.1, S:486P, ORF1a:H1545Q, ORF1b:V1520L, Australia/New Zealand, from #1872) with 30 seqs
bd2e9fe - Cornelius Roemer, 2023-06-10 20:36:45 +0200 : Designate CH.1.1.30 (ORF1a:Y2968H, C17913T, Germany/Netherlands/Austria) with 150 seqs
58dba75 - Cornelius Roemer, 2023-06-10 20:40:19 +0200 : Designate BR.5.1 (ORF1a:K2029N, ORF1b:T5923I, A20289G, South Korea) with 400 seqs
7c91309 - Cornelius Roemer, 2023-06-10 21:27:50 +0200 : Fix FL.1.10.1 -> FL.10.1 in lineages.csv
8634eda - Cornelius Roemer, 2023-06-10 21:30:39 +0200 : Fix typo in DV.7 lineage notes (S:T883I -> S:L858I)
79e18fa - Cornelius Roemer, 2023-06-11 15:53:50 +0200 : Designate XBB.1.15.1 (S:486P, A19464G, C9803T, Brazil/Chile/USA) with 50 seqs
7262a55 - Cornelius Roemer, 2023-06-11 16:06:30 +0200 : Designate XBB.1.44 (S:T747I, Russia) with 100 seqs
46bcf7b - Cornelius Roemer, 2023-06-11 16:08:20 +0200 : Designate XBB.1.44.1 (S:486P, ORF3a:S195F, Russia/China) with 60 seqs
bbe8cc9 - Cornelius Roemer, 2023-06-11 16:10:10 +0200 : Designate XBB.1.45 (T21000C, USA/Singapore/Malaysia) with 200 seqs
c6a8528 - Cornelius Roemer, 2023-06-11 16:11:38 +0200 : Designate XBB.1.45.1 (S:486P, A3139G, A19137G, C28291T, USA/Portugal) with 200 seqs
234edc5 - Cornelius Roemer, 2023-06-11 16:14:06 +0200 : Designate EU.1.1.2 (S:A1070S, Germany/Finland/Denmark/Sweden) with 60 seqs
9119c66 - Cornelius Roemer, 2023-06-11 16:17:26 +0200 : Designate XBB.1.46 (ORF1a:C1114F, Singapore/Malaysia) with 100 seqs
f8145b4 - Cornelius Roemer, 2023-06-11 16:20:41 +0200 : Designate XBB.1.47 (ORF1a:T1761I, ORF1a:C2180Y, ORF1a:I2854V, Philippines/Singapore/Japan) with 29 seqs
3578f58 - Cornelius Roemer, 2023-06-11 16:22:46 +0200 : Designate XBB.1.47.1 (S:486P, S:A260V, S:V1122G, Japan/USA/Australia/Germany) with 15 seqs
6088c2a - Cornelius Roemer, 2023-06-11 17:53:46 +0200 : Fix #2048
ed1d959 - Cornelius Roemer, 2023-06-11 17:54:59 +0200 : Add issue to lineage notes for XBB.1.44.1
e62473e - Cornelius Roemer, 2023-06-11 18:06:34 +0200 : Designate XBB.2.11 (C18129T) with 800 seqs
829ec77 - Cornelius Roemer, 2023-06-11 18:08:02 +0200 : Designate XBB.2.11.1 (C4084T, C9559T, T16521C, USA) with 700 seqs
ec8647d - Cornelius Roemer, 2023-06-11 18:28:27 +0200 : Designate XCG (BA.5.2* and XBB.1, Mexico) with 45 seqs
e6a5751 - Cornelius Roemer, 2023-06-11 18:30:24 +0200 : Designate XBB.1.14.1 (S:N148T, N:A211S, Russia) with 80 seqs
7e54754 - Cornelius Roemer, 2023-06-11 18:32:40 +0200 : Add extra XBB.1.12 designations
e229f29 - Cornelius Roemer, 2023-06-11 18:36:20 +0200 : Designate XBB.2.6.3 (S:T883I, C25587T, Peru) with 80 seqs
d980960 - Cornelius Roemer, 2023-06-11 18:39:19 +0200 : Designate XBB.1.48 (S:L455F, S:F456L (22928C), C2509T, Pakistan) with 15 seqs
e2f7eda - Cornelius Roemer, 2023-06-11 18:43:04 +0200 : Designate XBB.1.13.1 (S:Q564E, S:N856K, Czechia) with 50 seqs
6fc2794 - Cornelius Roemer, 2023-06-11 18:44:53 +0200 : Designate XBB.1.38.1 (S:T883I, Russia) with 80 seqs
bd0a138 - Cornelius Roemer, 2023-06-11 18:46:59 +0200 : Designate XBB.1.4.2 (S:486P, ORf1a:V3595F, Brazil) with 80 seqs
3b3512d - Cornelius Roemer, 2023-06-11 18:53:06 +0200 : Designate XBB.2.12 (S:Q613H (G23401C), C4090T, T24194C, India) with 60 seqs
172fab8 - Cornelius Roemer, 2023-06-12 16:54:37 +0200 : Designate FL.2.3 (ORF1b:K1383R, China, from #2016) with 600 seqs
34d95bc - ciscorucinski, 2023-06-12 23:56:25 +0900 : fixed delimiter irregularity
8ccb7e4 - Cornelius Roemer, 2023-06-12 16:59:08 +0200 : Designate FY.1.2 (S:T572I, ORF1b:P218L, Europe) with 70 seqs
6043842 - Cornelius Roemer, 2023-06-12 17:00:24 +0200 : Designate FY.1.3 (S:E583D, South Korea) with 40 seqs
2e88648 - Cornelius Roemer, 2023-06-12 17:03:46 +0200 : Designate FY.5 (S:478R, Indonesia, from #1965) with 70 seqs
6a1de6c - Cornelius Roemer, 2023-06-12 17:06:36 +0200 : Designate FL.2.2.1 (S:T307I, Indonesia) with 100 seqs
538a81d - ciscorucinski, 2023-06-13 00:08:04 +0900 : fixed values to conform to the standard, full-unaliased notation
456e432 - ciscorucinski, 2023-06-13 00:09:12 +0900 : fixed alias irregularity
92b7e62 - Cornelius Roemer, 2023-06-12 17:14:09 +0200 : Designate XBB.1.16.10 (N:G25D, from #1984) with 120 seqs
c5ee86c - Cornelius Roemer, 2023-06-12 17:16:43 +0200 : Designate FL.16 (S:D215V, C3511T, China, from #2001) with 120 seqs
5d87ef1 - Cornelius Roemer, 2023-06-12 17:23:43 +0200 : Designate GR.1 (XBB.1.5.42.1, S:445S, Vietnam) with 400 seqs
02fd193 - Cornelius Roemer, 2023-06-12 17:29:59 +0200 : Designate GB.2 (XBB.1.5.46.2, S:478R, England/China, from #1891) with 100 seqs
8b5400c - Cornelius Roemer, 2023-06-12 17:33:16 +0200 : Designate GS.1 (XBB.2.3.11.1, S:213D, C4582T, C25075T, Australia, from #2023) with 60 seqs
32fec0a - Angie Hinrichs, 2023-06-12 11:09:05 -0700 : Merge branch 'master' into feature/irregularity/alias_key_values
22b23b1 - Angie Hinrichs, 2023-06-12 11:13:26 -0700 : Merge pull request #2050 from ciscorucinski/feature/irregularity/alias_key_values
121ea19 - Angie Hinrichs, 2023-06-12 11:13:45 -0700 : Merge pull request #2051 from ciscorucinski/feature/fix/fr.1.3
54ee705 - Angie Hinrichs, 2023-06-12 11:15:04 -0700 : Merge pull request #2049 from ciscorucinski/feature/irregularity/lineage_notes_delimiter
e4d4879 - Cornelius Roemer, 2023-06-13 12:27:32 +0200 : Designate XBB.1.5.87 (S:478R, ORF1a:E1633K, ORF1a:M1588K, C9763T, C20946T, Indonesia) with 15 seqs
13ec39a - Cornelius Roemer, 2023-06-13 12:29:44 +0200 : Designate FL.1.6 (S:N481K, S:Q1208H) with 12 seqs
3a48f1e - Cornelius Roemer, 2023-06-14 15:03:38 +0200 : Designate FL.17 (T3898C, C28333T) with 350 seqs
0f9b147 - Cornelius Roemer, 2023-06-14 15:04:56 +0200 : Designate FL.17.1 (S:N74H, South Korea) with 80 seqs
c9a439f - Cornelius Roemer, 2023-06-14 15:06:39 +0200 : Designate FL.17.2 (S:L452R, from sars-cov-2-variants/lineage-proposals#53) with 14 seqs
63a115e - Cornelius Roemer, 2023-06-14 15:09:03 +0200 : Designate XBB.1.16.11 (S:P521, India) with 100 seqs
93f041c - Cornelius Roemer, 2023-06-14 15:13:41 +0200 : Designate XBC.1.6.4 (ORF1a:V1117I, T20286C, Australia) with 80 seqs
714cc20 - Cornelius Roemer, 2023-06-14 15:16:13 +0200 : Designate GT.1 (XBC.1.6.1.1, S:I105V, C28333T, Australia) with 30 seqs
1c07d8a - Christopher Rucinski, 2023-06-20 21:53:48 +0900 : fixed alias irregularity (fixes #2060) (#2062)
df09d9d - Cornelius Roemer, 2023-06-20 15:24:57 +0200 : Designate FU.2.1 (XBB.1.16.1.2.1, S:E619Q, Vietnam) with 61 seqs
bbd9acc - Cornelius Roemer, 2023-06-20 15:29:35 +0200 : Designate GU.1 (XBB.1.5.41.1, S:N481S, USA/Canada) with 160 seqs
dc41211 - Cornelius Roemer, 2023-06-20 15:32:53 +0200 : Designate GV.1 (XBB.1.5.48.1, S:478R) with 90 seqs
3bdba24 - Cornelius Roemer, 2023-06-20 15:37:48 +0200 : Designate FL.4.3 (XBB.1.9.1.4.3, S:A766S, G7393T, Myanmar) with 50 seqs
ed0af50 - InfrPopGen, 2023-06-20 16:46:33 +0100 : Added new lineage EG.5.1.1 from #2020 with 68 new sequence designations, and 0 updated
0fdd904 - InfrPopGen, 2023-06-20 16:48:39 +0100 : Merge pull request #2063 from InfrPopGen/master

pango-designation - pango designation v1.20

Published by AngieHinrichs over 1 year ago

Release notes

fd7e152 - Cornelius Roemer, 2023-03-30 23:44:24 +0200 : Added lineage BN.1.3.10 (ORF1a:Q1918R, C13608T) with 40 designations
0574eba - InfrPopGen, 2023-03-31 15:13:51 +0100 : Added new lineage FK.1 from #1718 with 70 new sequence designations, and 89 updated from CH.1.1 and CH.1.1.17
1688362 - InfrPopGen, 2023-03-31 15:15:09 +0100 : Merge pull request #1831 from InfrPopGen/master
9415f0f - InfrPopGen, 2023-04-03 15:41:57 +0100 : Added new lineage BQ.1.1.73 from #1740 with 47 new sequence designations, and 3 updated from BQ.1.1
1d22dbd - InfrPopGen, 2023-04-03 15:43:04 +0100 : Merge pull request #1840 from InfrPopGen/master
d27266d - InfrPopGen, 2023-04-03 17:17:31 +0100 : Added new recombinant lineage XCA from #1752 with 41 new sequence designations, and 0 updated
6b58f62 - Cornelius Roemer, 2023-04-04 16:38:41 +0200 : Added lineage EG.2 (XBB.1.9.2 with S:478R) with 30 designations
9ac4960 - Cornelius Roemer, 2023-04-04 16:40:33 +0200 : Added lineage XBB.1.31 (S:453F and S:478R) with 17 designations
7f8ba07 - Cornelius Roemer, 2023-04-04 16:51:04 +0200 : Fix bug in designation_helper.py when there are no children
a69145a - Cornelius Roemer, 2023-04-04 16:53:58 +0200 : Added lineage XBB.1.32 (ORF1a:E148D) with 90 designations
21b1e91 - Cornelius Roemer, 2023-04-04 16:59:50 +0200 : Added lineage FL.1 (XBB.1.9.1 with S:701V) with 130 designations
57d6cb4 - Cornelius Roemer, 2023-04-04 17:12:31 +0200 : Added lineage XBB.2.3.3 (S:182N) with 30 designations
d68d647 - Cornelius Roemer, 2023-04-04 17:14:14 +0200 : Added lineage XBB.2.3.4 (S:478Q) with 30 designations
ebe33d3 - Cornelius Roemer, 2023-04-04 17:17:11 +0200 : Added lineage XBB.1.5.40 (S:478I) with 30 designations
b03e914 - Cornelius Roemer, 2023-04-04 17:59:13 +0200 : Added lineage FM.1 (BQ.1.1.53 with S:613H) with 150 designations
a53e555 - Cornelius Roemer, 2023-04-04 18:00:14 +0200 : Added lineage FM.2 (BQ.1.1.53 with S:946R) with 180 designations
55d4ad1 - Cornelius Roemer, 2023-04-04 18:25:22 +0200 : Added lineage FL.2 (XBB.1.9.1 with T4579A) with 600 designations
1270406 - InfrPopGen, 2023-04-05 19:13:56 +0100 : Added new lineage BQ.1.1.74 from #1817 with 70 new sequence designations, and 6 updated from BQ.1.1
adfca1a - InfrPopGen, 2023-04-05 19:15:50 +0100 : Merge pull request #1848 from InfrPopGen/master
c29cc87 - Cornelius Roemer, 2023-04-05 21:32:32 +0200 : Sort lineage_notes.txt correctly
b211300 - Cornelius Roemer, 2023-04-05 21:37:02 +0200 : Added lineage FN.1 (BQ.1.1.74 with S:478R) from #1817 with 70 designations
9d23043 - Cornelius Roemer, 2023-04-07 22:07:36 +0200 : Added lineage EG.1.1 (S:V70F) with 50 designations
280fd9a - Cornelius Roemer, 2023-04-07 22:18:06 +0200 : Added lineage XBB.1.28.1 (S:356T) with 50 designations
71514b7 - Cornelius Roemer, 2023-04-07 22:33:57 +0200 : Added lineage CJ.1.2 (ORF1a:L2609F) with 300 designations
c3a167d - Cornelius Roemer, 2023-04-07 22:36:21 +0200 : Added lineage CJ.1.3 (A261G reversion, G4960A, C14790T) with 300 designations
d42820b - Cornelius Roemer, 2023-04-08 15:13:24 +0200 : Added lineage XBF.1.1 (S:P621S) with 60 designations
85d749a - Cornelius Roemer, 2023-04-08 15:16:08 +0200 : Add lineage XBF.10 (S:M153I) with 16 designations
5e62d57 - InfrPopGen, 2023-04-11 11:45:14 +0100 : Added new lineage FP.1 from #1847 with 29 new sequence designations, and 0 updated
6177686 - InfrPopGen, 2023-04-11 11:46:59 +0100 : Merge pull request #1873 from InfrPopGen/master
7921837 - InfrPopGen, 2023-04-11 13:53:41 +0100 : Added new lineage BF.42 from #1855 with 30 new sequence designations, and 0 updated
7b1f1a3 - InfrPopGen, 2023-04-11 13:55:11 +0100 : Merge pull request #1874 from InfrPopGen/master
af07cc3 - InfrPopGen, 2023-04-11 16:08:46 +0100 : Added new lineage CH.1.1.23 from #1862 with 21 new sequence designations, and 3 updated from CH.1.1
8b1904d - InfrPopGen, 2023-04-11 16:09:52 +0100 : Merge pull request #1875 from InfrPopGen/master
e236502 - InfrPopGen, 2023-04-12 11:34:16 +0100 : Added new lineage XBB.2.3.5 from #1846 with 5 new sequence designations, and 0 updated
67245eb - InfrPopGen, 2023-04-12 11:35:15 +0100 : Merge pull request #1880 from InfrPopGen/master
95a25bd - InfrPopGen, 2023-04-13 16:00:49 +0100 : Added new lineage FK.1.1 from #1881 with 0 new sequence designations, and 18 updated from FK.1
52e606d - InfrPopGen, 2023-04-13 16:01:52 +0100 : Merge pull request #1883 from InfrPopGen/master
2797d5f - InfrPopGen, 2023-04-14 14:24:28 +0100 : Added new recombinant lineage XCB from #1668 with 46 new sequence designations, and 0 updated
64db020 - InfrPopGen, 2023-04-14 14:26:07 +0100 : Merge pull request #1887 from InfrPopGen/master
4e851b1 - Cornelius Roemer, 2023-04-17 18:51:31 +0200 : Minor lineage notes improvements
342920d - InfrPopGen, 2023-04-17 19:33:11 +0100 : Added new lineage FQ.1 from #1797 with 40 new sequence designations, and 0 updated
a90bc6b - InfrPopGen, 2023-04-17 19:34:38 +0100 : Merge pull request #1905 from InfrPopGen/master
223d79a - InfrPopGen, 2023-04-18 14:39:54 +0100 : Added new lineage XBB.1.33 from #1879 with 18 new sequence designations, and 0 updated
7066483 - InfrPopGen, 2023-04-18 14:41:15 +0100 : Merge pull request #1912 from InfrPopGen/master
45c0707 - Cornelius Roemer, 2023-04-19 16:24:19 +0200 : Designate lineage XBL.1 (S:V635I) with 50 designations
09f25aa - Cornelius Roemer, 2023-04-19 16:31:16 +0200 : Designate lineages XBL.2 and XBL.3, add extra strains for XBL
b0f4701 - Cornelius Roemer, 2023-04-19 16:52:03 +0200 : Designate lineage XBB.2.3.6 (N:T166I) with 158 sequences
c6afc3c - Cornelius Roemer, 2023-04-19 16:59:23 +0200 : Designate lineage XBB.2.3.7 (ORF1a:T4087I) with 60 designations
7ff92cc - Cornelius Roemer, 2023-04-19 17:02:20 +0200 : Add extra XBB.2.3 to lineages.csv
99ba344 - InfrPopGen, 2023-04-20 19:46:25 +0100 : Added new lineage XBB.1.34 from #1621 with 33 new sequence designations, and 0 updated
ba825c7 - InfrPopGen, 2023-04-20 19:47:30 +0100 : Merge pull request #1926 from InfrPopGen/master
8e6f6dd - InfrPopGen, 2023-04-21 14:12:44 +0100 : Added new lineage FR.1 from #1814 with 244 new sequence designations, and 4 updated from BN.1.2.3
b5780a3 - InfrPopGen, 2023-04-21 14:14:02 +0100 : Merge pull request #1934 from InfrPopGen/master
0ab8a0b - InfrPopGen, 2023-04-21 16:08:47 +0100 : Added new lineage FS.1 from #1816 with 111 new sequence designations, and 24 updated from CH.1.1.12
a2da67c - InfrPopGen, 2023-04-21 16:10:14 +0100 : Merge pull request #1935 from InfrPopGen/master
d6f82ca - InfrPopGen, 2023-04-21 16:12:17 +0100 : Added missing lineages.csv updates for FS.1 from #1816 with 111 new sequence designations, and 24 updated from CH.1.1.12
441061d - InfrPopGen, 2023-04-21 16:14:18 +0100 : Merge pull request #1936 from InfrPopGen/master
f2fa07d - Cornelius Roemer, 2023-04-22 17:42:56 +0200 : Add recombinant XCC (CH.1.1.1/XBB.1.9.1) with 30 designations
c3a7f99 - Cornelius Roemer, 2023-04-22 18:17:57 +0200 : Designate EG.3 (XBB.1.9.2 with ORF1a:L2278F on N:L219F)
8289cb0 - Cornelius Roemer, 2023-04-22 18:20:35 +0200 : Added lineage EG.1.2 (ORF7b:H42Y) with 600 designations
0431660 - Cornelius Roemer, 2023-04-22 18:22:06 +0200 : Added lineage EG.1.3 (C3784T, A6613G) with 500 designations
a03b0dc - Cornelius Roemer, 2023-04-22 18:24:23 +0200 : Added lineage EG.1.4 (ORF1a:S2500F) with 400 designations
242699e - Cornelius Roemer, 2023-04-22 18:32:31 +0200 : Added lineage EG.4 (XBB.1.9.2 with C28651T) with 400 designations
cd5580d - Cornelius Roemer, 2023-04-22 18:37:06 +0200 : Added lineage EG.5 (S:F456L) with 12 designations
2d736bc - Cornelius Roemer, 2023-04-22 18:46:19 +0200 : Added lineage FL.3 (XBB.1.9.1 with T1753C) with 900 designations
90a2ec2 - Cornelius Roemer, 2023-04-22 18:48:48 +0200 : Added lineage FL.4 (XBB.1.9.1 with ORF1b:V1092F) with 400 designations
721729e - Cornelius Roemer, 2023-04-22 18:53:04 +0200 : Added lineage FL.5 (XBB.1.9.1 with N:T362I) with 200 designations
416a59a - Cornelius Roemer, 2023-04-22 19:48:43 +0200 : Added lineage FK.1.2 (ORF1a:L384F, ORF1a:R550H) with 300 designations
85e7c0b - Cornelius Roemer, 2023-04-22 21:00:18 +0200 : Added lineage FT.1 (XBB.1.5.39 with S:I197V) with 300 designations
7820a81 - Cornelius Roemer, 2023-04-22 21:45:29 +0200 : Added lineage XAY.2.3 (ORF1a:A131V) with 150 designations
62fec83 - Cornelius Roemer, 2023-04-22 21:50:59 +0200 : Added lineage XAY.1.1.2 (C14838T) with 35 designations
b119264 - Cornelius Roemer, 2023-04-22 21:55:06 +0200 : Added lineage XAY.1.1.3 (C6040T, C8290T, T15153C) with 50 designations
c93a471 - Cornelius Roemer, 2023-04-22 22:39:41 +0200 : Added lineage XBB.1.16.2 (ORF3a:V13L, ORF1a:P926H) with 200 designations
b75a5d4 - Cornelius Roemer, 2023-04-22 22:42:38 +0200 : Added lineage XBB.1.16.3 (A2893C) with 60 designations
4d852e2 - Cornelius Roemer, 2023-04-22 22:47:06 +0200 : Added lineage FU.1 (XBB.1.16.1 with T3802C) with 150 designations
d0f51a1 - Cornelius Roemer, 2023-04-22 22:49:39 +0200 : Added lineage FU.2 (XBB.1.16.1 with C8692T) with 100 designations
ee79541 - Cornelius Roemer, 2023-04-22 23:09:51 +0200 : Added lineage XBB.1.5.41 (S:V772I, S:P521T) from #1941
81bb097 - Cornelius Roemer, 2023-04-22 23:31:31 +0200 : Added lineage XBB.1.5.42 (S:E281D) with 100 designations from #1933
befe4e2 - Cornelius Roemer, 2023-04-22 23:53:13 +0200 : Added lineage FL.2.1 (C10228T) with 200 designations
68615bb - Cornelius Roemer, 2023-04-22 23:56:39 +0200 : Added lineage FL.2.2 (S:478R) with 15 designations from #1927
b622915 - Cornelius Roemer, 2023-04-23 18:09:33 +0200 : tooling: add --keep-first option to add_to_lineages.sh
052d3f4 - Cornelius Roemer, 2023-04-23 18:10:15 +0200 : Add extra XBC.1.6 designations
6501158 - Cornelius Roemer, 2023-04-23 18:13:07 +0200 : Added lineage XBC.1.6.1 (ORF1b:N498I) with 80 designations
6b0d4fd - Cornelius Roemer, 2023-04-23 18:14:28 +0200 : Added lineage XBC.1.6.2 (ORF1a:D827N) with 35 designations
0cb2b59 - Cornelius Roemer, 2023-04-23 18:16:42 +0200 : Added lineage XBC.1.6.3 (N:A173V) with 20 designations
d59c7ed - Cornelius Roemer, 2023-04-23 19:04:21 +0200 : Added lineage XBB.1.5.43 (C18501T) with 200 designations
5863f22 - Cornelius Roemer, 2023-04-23 19:19:00 +0200 : Added lineage XBB.1.35 (ORF1a:V89A) with 100 designations
a32c539 - Cornelius Roemer, 2023-04-23 19:31:41 +0200 : Added lineage XBB.1.5.44 (S:K356T, S:T572I) from #1907
aeefa45 - Cornelius Roemer, 2023-04-23 21:48:20 +0200 : Added lineage XBB.1.5.45 (S:478R, C27425T, G28079T) with 60 designations
9c277b9 - Cornelius Roemer, 2023-04-23 22:01:11 +0200 : Added lineage XBB.1.5.46 (C5770T, C15279T) with 1.5k designatons
5fee394 - Cornelius Roemer, 2023-04-23 22:40:14 +0200 : Fix typos in lineage_notes.txt, resolves #1943
b33756e - Cornelius Roemer, 2023-04-23 22:50:35 +0200 : Change defining mutation for XBC.1.6.1 from ORF1b:N498I to ORF8:P36L
c0d5476 - Cornelius Roemer, 2023-04-24 11:30:41 +0200 : Fix typo in lineages.csv XBC.1.5.43 -> XBB.1.5.43
42db49d - Cornelius Roemer, 2023-04-24 11:32:02 +0200 : Fix typo in lineages.csv XBB.1.6.1 -> XBC.1.6.1
6df45ef - InfrPopGen, 2023-04-24 16:10:29 +0100 : Added new lineage XBB.1.36 from #1781 with 26 new sequence designations, and 18 updated from XBB.1
9da8681 - InfrPopGen, 2023-04-24 16:11:56 +0100 : Merge pull request #1952 from InfrPopGen/master
e37c661 - Cornelius Roemer, 2023-04-24 22:46:56 +0200 : Add lineage XBB.8.1 (S:486P) with 20 designations
d782a1b - Cornelius Roemer, 2023-04-24 23:03:59 +0200 : Add lineage XBB.9 (N:T49I) with 600 designations
a1a5f9f - Cornelius Roemer, 2023-04-24 23:42:50 +0200 : Add lineage XBB.3.4 (S:E990D) with 50 designations
a3138ef - Cornelius Roemer, 2023-04-25 17:10:35 +0200 : Add lineage XBB.1.5.47 (C1912T) with 800 designations
98cc855 - Cornelius Roemer, 2023-04-25 17:14:56 +0200 : Add lineage XBB.1.5.48 (A24730T) with 1800 designations
4d10905 - Cornelius Roemer, 2023-04-25 17:17:29 +0200 : Add lineage XBB.1.5.49 (T6886C) with 1400 designations
0cdd298 - Cornelius Roemer, 2023-04-26 02:22:29 +0200 : Add lineage EU.1.1.1 (C21646T) with 200 designations
ae0c152 - Cornelius Roemer, 2023-04-26 02:27:37 +0200 : Add lineage XBB.1.5.50 (S:621S, N:T49I) with 200 designations
098a089 - Cornelius Roemer, 2023-04-26 02:29:15 +0200 : Add lineage XBB.1.5.51 (ORF1a:D3009A) with 1000 designations
c2b6da2 - Cornelius Roemer, 2023-04-26 02:33:25 +0200 : Add lineage XBB.1.5.52 (C3589T) with 1000 designations
8687b59 - Cornelius Roemer, 2023-04-26 02:56:01 +0200 : Add lineage FV.1 (CM.8.1.1 with S:346T) with 11 designations
c5a06b0 - Cornelius Roemer, 2023-04-26 03:02:04 +0200 : Add lineage XBB.1.5.53 (S:150I,582F,403K) with 7 designations
33cf553 - Cornelius Roemer, 2023-04-26 03:05:10 +0200 : Add extra CH.1.1.20 designations
d0be24c - Cornelius Roemer, 2023-04-26 03:08:55 +0200 : Add lineage XBB.1.9.6 (S:403K,S:570T) with 10 designations
e97f9fb - InfrPopGen, 2023-04-28 16:24:50 +0100 : Added new lineage BQ.1.2.2 from #1861 with 7 new sequence designations, and 0 updated
7174502 - InfrPopGen, 2023-04-28 16:26:23 +0100 : Merge pull request #1971 from InfrPopGen/master
ff3cd79 - Cornelius Roemer, 2023-05-01 16:57:20 +0200 : Added lineage FW.1 (XBB.1.28.1 with S:A701V) with 20 designations
d7bfc16 - Cornelius Roemer, 2023-05-01 17:00:28 +0200 : Added lineage FW.2 (XBB.1.28.1 with ORF1a:G2258C) with 19 designations
da6e07f - Cornelius Roemer, 2023-05-01 17:58:13 +0200 : Added lineage XBB.1.5.54 (C14358T,C20016T,C29311T) with 70 designations
96aeb01 - Cornelius Roemer, 2023-05-01 19:04:00 +0200 : Added lineage EK.4 (S:Q675K) with 70 designations
5d8ba95 - Cornelius Roemer, 2023-05-01 22:36:27 +0200 : Added lineage XBB.2.3.8 (C2013T, T16389C, S:478R) with 45 designations from #1866
a6a6de0 - Cornelius Roemer, 2023-05-03 10:20:09 +0200 : Add extra CH.1.1.20 designations
8561bd4 - Cornelius Roemer, 2023-05-03 10:40:32 +0200 : Add lineage FD.3 (XBB.1.5.15 with S:A348S) with 80 designations
3064fad - Cornelius Roemer, 2023-05-03 10:47:46 +0200 : Add lineage XBB.1.5.55 (ORF1a:T3356I) with 400 designations
2d38716 - Cornelius Roemer, 2023-05-03 11:08:56 +0200 : Add lineage FL.6 (XBB.1.9.1 with ORF1a:I849V) with 20 designations
e97a0a0 - rquiroga7, 2023-05-04 12:30:24 -0300 : Update lineage_notes.txt (#1964)
009c571 - Cornelius Roemer, 2023-05-04 17:39:36 +0200 : Add lineage XBB.2.3.9 (S:S98F) with 50 designations
626adfa - Cornelius Roemer, 2023-05-04 17:41:51 +0200 : Add lineage XBB.2.3.10 (T5947C) with 60 designations
85d372d - Cornelius Roemer, 2023-05-04 19:00:41 +0200 : Add lineage FY.1 (XBB.1.22.1 with ORF1b:D1782N) with 250 designations
e6c4116 - Cornelius Roemer, 2023-05-04 19:03:08 +0200 : Add lineage FY.2 (XBB.1.22.1 with S:I197T) with 50 designations
0e64782 - Cornelius Roemer, 2023-05-04 19:09:38 +0200 : Add lineage FY.3 (XBB.1.22.1 with ORF1a:E750K) with 25 designations
64bd958 - Cornelius Roemer, 2023-05-04 19:15:11 +0200 : Add lineage FY.4 (XBB.1.22.1 with S:Y451H) with 20 designations
b3bc595 - Cornelius Roemer, 2023-05-05 09:25:15 +0200 : Add lineage FZ.1 (XBB.1.5.47 with S:E583D) with 250 designations
37ce928 - Cornelius Roemer, 2023-05-05 09:26:43 +0200 : Add lineage FZ.1.1 (S:L858I) with 150 designations
184cb5a - Cornelius Roemer, 2023-05-05 09:29:10 +0200 : Add lineage FZ.2 (XBB.1.5.47 with S:836R) with 90 designations
e08093d - Cornelius Roemer, 2023-05-05 09:31:50 +0200 : Add lineage XBB.1.5.56 (S:A852S) with 300 designations
8176b5d - Cornelius Roemer, 2023-05-05 09:38:08 +0200 : Add lineage XBB.1.16.4 (S:T678I) with 80 designations
1d296dd - Cornelius Roemer, 2023-05-05 10:33:30 +0200 : Add extra XBL(.1/.2/.3) designations
c98c201 - Cornelius Roemer, 2023-05-05 10:52:45 +0200 : Designate XBB.1.5.47 (A20379G,C28312T, pre-T17124C) with 400 designations
294eb72 - Cornelius Roemer, 2023-05-05 11:01:17 +0200 : Update XBL info after XBB.1.5.57 designation
2259217 - Cornelius Roemer, 2023-05-05 15:27:47 +0200 : Fix lineages.csv: XBB.1.5.47 -> XBB.1.5.57
e56d05f - Cornelius Roemer, 2023-05-05 22:25:15 +0200 : Designated lineage FE.1.1 (ORF8:S67F) with 100 designations
1c368f3 - Cornelius Roemer, 2023-05-05 22:38:10 +0200 : Designate FE.1.2 (A5488G) with 180 sequences, add extra FE.1
6ef4894 - Cornelius Roemer, 2023-05-06 11:55:57 +0200 : Designate GA.1 (XBB.1.17.1 with ORF1a:G728C) with 80 seqs
f97dd6d - Cornelius Roemer, 2023-05-06 11:58:49 +0200 : Designate GA.2 (XBB.1.17.1 with ORF3a:I179F) with 175 seqs
8df423b - Cornelius Roemer, 2023-05-06 12:02:02 +0200 : Designate GA.3 (XBB.1.17.1 with ORF1b:A186V) with 80 seqs
4297919 - Cornelius Roemer, 2023-05-06 12:12:20 +0200 : Designate CH.1.1.24 (T931C,T6676C) with 1100 seqs
299e4f3 - Cornelius Roemer, 2023-05-06 12:14:52 +0200 : Designate CH.1.1.25 (ORF1a:S330L,ORF1a:P4197S) with 600 seqs
4348025 - Cornelius Roemer, 2023-05-06 12:16:26 +0200 : Designate CH.1.1.26 (C29296T) with 500 seqs
1eab77f - Cornelius Roemer, 2023-05-06 12:24:57 +0200 : Designate DV.6 (CH.1.1.1 with T15591C) with 1400 seqs
b4eee09 - Cornelius Roemer, 2023-05-06 12:30:22 +0200 : Designate CH.1.1.27 (ORF1a:S538L) with 400 seqs
03d80ac - Cornelius Roemer, 2023-05-06 12:59:17 +0200 : Designate XBB.1.5.58 (S:S704L, Guinea) with 30 seqs from #1860
d250f1c - Cornelius Roemer, 2023-05-06 13:03:11 +0200 : Designate XBB.1.5.59 (S:F456L, ORF1a:S2822P) from #1949 with 100 seqs
ec25a3c - Cornelius Roemer, 2023-05-06 13:16:00 +0200 : Add XBB.1.5.60 (S:M177I, ORF1a:T2106I, S:Q146K, Netherlands/Germany) with 300 seqs
37e06ca - Cornelius Roemer, 2023-05-06 13:31:24 +0200 : Add XBB.1.5.61 (T11536C, USA) with 500 seqs
817bf51 - Cornelius Roemer, 2023-05-06 13:32:44 +0200 : Add XBB.1.5.62 (C29095T) with 600 seqs
459eb3a - Cornelius Roemer, 2023-05-06 13:35:13 +0200 : Add XBB.1.5.63 (C346T, Germany/Mauritius) with 900 seqs
d558bca - Cornelius Roemer, 2023-05-06 13:36:52 +0200 : Add XBB.1.5.64 (C29708T) with 1300 designations
723e02a - Cornelius Roemer, 2023-05-06 13:40:25 +0200 : Designate XBB.1.5.65 (C583T, Germany) with 750 seqs
1d49a86 - Cornelius Roemer, 2023-05-06 13:42:12 +0200 : Designate XBB.1.5.66 (ORF1a:G519S, US) with 600 seqs
4393d6f - Cornelius Roemer, 2023-05-06 13:44:16 +0200 : Designate XBB.1.5.67 (C21691T, USA) with 1300 seqs
7eb4196 - Cornelius Roemer, 2023-05-06 13:52:44 +0200 : Designate GB.1 (XBB.1.5.46. with S:L518V, France) from #1969 with 200 seqs
b810a1c - Cornelius Roemer, 2023-05-06 15:53:41 +0200 : Designate XBB.1.16.5 (T9991C,C16332T) from #1983 with 70 seqs
12ce0af - Cornelius Roemer, 2023-05-06 18:53:16 +0200 : Designate FD.4 (XBB.1.5.15 with ORF1a:L4191F) with 1000 seqs
a127e3b - Cornelius Roemer, 2023-05-06 20:03:13 +0200 : Designate FL.7 (XBB.1.9.1 with S:T51I) with 100 seqs
90ada11 - Cornelius Roemer, 2023-05-06 20:10:41 +0200 : Designate XBB.1.5.68 (S:P521T) with 180 seqs
c2a6a7e - Cornelius Roemer, 2023-05-06 20:24:17 +0200 : Designate XBB.1.37 (A5371G) with 300 seqs
88eccd0 - Cornelius Roemer, 2023-05-06 20:26:20 +0200 : Designate XBB.1.37.1 (S:486P) with 140 seqs, from #1929
30abaef - Cornelius Roemer, 2023-05-07 09:18:52 +0200 : Designate XBB.1.5.69 (ORF1a:V2943I,C22513T, USA) with 400 seqs
511cf79 - Cornelius Roemer, 2023-05-07 09:25:57 +0200 : Designate XBB.1.16.6 (S:F456L, A12397G, USA/Canada/China) with 7 seqs
15e2b10 - Cornelius Roemer, 2023-05-07 09:30:06 +0200 : Designate EG.5.1 (S:Q52H) with 25 seqs
23a9f30 - Cornelius Roemer, 2023-05-07 09:37:38 +0200 : Desginate GC.1 (XBB.1.5.21 with S:T323I) with 70 seqs
96cc31b - Cornelius Roemer, 2023-05-07 09:39:15 +0200 : Designate GC.2 (XBB.1.5.21 with S:A352S) with 60 seqs
a34b4ce - Cornelius Roemer, 2023-05-07 09:51:06 +0200 : Designate FL.8 (XBB.1.9.1.8, ORF3a:I62F) with 250 seqs
5ff879e - Cornelius Roemer, 2023-05-07 09:53:01 +0200 : Designate FL.9 (XBB.1.9.1.9, T29691C, England) with 250 seqs
27ae403 - Cornelius Roemer, 2023-05-07 09:55:16 +0200 : Designate FL.10 (XBB.1.9.1.10, ORf1a:C657Y) with 200 seqs
bc4162b - Cornelius Roemer, 2023-05-07 09:57:41 +0200 : Designate FL.11 (XBB.1.9.1.11, ORF1a:L394F, France/French Guiana), from #1947, 150 seqs
762113d - Cornelius Roemer, 2023-05-07 10:55:45 +0200 : Designated CH.1.1.28 (ORF1b:V1092F, Europe) with 450 seqs
b094ce2 - Cornelius Roemer, 2023-05-07 11:04:22 +0200 : Designate FL.3.1 (ORF1a:T2264I, England) with 800 seqs
87c1375 - Cornelius Roemer, 2023-05-07 11:06:41 +0200 : Designate FL.3.2 (T8830C, England/Spain) with 480 seqs
bee75ad - Cornelius Roemer, 2023-05-07 11:08:59 +0200 : Designate FL.3.3 (ORF1a:A4285V,ORF1a:V2998I,ORF1a:E772K, England) with 300 seqs
5e164a4 - Cornelius Roemer, 2023-05-07 11:10:50 +0200 : Designate FL.3.4 (G10642C, T26232C, England) with 150 seqs
4f1b8ac - Cornelius Roemer, 2023-05-07 11:15:22 +0200 : Designate XBB.1.24.1 (S:L518Q, Singapore) with 60 seqs
9b5d6e3 - Cornelius Roemer, 2023-05-07 11:17:40 +0200 : Designate XBB.1.24.2 (S:R158S, after ORF1a:K261N, N:A35T, Singapore/Malaysia) with 20 seqs
e95e41f - Cornelius Roemer, 2023-05-07 11:19:17 +0200 : Designate XBB.1.24.3 (S:S256L, after ORF1a:K261N, N:A35T, Malaysia/Japan) with 15 seqs
715eb73 - Cornelius Roemer, 2023-05-07 11:59:54 +0200 : Designate XBB.1.38 (S:T732I, Russia) with 170 seqs
20773b6 - Cornelius Roemer, 2023-05-07 12:05:13 +0200 : Designate GD.1 (=XBB.1.9.3.1, S:Y453F, Mexico/USA), from #1897, 20 seqs
d4b3c18 - Cornelius Roemer, 2023-05-07 12:07:30 +0200 : Designate XBB.1.39 (ORF1a:V2866M, Singapore/Malaysia) with 80 seqs
23aa9e6 - Cornelius Roemer, 2023-05-07 12:14:37 +0200 : Designate XBB.1.40 (S:Y453F, ORF1a:G519S, ORF1a:L2609F, ORF3a:P104S, Malaysia) with 9 seqs
cfd0a4e - Cornelius Roemer, 2023-05-07 12:20:38 +0200 : Designate GE.1 (Alias of XBB.2.3.10.1, S:K478R), from #1866, 25 seqs
687d94c - Cornelius Roemer, 2023-05-07 12:26:03 +0200 : Designate XBB.2.3.11 (S:K478R, India), from #1866, 75 seqs
be12729 - Cornelius Roemer, 2023-05-07 12:29:28 +0200 : Designate FL.1.1 (ORF1b:Q2635P, USA/Australia) with 60 seqs
7400c8b - Cornelius Roemer, 2023-05-07 12:31:29 +0200 : Designate FL.1.2 (ORF1a:T4311I, South Korea/Italy/Spain) with 60 seqs
7c4ea68 - Cornelius Roemer, 2023-05-07 12:33:49 +0200 : Designate FL.1.3 (ORF1a:T1881I, ORF1b:M606I, South Korea) with 70 seqs
0ce0196 - Cornelius Roemer, 2023-05-07 17:14:35 +0200 : Designate XBB.3.5 (ORF1a:T4083M, Mozambique) with 100 seqs
f05aef5 - Cornelius Roemer, 2023-05-07 17:19:04 +0200 : Designate BN.1.2.5 (C3241T, C16833T, G22225A, South Korea) with 1000 seqs
8f32d19 - Cornelius Roemer, 2023-05-07 17:22:50 +0200 : Designate FR.2 (BN.1.2.3 with ORF1a:Y1920H, ORF1b:I1799S, South Korea) with 600 seqs
197228d - Cornelius Roemer, 2023-05-07 17:25:36 +0200 : Designate BN.1.2.6 (ORF1b:A1326S, South Korea) with 400 seqs
51183ea - Cornelius Roemer, 2023-05-07 17:29:20 +0200 : Designate EJ.3 (BN.1.3.8 with C2509T, C3241T, C17004T, South Korea) with 250 seqs
9bf47a8 - Cornelius Roemer, 2023-05-07 17:35:01 +0200 : Designate BN.1.3.11 (ORF1a:T568I, ORF1a:V1211F, South Korea) with 100 seqs
531f5d0 - Cornelius Roemer, 2023-05-07 18:27:31 +0200 : Designate BQ.1.2.3 (E:V24L, Canada) with 2k seqs
d717307 - Cornelius Roemer, 2023-05-07 18:31:13 +0200 : Designate BQ.1.3.1 (C2509T, Spain) with 2k seqs
7528bf2 - Cornelius Roemer, 2023-05-07 18:32:22 +0200 : Designate BQ.1.3.2 (ORF1a:L1853F, USA) with 2k seqs
ff1db70 - Cornelius Roemer, 2023-05-07 18:36:39 +0200 : Designate BQ.1.33 (S:F157L, S:K147I) with 150 seqs
d7197f6 - Cornelius Roemer, 2023-05-07 18:39:40 +0200 : Designate DN.2 (BQ.1.1.5 with ORF1b:D2351N, USA) with 1200 seqs
27102c8 - Cornelius Roemer, 2023-05-07 18:42:35 +0200 : Designate DN.3 (ORF1a:V1025L) and DN.3.1 (S:K182E) with 200/60 seqs
189d402 - Cornelius Roemer, 2023-05-07 21:49:29 +0200 : Fix lineage notes for XBB.1.24.3
cb64a77 - Cornelius Roemer, 2023-05-08 11:17:40 +0200 : Designate XBB.1.32.1 (S:Y453F, ORF1a:L642F, ORF1b:L2497I, Philippines/Thailand) with 10 seqs
876aa63 - Cornelius Roemer, 2023-05-08 11:32:28 +0200 : Designate FL.12 (ORF1a:C2210F) with 400 seqs
b934e8b - Cornelius Roemer, 2023-05-09 10:49:07 +0200 : Add C23707T as lineage defining mutation to FL.9
0bb00e9 - Cornelius Roemer, 2023-05-09 15:08:18 +0200 : Narrow XBB.1.5.64 adding G8137A as defining, 200 seqs
82f7c20 - Cornelius Roemer, 2023-05-09 15:14:41 +0200 : Fix typo in lineage notes: ORF1a:L349F defines FL.11
22b4222 - InfrPopGen, 2023-05-11 11:21:25 +0100 : Added new lineage XBB.2.9 from #1877 with 40 new sequence designations, and 6 updated from XBB.2
5c03dbe - InfrPopGen, 2023-05-11 11:23:09 +0100 : Merge pull request #1992 from InfrPopGen/master

pango-designation - pango designation v1.19

Published by aineniamh over 1 year ago

Release notes

e531938 - Cornelius Roemer, Wed Mar 29 21:10:18 2023 +0200 : Added lineage FJ.1 (CH.1.1.19 with ORF1a:A1204V) with 180 designations
c78e249 - InfrPopGen, Wed Mar 29 15:42:30 2023 +0100 : Merge pull request #1818 from InfrPopGen/master
2a62dcf - InfrPopGen, Wed Mar 29 15:40:59 2023 +0100 : Added new lineage CH.1.1.22 from #1670 with 7 new sequence designations, and 9 updated from CH.1.1
f692d76 - Cornelius Roemer, Wed Mar 29 01:36:55 2023 +0200 : Added CH.1.1.21 (S:N481Y) from #1799, 50 designations
c578f47 - Cornelius Roemer, Tue Mar 28 23:30:31 2023 +0200 : fix: move "taxon,lineage" back to top
19170f5 - Angie Hinrichs, Tue Mar 28 14:19:23 2023 -0700 : #1776 was for XBB.2.3.2 not XBB.2.3, thanks @Over-There-Is, fixes #1803.
5cf9cd0 - InfrPopGen, Tue Mar 28 16:45:08 2023 +0100 : Merge pull request #1815 from InfrPopGen/master
bac15e0 - InfrPopGen, Tue Mar 28 16:42:35 2023 +0100 : Added new recombinant lineage XBZ from #1666 with 0 new sequence designations, and 238 updated designations
4a522cb - Angie Hinrichs, Mon Mar 27 11:35:36 2023 -0700 : Added 995 designations for the part of BA.5.1.15 that doesn't have C10183T (#1039). Many were previously designated BA.5.1; 20 were previously designated BA.5.1.22, 8 were BA.5.1.3 and 2 were BA.5.1.25 due to having both the defining mutations for those respective lineages and the defining mutation for BA.5.1.15 (C10790T).
385e78d - Cornelius Roemer, Mon Mar 27 04:43:37 2023 +0200 : Added lineage XBB.1.5.39 (ORF1a:M3684T) with 800 designations
37fb661 - Cornelius Roemer, Mon Mar 27 04:40:58 2023 +0200 : Added lineage FH.1 (XBB.1.5.17 with S:T883I) with 140 designations
773437b - Cornelius Roemer, Mon Mar 27 04:36:54 2023 +0200 : Added lineage XBB.1.5.38 (S:I666V, ORF1a:T403I) with 150 designations
7bfbd46 - Cornelius Roemer, Mon Mar 27 04:24:15 2023 +0200 : Added lineage FD.2 (XBB.1.5.15 with S:Q146K) from #1600 with 1000 designations
1d92447 - Cornelius Roemer, Mon Mar 27 04:21:09 2023 +0200 : Added lineage XBB.1.5.37 (S:K1045R) with 300 designations
ea6f34a - Cornelius Roemer, Fri Mar 24 21:11:20 2023 +0100 : Fix typo in lineage notes for mutation of CM.8.1.4 (thanks @FedeGueli)
411700b - Cornelius Roemer, Fri Mar 24 21:06:57 2023 +0100 : Added related issues to lineage notes, thanks @FedeGueli
1ee797a - Cornelius Roemer, Fri Mar 24 21:02:10 2023 +0100 : Add helper scripts to make designation more ergonomic
6dae4b8 - Cornelius Roemer, Fri Mar 24 20:56:54 2023 +0100 : Added lineage BF.5.5 (S:K147N) with 250 designations
0225b01 - Cornelius Roemer, Fri Mar 24 20:53:31 2023 +0100 : Added lineage XBB.2.7.1 (S:Y453F, S:K478Q, Singapore, #1725)
d6fed05 - Cornelius Roemer, Fri Mar 24 20:46:29 2023 +0100 : Added lineage XBB.2.8 (C6968T) with 250 designations
0ce4960 - Cornelius Roemer, Fri Mar 24 20:43:20 2023 +0100 : Added lineage DN.1.1.4 (S:N481S) with 70 designations
1ea0850 - Cornelius Roemer, Fri Mar 24 20:41:37 2023 +0100 : Added lineage DN.1.1.3 (S:S704L) with 100 designations
19d4246 - Cornelius Roemer, Fri Mar 24 19:26:18 2023 +0100 : Added lineage CM.8.1.4 (ORF1a:N2890D) with 86 designations
8ab5b25 - Cornelius Roemer, Fri Mar 24 19:23:35 2023 +0100 : Added lineage CM.8.1.3 (S:Y1272H) with 48 designations
e3c981f - Cornelius Roemer, Fri Mar 24 19:20:30 2023 +0100 : Added lineage CH.1.1.20 (S:T299I, S:R403K, S:D1165G) from #1736
6f71f0c - Cornelius Roemer, Fri Mar 24 19:17:22 2023 +0100 : Added lineage CH.1.1.19 (C2773) with 450 designations
0947ed6 - Cornelius Roemer, Fri Mar 24 19:15:38 2023 +0100 : Added lineage FG.3 (S:I934V) with 75 designations
1cd5d3b - Cornelius Roemer, Fri Mar 24 19:14:29 2023 +0100 : Added lineage FG.2 (S:D178N) with 80 designations
a8a99b5 - Cornelius Roemer, Fri Mar 24 19:12:58 2023 +0100 : Added lineage FG.1 (XBB.1.5.16.1 with S:T284I, S:R403K, S:L513F) from #1751
fb4e8b2 - Cornelius Roemer, Fri Mar 24 19:09:27 2023 +0100 : Added lineage XBF.9 (ORF1b:S1003G) with 90 designations
3dd84ab - Cornelius Roemer, Fri Mar 24 19:06:08 2023 +0100 : Added lineage BQ.1.26.2 (S:F157L) with 90 designations
73062bf - Cornelius Roemer, Fri Mar 24 19:01:46 2023 +0100 : Added lineage BL.1.5 (S:A475V) with 120 designations
fa0fb80 - Cornelius Roemer, Fri Mar 24 18:56:09 2023 +0100 : Added lineage XBB.1.5.36 (C9442T) with 240 designations
2a3dec1 - Cornelius Roemer, Fri Mar 24 18:53:47 2023 +0100 : Added lineage XBB.1.5.35 (S:N978S, USA, from #1699) with 400 designations
8032c82 - Cornelius Roemer, Fri Mar 24 18:46:07 2023 +0100 : Added lineage XBB.1.30 (ORF1b:K2557R) with 150 designations
086bc4f - Cornelius Roemer, Fri Mar 24 18:39:38 2023 +0100 : Added lineage XBB.1.5.34 (ORF1a:T1754I) with 430 designations
94ecd67 - Cornelius Roemer, Fri Mar 24 18:36:59 2023 +0100 : Added lineage XBB.1.29 (ORF1a:L3829F, S:A292S) with 50 designations
5fdd9b0 - Cornelius Roemer, Fri Mar 24 18:33:34 2023 +0100 : Added lineage XBB.1.28 (S:R403K) with 13 designations
884b1f7 - Cornelius Roemer, Fri Mar 24 18:02:06 2023 +0100 : Added lineage CH.1.1.18 (S:K187T) with 150 designations, from #1747
4267069 - Cornelius Roemer, Fri Mar 24 17:58:40 2023 +0100 : Added lineage XBB.2.3 (S:G184V, ORF1a:R2159W) with 50 designations from #1776
c49a12a - Cornelius Roemer, Fri Mar 24 17:57:05 2023 +0100 : Added lineage XBB.2.3.1 (S:D80Y) with 80 designations
b4fb9dd - Cornelius Roemer, Fri Mar 24 17:52:32 2023 +0100 : Added lineages XBB.1.5.31, XBB.1.5.32, XBB.1.5.33
cdcebd4 - Cornelius Roemer, Thu Mar 23 23:42:16 2023 +0100 : Added lineage BN.1.3.9 (S:V83F) with 70 designations
d39dc6f - InfrPopGen, Thu Mar 23 19:22:10 2023 +0000 : Merge pull request #1793 from InfrPopGen/master
7b26841 - InfrPopGen, Thu Mar 23 19:20:43 2023 +0000 : Added new lineage CP.8.1 from #1627 with 0 new sequence designations, and 17 updated from CP.8, and 15 from BA.5.2.6
367c6fb - Cornelius Roemer, Thu Mar 23 18:06:49 2023 +0100 : feat: remove non-GISAID strainnames in deduplicate scripts
034686c - Angie Hinrichs, Wed Mar 22 15:41:25 2023 -0700 : Removed a few more INSDC accessions, all have COG-UK names already in lineages.csv.
10404d2 - Angie Hinrichs, Wed Mar 22 15:29:14 2023 -0700 : Replaced INSDC accessions with names, resolved duplicates. Also removed non-sequence-name "strain".
c0aa9f5 - InfrPopGen, Wed Mar 22 16:13:11 2023 +0000 : Merge pull request #1788 from InfrPopGen/master
f662df7 - InfrPopGen, Wed Mar 22 16:11:44 2023 +0000 : Added new lineage FF.1 from #1523 with 65 new sequence designations, and 0 updated
a354100 - Cornelius Roemer, Wed Mar 22 01:37:41 2023 +0100 : Added lineage XBB.1.5.30 (S:A348T) with 250 designations
1558fa9 - Cornelius Roemer, Wed Mar 22 01:35:08 2023 +0100 : Added lineage XBB.1.5.29 (S:A348V) with 25 designations
ae4a881 - Cornelius Roemer, Wed Mar 22 01:31:23 2023 +0100 : Added lineage FE.1 (XBB.1.18.1 with S:F456L) with 10 designations
9c8e360 - Cornelius Roemer, Wed Mar 22 01:21:33 2023 +0100 : Added lineage FD.1.1 (S:F456L) with 50 designations
eb0ca1d - Cornelius Roemer, Wed Mar 22 01:19:30 2023 +0100 : Added lineage FD.1 (XBB.1.5.15 with ORF7b:E3*) with 150 designations
2961a14 - Cornelius Roemer, Wed Mar 22 01:09:37 2023 +0100 : Added lineage FC.1 (BQ.1.1.72 with S:478R) with 80 designations
70571ac - Cornelius Roemer, Wed Mar 22 01:06:37 2023 +0100 : Added lineage BQ.1.1.72 (ORF1b:D100A) with 700 designations
c1c65a2 - Cornelius Roemer, Wed Mar 22 01:03:59 2023 +0100 : Added lineage FB.2 (S:478R) with 70 designations
80d74a9 - Cornelius Roemer, Wed Mar 22 01:02:25 2023 +0100 : Added lineage FB.1 (BQ.1.2.1 with S:D253G) with 25 designations
fbe7ed4 - Cornelius Roemer, Wed Mar 22 00:57:49 2023 +0100 : Added lineage DR.2 (BQ.1.1.3 with S:478R) with 70 designations
ff7b395 - Cornelius Roemer, Wed Mar 22 00:54:41 2023 +0100 : Added lineage FA.2 (BQ.1.1.10 with S:T323I) with 100 designations
92524ad - Cornelius Roemer, Wed Mar 22 00:53:35 2023 +0100 : Added lineage FA.1 (BQ.1.1.10 with S:478R) with 100 designations
115a58a - Cornelius Roemer, Wed Mar 22 00:49:51 2023 +0100 : Added lineage BE.13 (S:346T, S:478R) with 110 designations
df35dea - Cornelius Roemer, Wed Mar 22 00:46:41 2023 +0100 : Added lineage BE.12 (C10834T, T18975C, A29359G) with 300 designations
cc043ad - Cornelius Roemer, Wed Mar 22 00:42:03 2023 +0100 : Added lineage BE.11 (T3049C) with 1000 designations
af92f39 - Cornelius Roemer, Wed Mar 22 00:19:03 2023 +0100 : Added lineage XBB.1.5.28 (S:478R on 17124C polytomy) with 50 designations
29a8c5e - Cornelius Roemer, Wed Mar 22 00:15:20 2023 +0100 : Added lineage EK.2.1 (S:478R) with 35 designations
cb29522 - Cornelius Roemer, Wed Mar 22 00:13:29 2023 +0100 : Added lineage EK.3 (S:P251S) with 130 designations
32848ee - Cornelius Roemer, Wed Mar 22 00:09:05 2023 +0100 : Added lineage XBB.1.5.27 (S:K478R) with 60 designations
39015b3 - Cornelius Roemer, Wed Mar 22 00:06:10 2023 +0100 : Added lineage XBB.1.16.1 (S:T547I) with 60 designations
3ba50f5 - Cornelius Roemer, Wed Mar 22 00:04:09 2023 +0100 : Added lineage XBB.1.27 (S:478R, S:A890V) with 20 designations
42f97a9 - Cornelius Roemer, Tue Mar 21 23:54:35 2023 +0100 : Added lineage EZ.1 (BQ.1.1.43 with S:S247N, S:Y248S) with 50 designations
764d273 - Cornelius Roemer, Tue Mar 21 23:50:56 2023 +0100 : Added lineage EY.1 (EF.1.1.1 with S:Q613H) with 150 designations
911be60 - Cornelius Roemer, Tue Mar 21 23:42:28 2023 +0100 : Added lineage EW.3 (S:A348S) with 50 designations
c433f46 - Cornelius Roemer, Tue Mar 21 23:40:10 2023 +0100 : Added lineage EW.2 (S:A701V) with 200 designations
49a6cbb - Cornelius Roemer, Tue Mar 21 23:38:17 2023 +0100 : Added lineage EW.1 (BQ.1.1.38 with S:478R) with 80 designations
bd69c9c - Cornelius Roemer, Tue Mar 21 23:34:53 2023 +0100 : Added lineage EV.1 (BQ.1.1.71 with S:248H) with 15 designations
6419f4a - Angie Hinrichs, Mon Mar 20 15:45:07 2023 -0700 : Removing incomplete sequence name.
f19893e - Angie Hinrichs, Mon Mar 20 15:15:28 2023 -0700 : Updating some names that have been updated in GISAID and removing some resulting duplicates.
f10c6f5 - Angie Hinrichs, Mon Mar 20 15:00:36 2023 -0700 : Removing non-sequence-name words (gene names and "strain" column header).
27a04d8 - Angie Hinrichs, Mon Mar 20 14:58:23 2023 -0700 : Replaced INSDC accessions with names, resolved duplicates.
0339b26 - Angie Hinrichs, Mon Mar 20 14:18:59 2023 -0700 : Resolved 853 duplicates introduced with recently added lineages e.g. XBB.1.5.23, XBB.1.5.24, CP.8, XBB.1.17.1
15464b9 - Angie Hinrichs, Mon Mar 20 13:19:44 2023 -0700 : Merge pull request #1774 from AngieHinrichs/addSequences_2023-03-16
b487aa6 - Angie Hinrichs, Fri Mar 17 17:02:49 2023 -0700 : Added 894 sequences (900 random minus dups) for BQ.1.1.22
cfe80c6 - Angie Hinrichs, Fri Mar 17 17:01:27 2023 -0700 : Added 3966 sequences (4000 random minus dups) for BA.5.2.6
14e413e - Angie Hinrichs, Fri Mar 17 16:59:32 2023 -0700 : Correcting 5 designations from BA.5.2 to BA.5.2.6.
536f5f2 - Angie Hinrichs, Fri Mar 17 16:53:23 2023 -0700 : Added 1982 sequences (2000 random minus dups) for BR.2.1
ccbe5c7 - Angie Hinrichs, Fri Mar 17 16:51:40 2023 -0700 : Added 2480 sequences (2500 random minus dups) for XBF
cc686e1 - Angie Hinrichs, Fri Mar 17 16:46:56 2023 -0700 : Added 9885 sequences (10000 random minus dups) for BF.7
b30321e - Angie Hinrichs, Fri Mar 17 16:39:50 2023 -0700 : Correcting 48 designations from BA.5.2.1 to BF.7.
f7aa78d - Angie Hinrichs, Fri Mar 17 16:31:49 2023 -0700 : Added 994 sequences (1000 random minus dups) for CL.1
143dcb6 - Angie Hinrichs, Fri Mar 17 16:29:27 2023 -0700 : Added 879 sequences (900 random minus dups) for CK.2.1
801bcd6 - Angie Hinrichs, Fri Mar 17 16:21:55 2023 -0700 : Added 2383 sequences (2400 random minus dups) for BN.1.2
ceeb126 - Angie Hinrichs, Fri Mar 17 16:19:26 2023 -0700 : Added 5965 sequences (6000 random minus dups) for XBB.1
e5f31e5 - Angie Hinrichs, Fri Mar 17 15:58:49 2023 -0700 : Added 299 sequences (300 random minus dups) for BN.3.1
d70a6d1 - Angie Hinrichs, Fri Mar 17 15:45:14 2023 -0700 : Added 2954 sequences (3000 random minus dups) for BQ.1.1.4
ede7164 - Angie Hinrichs, Fri Mar 17 15:43:37 2023 -0700 : Added 1968 sequences (2000 random minus dups) for BQ.1.5
1211b1e - Angie Hinrichs, Fri Mar 17 15:42:35 2023 -0700 : Added 196 sequences (200 random minus dups) for DB.1
d587e89 - Angie Hinrichs, Fri Mar 17 15:41:50 2023 -0700 : Added 146 sequences (150 random minus dups) for BQ.1.26
3eae2e6 - Angie Hinrichs, Fri Mar 17 15:40:47 2023 -0700 : Added 2460 sequences (2500 random minus dups) for BF.14
fe381dd - Angie Hinrichs, Fri Mar 17 15:39:36 2023 -0700 : Added 1480 sequences (1500 random minus dups) for BN.1.3.1
8e36d35 - Angie Hinrichs, Fri Mar 17 15:38:39 2023 -0700 : Added 397 sequences (400 random minus dups) for BN.1.2.1
7c5a841 - Angie Hinrichs, Fri Mar 17 15:37:02 2023 -0700 : Added 3453 sequences (3500 random minus dups) for BN.1.3
a0511ad - Angie Hinrichs, Fri Mar 17 15:36:06 2023 -0700 : Added 296 sequences (300 random minus dups) for BR.2
4a48e5c - Angie Hinrichs, Fri Mar 17 15:34:44 2023 -0700 : Added 2475 sequences (2500 random minus dups) for BQ.1.8
25691e5 - Angie Hinrichs, Fri Mar 17 15:33:43 2023 -0700 : Added 2952 sequences (3000 random minus dups) for BF.7.4.1
7426dd2 - Angie Hinrichs, Fri Mar 17 15:32:43 2023 -0700 : Added 2471 sequences (2500 random minus dups) for BQ.1.12
bde8a9f - Angie Hinrichs, Fri Mar 17 15:28:18 2023 -0700 : Added 2367 sequences (2400 random minus dups) for BQ.1.14
e54d8a2 - Angie Hinrichs, Fri Mar 17 15:27:02 2023 -0700 : Added 593 sequences (600 random minus dups) for XBB.1.4.1
3bc1aca - Angie Hinrichs, Fri Mar 17 15:25:10 2023 -0700 : Added 593 sequences (600 random minus dups) for BA.2.75.5
9c5fbcf - Angie Hinrichs, Fri Mar 17 15:15:45 2023 -0700 : Don't add blank line at end of file.
969f3ab - Angie Hinrichs, Fri Mar 17 15:12:56 2023 -0700 : Added 294 sequences (300 random minus dups) for BM.1.1
ff51501 - Angie Hinrichs, Fri Mar 17 15:11:56 2023 -0700 : Added 2480 sequences (2500 random minus dups) for CH.1.1.1
60100c5 - Angie Hinrichs, Fri Mar 17 15:10:30 2023 -0700 : Added 597 sequences (600 random minus dups) for CQ.2
87eaa56 - Angie Hinrichs, Fri Mar 17 15:09:21 2023 -0700 : Added 992 sequences (1000 random minus dups) for BQ.1.1.2
ddcd45d - Angie Hinrichs, Fri Mar 17 15:08:16 2023 -0700 : Added 1993 sequences (2000 random minus dups) for BQ.1.1.20
202b91a - Angie Hinrichs, Fri Mar 17 15:06:56 2023 -0700 : Added 1381 sequences (1400 random minus dups) for BQ.1.18
d5f6a1e - Angie Hinrichs, Fri Mar 17 15:03:30 2023 -0700 : Correcting 30 designations from BQ.1.1.69 to BQ.1.18.
3247db2 - Angie Hinrichs, Fri Mar 17 14:33:22 2023 -0700 : Added 698 sequences (700 random minus dups) for BQ.1.1.13
9944ede - Angie Hinrichs, Fri Mar 17 14:31:22 2023 -0700 : Added 992 sequences (1000 random minus dups) for BQ.1.1.10
a4a64d4 - Angie Hinrichs, Fri Mar 17 14:29:51 2023 -0700 : Added 1491 sequences (1500 random minus dups) for XBB.2
347f2a2 - Angie Hinrichs, Fri Mar 17 14:27:35 2023 -0700 : Added 1490 sequences (1500 random minus dups) for BA.2.75.2
c8d2cf9 - Angie Hinrichs, Fri Mar 17 14:26:15 2023 -0700 : Added 296 sequences (300 random minus dups) for CM.8.1
6b40173 - Angie Hinrichs, Fri Mar 17 14:25:06 2023 -0700 : Added 4977 sequences (5000 random minus dups) for BQ.1.2
bcb4abb - Angie Hinrichs, Fri Mar 17 11:56:24 2023 -0700 : Added 352 sequences (400 random minus dups) for BF.7.7
2db361e - Angie Hinrichs, Fri Mar 17 11:51:50 2023 -0700 : Correcting some BE.1.4 designations that should be BF.7.7. History: commit b706220 added 111 BF.7.7 designations, but then 4cc824a wiped out all but one of them, redesignating them as BE.1.4 and adding some more sequences as BE.1.4 that should be BF.7.7.
be4348c - Angie Hinrichs, Fri Mar 17 10:52:51 2023 -0700 : Added 2981 sequences (3000 random minus dups) for BQ.1.3
454efa3 - Angie Hinrichs, Fri Mar 17 10:47:17 2023 -0700 : Added 994 sequences (1000 random minus dups) for BA.2.3.20
c3f7fac - Angie Hinrichs, Fri Mar 17 10:37:47 2023 -0700 : Added 997 sequences (1000 random minus dups) for XBB
55f29f7 - Angie Hinrichs, Fri Mar 17 10:35:41 2023 -0700 : Added 1489 sequences (1500 random minus dups) for BN.1
f2f47f1 - Angie Hinrichs, Fri Mar 17 10:32:26 2023 -0700 : Added 8948 sequences (9000 random minus dups) for BQ.1
53822b7 - Angie Hinrichs, Fri Mar 17 10:29:46 2023 -0700 : Added 5995 sequences (6000 random minus dups) for CH.1.1 which had only 6
475eba8 - Angie Hinrichs, Fri Mar 17 10:24:13 2023 -0700 : Added 9992 sequences (10000 random minus dups) for XBB.1.5 which had only 3
a09730f - Angie Hinrichs, Thu Mar 16 21:13:33 2023 -0700 : Add 9996 sequences (10000 random minus dups) for BQ.1.1 which had only 2
3f50157 - Cornelius Roemer, Mon Mar 20 18:22:19 2023 +0100 : Added lineage DV.5 (ORF1a:R24C, S:613H) from #1753
3812bd7 - Cornelius Roemer, Mon Mar 20 18:20:04 2023 +0100 : Added lineage CH.1.1.17 (M:S212G, on C21811T) from #1753
2fbaa60 - Cornelius Roemer, Mon Mar 20 18:18:08 2023 +0100 : Added lineage CH.1.1.16 (S:613H, ORF3a:S26L, on C193T branch) from #1753
9822bfb - Cornelius Roemer, Mon Mar 20 17:41:33 2023 +0100 : Added lineage XBB.1.26 (T10663C on 28297C branch)
a69b4b2 - Cornelius Roemer, Mon Mar 20 17:38:14 2023 +0100 : Added lineage XBB.1.25 (C673T, G487T, on 28297C branch)
a48c0a4 - Cornelius Roemer, Mon Mar 20 17:35:34 2023 +0100 : fix: #1654 lineage from previous commit is XBB.1.24 not XBB.1.5.27
030b4fa - Cornelius Roemer, Sun Mar 19 23:48:48 2023 +0100 : Added lineage XBB.1.5.27 (S:F486P) from #1654 with 25 designations
1b038ea - Cornelius Roemer, Sun Mar 19 23:13:43 2023 +0100 : Added lineage XBB.2.7 (ORF1a:R3662H)
77ccad4 - Cornelius Roemer, Sun Mar 19 23:03:57 2023 +0100 : Added lineages XBJ.2 (C22006T), XBJ.3 (ORF1a:K2928N), XBJ.4 (S:G485D)
45761f6 - Cornelius Roemer, Sun Mar 19 22:59:12 2023 +0100 : Added XBJ.1 (A16011G) and XBJ.1.1 (S:G485D, N:R195K) from #1591
093c3c1 - Cornelius Roemer, Sun Mar 19 22:47:55 2023 +0100 : Added lineage XBB.1.23 (E:S68F)
04782b5 - Cornelius Roemer, Sun Mar 19 22:40:16 2023 +0100 : Added lineages XBB.1.9.4 (28603T) and XBB.1.9.5 (ORF1a:D629E)
d6e8d67 - Cornelius Roemer, Sun Mar 19 22:31:50 2023 +0100 : Added lineages XBB.1.22 (S:486P), XBB.1.22.1 (S:200C), XBB.1.22.2 from #1704
98038d6 - Cornelius Roemer, Sun Mar 19 22:08:34 2023 +0100 : Added lineage XBC.2.1 (S:K444T) from #1538 with 15 designations
efb56c9 - Cornelius Roemer, Sun Mar 19 21:48:27 2023 +0100 : Added lineage XBB.1.21 (S:F486A) with 30 designations from #1646
7df7196 - Cornelius Roemer, Sun Mar 19 21:34:11 2023 +0100 : Added lineage XBF.8.1 (S:P621S) with 30 designations from #1651
8501884 - Cornelius Roemer, Sun Mar 19 21:11:36 2023 +0100 : Added lineages XBB.1.5.26 (920T), EU.1 (S:521S), EU.1.1 (S:410V) from #1688
ed4a524 - Cornelius Roemer, Sun Mar 19 20:24:41 2023 +0100 : Added recombinant XBY (BR.2.1, XBF) from #1669 with 17 designations
ea09cdf - Cornelius Roemer, Sun Mar 19 19:39:26 2023 +0100 : Added recombinant XBW (XBB.1.5, BQ.1.14) with 19 designations from #1505
bbb71a0 - Cornelius Roemer, Sun Mar 19 19:04:48 2023 +0100 : Added lineage CP.8 (ORF1b:D1939G) with 600 designations
085e3fe - Cornelius Roemer, Sun Mar 19 18:47:04 2023 +0100 : Added lineage DV.1.1 (S:Q613H and N:T265I) with 300 designations from #1720
8c15ae7 - Cornelius Roemer, Sun Mar 19 18:28:53 2023 +0100 : Added recombinant XBV (CR.1, XBB.1) from #1460 with 25 designations
3e99cc6 - Cornelius Roemer, Sun Mar 19 17:40:15 2023 +0100 : Added lineage XBB.1.20 (ORF1a:P4312T, C541T, pre ORF8:8*) with 30 designations
403a93a - Cornelius Roemer, Sun Mar 19 17:37:49 2023 +0100 : Added lineage XBB.1.19.1 (S:E554K) with 60 designations
a4546ed - Cornelius Roemer, Sun Mar 19 17:32:32 2023 +0100 : Added lineage XBB.1.19 (S:486P, C541T, pre ORF8:8*) from #1680 with 80 designations
8e02db9 - Cornelius Roemer, Sun Mar 19 15:46:34 2023 +0100 : Added recombinant XBU (BA.2.75.3/BQ.1/BA.2.75.3) from #1425 with 30 designations
3f39aba - Cornelius Roemer, Sat Mar 18 22:55:27 2023 +0100 : Added lineage XBB.1.5.25 (S:97T) from #1643 with 150 designations
7d4a398 - Cornelius Roemer, Sat Mar 18 22:32:16 2023 +0100 : Added lineage XBB.1.5.24 (C2710T, pre T17124C) with 700 designations
3b74521 - Cornelius Roemer, Sat Mar 18 22:16:14 2023 +0100 : Added lineages XBB.1.18 (A8001G) and XBB.1.18.1 (S:S486P)
d08a99c - Cornelius Roemer, Sat Mar 18 21:52:44 2023 +0100 : Added lineage XBB.1.5.23 (ORF1a:P4220L, pre 17124C) with 170 designations
93241c1 - Cornelius Roemer, Sat Mar 18 21:44:47 2023 +0100 : Added lineage XBB.1.5.22 (ORF1a:E1498A, pre T17124C) with 150 designations
a7f228a - Cornelius Roemer, Sat Mar 18 20:54:21 2023 +0100 : Added lineages XBB.1.17 (T27995C,ORF1a:L469F), XBB.1.17.1 (S:215H, S:486P), XBB.1.17.2 from issue #1712
b2a317e - InfrPopGen, Thu Mar 16 19:48:09 2023 +0000 : Merge pull request #1767 from InfrPopGen/master
682898d - InfrPopGen, Thu Mar 16 19:46:27 2023 +0000 : Added new lineage XBC.1.6 from #1755 with 29 new sequence designations, and 0 updated
e958443 - Angie Hinrichs, Thu Mar 16 09:36:27 2023 -0700 : Fixing inconsistency of lineage_notes.txt vs. alias_key.json and #1058, flagged by @janko-js in #1762.
065b11e - InfrPopGen, Thu Mar 16 11:19:28 2023 +0000 : Merge pull request #1766 from InfrPopGen/master
7fc4433 - InfrPopGen, Thu Mar 16 11:17:48 2023 +0000 : Added new lineage ET.1 from #1732 with 152 new sequence designations, and 32 updated from BQ.1.1.35
63184eb - Angie Hinrichs, Wed Mar 15 11:54:32 2023 -0700 : Merge pull request #1756 from ciscorucinski/master
4a58d66 - ciscorucinski, Tue Mar 14 23:53:49 2023 +0900 : fixed phrasing irregularity
0bd3991 - InfrPopGen, Sat Mar 11 12:11:13 2023 +0000 : Merge pull request #1750 from InfrPopGen/master
a6a3943 - InfrPopGen, Sat Mar 11 12:10:10 2023 +0000 : Added new lineage BQ.1.32 from #1731 with 39 new sequence designations, and 0 updated
6acebab - Cornelius Roemer, Fri Mar 10 12:12:42 2023 +0100 : Added lineage BF.7.4.3 (S:F157L, N:A90S) from #1743
fb067af - InfrPopGen, Thu Mar 9 16:34:06 2023 +0000 : Merge pull request #1744 from InfrPopGen/master
4e7d507 - InfrPopGen, Thu Mar 9 16:32:46 2023 +0000 : Added new lineage CH.1.1.15 from #1726 with 159 new sequence designations, and 0 updated
7328e53 - InfrPopGen, Thu Mar 9 11:03:45 2023 +0000 : Merge pull request #1742 from InfrPopGen/master
39ad5fa - InfrPopGen, Thu Mar 9 11:02:06 2023 +0000 : Added new lineage ES.1 from #1722 with 62 new sequence designations, and 44 updated from BQ.1.1.65
e1c3f87 - InfrPopGen, Tue Mar 7 15:55:32 2023 +0000 : Merge pull request #1737 from InfrPopGen/master
6e17e79 - InfrPopGen, Tue Mar 7 15:54:03 2023 +0000 : Added new lineage ER.1.1 from #1715 with 0 new sequence designations, and 69 updated from ER.1
2331efb - Cornelius Roemer, Tue Mar 7 13:17:12 2023 +0100 : Add extra XBB.1.16 designations for more robust inference
7f20135 - InfrPopGen, Sun Mar 5 16:36:25 2023 +0000 : Merge pull request #1730 from InfrPopGen/master
3a9eb42 - InfrPopGen, Sun Mar 5 16:33:57 2023 +0000 : Added new lineage ER.1 from #1429 with 225 new sequence designations, and 10 updated from BQ.1.1.22
d6dd885 - InfrPopGen, Sun Mar 5 12:29:15 2023 +0000 : Merge pull request #1728 from InfrPopGen/master
dfe6991 - InfrPopGen, Sun Mar 5 12:28:01 2023 +0000 : Added new lineage XBB.1.16 from #1723 with 3 new sequence designations, and 0 updated
81bffd6 - InfrPopGen, Fri Mar 3 16:29:40 2023 +0000 : Merge pull request #1721 from InfrPopGen/master
91827c9 - InfrPopGen, Fri Mar 3 16:28:34 2023 +0000 : Added new lineage BQ.1.1.71 from #1713 with 26 new sequence designations, and 0 updated
ffea223 - InfrPopGen, Thu Mar 2 15:41:03 2023 +0000 : Merge pull request #1716 from InfrPopGen/master
15b9804 - InfrPopGen, Thu Mar 2 15:39:50 2023 +0000 : Added new lineage CP.7 from #1473 with 206 new sequence designations, and 0 updated
7e5d357 - InfrPopGen, Tue Feb 28 16:18:55 2023 +0000 : Merge pull request #1707 from InfrPopGen/master
d052e83 - InfrPopGen, Tue Feb 28 16:17:43 2023 +0000 : Added new lineage CY.2 from #1474 with 259 new sequence designations, and 0 updated
302d70a - InfrPopGen, Tue Feb 28 15:44:22 2023 +0000 : Merge pull request #1706 from InfrPopGen/master
9530ac7 - InfrPopGen, Tue Feb 28 15:42:52 2023 +0000 : Added new lineage EQ.1 from #1522 with 8 new sequence designations, and 213 updated from BA.5.1.33
c57183b - Cornelius Roemer, Sun Feb 26 14:04:31 2023 +0100 : Add #1479 to DY.1 lineage notes
5692c5c - Cornelius Roemer, Sun Feb 26 08:02:58 2023 +0100 : Added lineage XBC.1.5 (ORF1a:T708I) from #1671
4a49d94 - Cornelius Roemer, Sun Feb 26 07:56:13 2023 +0100 : Added lineages EP.1 (BM.1.1.4 with S:L452R) from #1676 and EP.2 (S:S1147L, N:G212S)
97474fd - Cornelius Roemer, Sun Feb 26 07:33:17 2023 +0100 : Added lineage EN.1 (BQ.1.1.46 with S:V1264L) from #1696
d863b3d - Cornelius Roemer, Sun Feb 26 07:25:35 2023 +0100 : Added lineage XBB.1.5.21 (ORF1a:K322R) with 400 designations
06fb9df - Cornelius Roemer, Sun Feb 26 07:23:06 2023 +0100 : Added lineage XBB.1.5.20 (C9532T) with 590 designations
7527580 - Cornelius Roemer, Sun Feb 26 07:21:28 2023 +0100 : Added lineage XBB.1.5.19 (ORF1b:R172C) with 500 designations
fb38540 - Cornelius Roemer, Sun Feb 26 07:19:31 2023 +0100 : Added lineage XBB.1.5.18 (ORF1a:T2300I) with 500 designations
20ec43c - Cornelius Roemer, Sun Feb 26 07:15:02 2023 +0100 : Added lineage XBB.1.5.17 (C23635T) with 800 designations
eacc937 - Cornelius Roemer, Sun Feb 26 07:13:01 2023 +0100 : Added lineage XBB.1.5.16 (T14766C) with 500 designations
1c9afe9 - Cornelius Roemer, Sun Feb 26 07:09:13 2023 +0100 : Added EK.2 (XBB.1.5.13 with S:T259I) with 80 designations
145737c - Cornelius Roemer, Sun Feb 26 07:06:48 2023 +0100 : Added lineage XBB.1.5.15 (G15957T) with 1000 designations
246161b - Cornelius Roemer, Sun Feb 26 07:04:28 2023 +0100 : Added lineage EM.1 (XBB.1.5.7.1, S:R214L) with 200 designations
2cfb89f - Cornelius Roemer, Sun Feb 26 07:00:35 2023 +0100 : Added lineage XBB.8 (T14574C) with 300 designations
e0f696f - Cornelius Roemer, Sun Feb 26 06:47:12 2023 +0100 : Added lineage XBB.2.6 (C5144T, T5731A) with 2000 designations
71480a8 - InfrPopGen, Fri Feb 24 16:59:34 2023 +0000 : Merge pull request #1691 from InfrPopGen/master
12f0e95 - InfrPopGen, Fri Feb 24 16:58:18 2023 +0000 : Added new lineage BF.7.14.7 from #1672 with 6 new sequence designations, and 1 updated from BF.7.14
7d015c1 - InfrPopGen, Fri Feb 24 15:05:46 2023 +0000 : Merge pull request #1690 from InfrPopGen/master
8fc0ca1 - InfrPopGen, Fri Feb 24 15:04:11 2023 +0000 : Added new lineage DV.3.1 from #1626 with 24 new sequence designations, and 25 updated from DV.3
7e0ab33 - InfrPopGen, Thu Feb 23 16:41:46 2023 +0000 : Merge pull request #1686 from InfrPopGen/master
778f076 - InfrPopGen, Thu Feb 23 16:40:29 2023 +0000 : Added new lineage DB.3 from #1613 with 10 new sequence designations, and 0 updated
cd3f3c9 - InfrPopGen, Thu Feb 23 10:48:56 2023 +0000 : Merge pull request #1685 from InfrPopGen/master
37f1772 - InfrPopGen, Thu Feb 23 10:47:30 2023 +0000 : Withdrawn lineage BA.5.2.64 from #1640, redesignated BA.5.12
e8dc78d - InfrPopGen, Wed Feb 22 17:10:59 2023 +0000 : Merge pull request #1683 from InfrPopGen/master
645f51a - InfrPopGen, Wed Feb 22 17:09:35 2023 +0000 : Added new lineage BA.5.2.64 from #1640 with 206 new sequence designations, and 0 updated
f25a2e4 - Cornelius Roemer, Tue Feb 21 17:45:42 2023 +0100 : Add issue #1631 to EL.1
f961da0 - Cornelius Roemer, Tue Feb 21 17:42:09 2023 +0100 : Make XAY/XBA alias_key.json more precise, thanks @ciscorucinski
62738a9 - Christopher Rucinski, Wed Feb 22 01:38:29 2023 +0900 : Added EL alias key (#1678)
aca49a0 - Cornelius Roemer, Tue Feb 21 00:34:54 2023 +0100 : Added lineages XBB.1.5.14 (C2695T) and EL.1 (XBB.1.5.14.1, S:Q675H)
b0b6a4d - Cornelius Roemer, Mon Feb 20 15:24:18 2023 +0100 : Add #1622 to XBC.1.4
018ed31 - Cornelius Roemer, Mon Feb 20 00:59:09 2023 +0100 : Reference #1664 in lineage notes for EG.1
74e8720 - Cornelius Roemer, Mon Feb 20 00:57:56 2023 +0100 : Add issue number to DY.3 lineage notes
4ec5aa1 - Cornelius Roemer, Sun Feb 19 23:19:23 2023 +0100 : Added lineage DV.4 (S:I714V) from #1617
b10c61c - Cornelius Roemer, Sun Feb 19 23:14:44 2023 +0100 : Added lineage EK.1 (XBB.1.5.13 with S:K417S) from #1638
2a44139 - Cornelius Roemer, Sun Feb 19 23:01:34 2023 +0100 : Added lineages XBB.1.5.11 (ORF1a:G401S), XBB.1.5.12 (S:T323I), XBB.1.5.13 (T21880C,G28079T)
8baca36 - Cornelius Roemer, Sun Feb 19 22:47:22 2023 +0100 : Added lineage DS.3 (ORF3a:G254V)
4940b75 - Cornelius Roemer, Sun Feb 19 22:44:59 2023 +0100 : Added lineages BN.1.4.2 (S:Q1113K), BN.1.4.3 (ORF1a:P1096T), BN.1.4.4 (ORF1b:V1149L, ORF1b:V1723M), BN.1.4.5 (ORF1a:T3287I), BN.1.5.2 (S:N481K)
e08a85d - Cornelius Roemer, Sun Feb 19 22:32:19 2023 +0100 : Added lineages BN.1.2.2 (C29546T), BN.1.2.3 (C1471T), BN.1.2.4 (ORF1b:D1746H)
1444034 - Cornelius Roemer, Sun Feb 19 22:22:15 2023 +0100 : Added lineages BN.1.3.6 (M:R174Q), BN.1.3.7 (ORF1a:T1429I), BN.1.3.8 (S:D1139H), EJ.1 (BN.1.3.8 with S:I1225V), EJ.2 (ORF1a:T4355I)
cb95a05 - Cornelius Roemer, Sun Feb 19 22:01:27 2023 +0100 : Added lineages CH.1.1.10 (ORF1a:G442S), CH.1.1.11 (ORF1a:A1176T), CH.1.1.12 (S:L858I), CH.1.1.13 (ORF3a:S171L) and CH.1.1.14 (N:T362I)
64a2e7f - Cornelius Roemer, Sun Feb 19 20:55:39 2023 +0100 : Added lineage BF.7.27 (C8752T)
9788743 - Cornelius Roemer, Sun Feb 19 20:48:09 2023 +0100 : Added lineages BF.7.14.4 (ORF1a:T1844I), BF.7.14.5 (C20703T), BF.7.14.6 (C1973T)
ab4f6cf - Cornelius Roemer, Sun Feb 19 20:31:12 2023 +0100 : Added lineage DY.4 (ORF1b:T2432I) and extra BA.5.2.48 designations
e7b3e70 - Cornelius Roemer, Sun Feb 19 20:24:18 2023 +0100 : Added lineage DY.3 (ORF1a:T1788M)
dffaa34 - Cornelius Roemer, Sun Feb 19 20:22:02 2023 +0100 : Added DY.2 (N:Q241K) from #1478
00d8629 - Cornelius Roemer, Sun Feb 19 20:08:05 2023 +0100 : Add extra XBF designations
a3cf13e - Cornelius Roemer, Sun Feb 19 20:07:40 2023 +0100 : Add deduplicate_keeping_first.py script to add extra designations without touching sublineages
2140218 - Cornelius Roemer, Sun Feb 19 20:00:14 2023 +0100 : Added lineage XBF.8 (T9931C, C12970T)
8561c09 - Cornelius Roemer, Sun Feb 19 19:56:44 2023 +0100 : Added lineage XBF.7.1 (S:T323I) with 30 designations
5dce2b9 - Cornelius Roemer, Sun Feb 19 19:54:04 2023 +0100 : Added lineages XBF.5 (C2455T), XBF.6 (ORF1a:V3986A) and XBF.7 (N:T379I)
625b0d0 - Cornelius Roemer, Sun Feb 19 19:04:15 2023 +0100 : Added lineage EH.1 (S:S247N, S:Y248S) from #1648
d39071c - Cornelius Roemer, Sun Feb 19 18:50:45 2023 +0100 : Added recombinant XBT (BA.5.2.34, BA.2.75, BA.5.2.34) from #1576
5ba0df0 - Cornelius Roemer, Sun Feb 19 18:21:04 2023 +0100 : Added recombinant XBS (BA.2.75* and BQ.1 (with S:R346T)) from #1567
ac001e2 - Cornelius Roemer, Sun Feb 19 18:12:59 2023 +0100 : Added recombinant XBR (BA.2.75* and BQ.1 (with S:R346T)) from #1637
23d8aed - Cornelius Roemer, Sun Feb 19 17:33:10 2023 +0100 : Added lineage XBK.1 (S:P1162S) from #1551
4753bfa - Cornelius Roemer, Sun Feb 19 17:31:06 2023 +0100 : Added lineage XBF.4 (ORF1a:H417Y)
2d744cd - Cornelius Roemer, Sun Feb 19 17:28:53 2023 +0100 : Added lineage XBB.2.5 (S:Q613H)
12f6d0b - Cornelius Roemer, Sun Feb 19 17:27:06 2023 +0100 : Added lineage XBB.1.9.3 (ORF1b:G2005S, ORF1b:G1568C)
18da557 - Cornelius Roemer, Sun Feb 19 17:24:09 2023 +0100 : Added lineage EG.1 (XBB.1.9.2 with S:Q613H) with 100 designations
a0c1961 - Cornelius Roemer, Sun Feb 19 17:17:33 2023 +0100 : Added lineage XBB.1.15 (ORF1ab:A540V) with 800 designations
31f1cc5 - Cornelius Roemer, Sun Feb 19 17:12:11 2023 +0100 : Added recombinant XBQ (BA.5.2 and CJ.1) with 80 designations from #1440 and autolin

pango-designation - pango designation v1.18.1

Published by aineniamh over 1 year ago

e22f5df - InfrPopGen, Tue Feb 14 15:43:08 2023 +0000 : Merge pull request #1657 from InfrPopGen/master
4008ec0 - InfrPopGen, Tue Feb 14 15:42:02 2023 +0000 : Added new lineage BA.5.2.63 from #1636 with 111 new sequence designations, and 0 updated
36a888f - Cornelius Roemer, Mon Feb 13 18:32:41 2023 +0100 : Withdraw BF.7.25 due to being defined by pangolin masked site
96691b9 - Cornelius Roemer, Mon Feb 13 18:09:25 2023 +0100 : Improved notes
69f1d2d - Cornelius Roemer, Mon Feb 13 13:41:41 2023 +0100 : Fix typos in lineage notes, thanks @DoropFan
02021bd - Josh Levy, Sun Feb 12 09:04:43 2023 -0800 : EB has incorrect alias (#1649)
cb2e940 - Cornelius Roemer, Sun Feb 12 14:28:21 2023 +0100 : Added lineages EE.5, EF.1 (BQ.1.1.13.1), EF.1.1, EF.1.1.1, EF.1.2, EF.1.3, EF.2
8b0a890 - Cornelius Roemer, Sun Feb 12 14:12:46 2023 +0100 : Added lineage EE.4 (S:Q52H) with 150 designations
fbed65c - Cornelius Roemer, Sun Feb 12 14:10:37 2023 +0100 : Added lineage BQ.1.1.4 with 500 designations
3974265 - Cornelius Roemer, Sun Feb 12 14:08:56 2023 +0100 : Added lineage EE.2 (ORF1b:V1538I) with 700 designations
55c6219 - Cornelius Roemer, Sun Feb 12 14:07:06 2023 +0100 : Added lineage EE.1 (N:T366I) with 800 designations
da0fbbd - Cornelius Roemer, Sun Feb 12 14:04:52 2023 +0100 : Added lineage ED.3 (S:D843N) with 120 designations
bb7eae7 - Cornelius Roemer, Sun Feb 12 14:02:17 2023 +0100 : Added lineage ED.2 (ORF1a:D928Y) with 700 designations
60a026d - Cornelius Roemer, Sun Feb 12 14:00:35 2023 +0100 : Added lineage ED.1 with 2000 (ORF3a:L108F, ORF1a:C433S) designations
96e9d5f - Cornelius Roemer, Sun Feb 12 02:37:39 2023 +0100 : Add defining mutation of BQ.1.1.52 to lineage notes
01d34e6 - Cornelius Roemer, Sun Feb 12 02:23:27 2023 +0100 : Added lineages BF.7.19.1 and BF.7.26 and fixed bug in lineages.csv
e4a3431 - Cornelius Roemer, Sun Feb 12 01:58:43 2023 +0100 : Added lineage BF.7.25 with 500 designations
75b9a21 - Cornelius Roemer, Sun Feb 12 01:56:34 2023 +0100 : Added lineage BF.7.24 with 1500 designations
6e7df40 - Cornelius Roemer, Sun Feb 12 01:54:03 2023 +0100 : Added lineage BF.7.23 (ORF1b:T239I) with 1000 designations
856e75a - Cornelius Roemer, Sun Feb 12 01:52:01 2023 +0100 : Added lineage BF.7.22 (ORF8:V81I) with 1500 designations
b5a8e51 - Cornelius Roemer, Sun Feb 12 01:49:35 2023 +0100 : Added lineage BF.7.21 with 2000 designations
88cb887 - Cornelius Roemer, Sun Feb 12 01:47:38 2023 +0100 : Added lineage BF.7.20 with 2000 designations
5d625e2 - Cornelius Roemer, Sun Feb 12 01:45:51 2023 +0100 : Added lineage BF.7.19 (ORF7a:R118S) with 1700 designations
02161a1 - Cornelius Roemer, Sun Feb 12 01:16:58 2023 +0100 : Added lineage BA.5.2.62 (S:A653V) with 300 designations
a56a2c1 - Cornelius Roemer, Sun Feb 12 01:05:01 2023 +0100 : Added lineage BA.5.2.61 (S:N450D) with 150 designations
74b20fe - Cornelius Roemer, Sun Feb 12 01:02:22 2023 +0100 : Added lineage BZ.2 (BA.5.2.3 with S:N450D) with 150 designations
f8bc66a - Cornelius Roemer, Sun Feb 12 00:56:23 2023 +0100 : Added lineage BA.5.2.60 (S:N450D) with 300 designations
1a27750 - Cornelius Roemer, Sun Feb 12 00:51:03 2023 +0100 : Added extra BA.5.2.32 designations
30772e4 - Cornelius Roemer, Sun Feb 12 00:47:44 2023 +0100 : Reselected BA.5.2.52 strains as there was a potential bug in them
0266194 - Cornelius Roemer, Sun Feb 12 00:05:18 2023 +0100 : Add issues to lineages
0217088 - Cornelius Roemer, Sat Feb 11 19:12:04 2023 +0100 : Added lineage CZ.2 (BQ.1.1.1.2, S:A688V) with 400 designations
034a603 - Cornelius Roemer, Sat Feb 11 19:08:42 2023 +0100 : Added lineages BQ.1.1.69 (ORF1b:S2027L) and BQ.1.1.70 (ORF1a:A903V, M:S212G)
3f422d7 - Cornelius Roemer, Sat Feb 11 19:04:57 2023 +0100 : Added lineage BQ.1.1.68 and DT.3 (BQ.1.1.32 with S:L176F)
8c6f04c - Cornelius Roemer, Sat Feb 11 19:00:21 2023 +0100 : Added lineage BQ.1.1.67 (S:L176F) with 700 designations
8bd01d1 - Cornelius Roemer, Sat Feb 11 18:54:07 2023 +0100 : Added lineage BQ.1.1.66 (S:K147N) with 100 designations
08f564a - Cornelius Roemer, Sat Feb 11 18:50:09 2023 +0100 : Added lineages BQ.1.1.64 (S:F186S) and BQ.1.1.65 (S:K147I)
4305e5f - Cornelius Roemer, Sat Feb 11 18:39:16 2023 +0100 : Added lineage BQ.1.1.63 (S:Y248H) with 250 designations
7834d48 - Cornelius Roemer, Sat Feb 11 18:34:54 2023 +0100 : Added lineages BQ.1.1.61 (S:P621H) and BQ.1.1.62 (S:P621S)
ced8155 - Cornelius Roemer, Sat Feb 11 18:30:47 2023 +0100 : Added lineages BQ.1.1.58 (S:I934V), BQ.1.1.59 (S:T732I) and BQ.1.1.60 (S:S691F)
d502042 - Cornelius Roemer, Sat Feb 11 18:20:11 2023 +0100 : Added lineages BQ.1.1.56 (S:H1101Y) and BQ.1.1.57 (S:S256A)
46e57d1 - Cornelius Roemer, Sat Feb 11 18:16:34 2023 +0100 : Added lineages BQ.1.1.54 (S:F186S, N:A211T) and BQ.1.1.55 (S:K1149R)
9590884 - Cornelius Roemer, Sat Feb 11 18:06:30 2023 +0100 : Added lineage BQ.1.1.53 (S:N185D) with 280 designations
a588301 - Cornelius Roemer, Sat Feb 11 18:00:51 2023 +0100 : Addedl lineage BQ.1.10.3 (S:K147E) with 100 designations
5388f08 - Cornelius Roemer, Sat Feb 11 17:58:02 2023 +0100 : Added lineage BQ.1.31 (S:K147E) with 300 designations
638d7d3 - Cornelius Roemer, Sat Feb 11 17:52:51 2023 +0100 : Added lineages BQ.1.30 (S:V445A), EC.1 (BQ.1.10.1 with S:Q613H) and EC.1.1 (S:V445A)
c1a359b - Cornelius Roemer, Sat Feb 11 17:09:27 2023 +0100 : Added lineages BA.5.2.58 (S:R346S on branch) and BA.5.2.59 (S:V1264L)
b51a617 - Cornelius Roemer, Sat Feb 11 17:04:11 2023 +0100 : Added lineage BA.5.2.57 (S:R346S) with 1400 designations
44b29c2 - Cornelius Roemer, Sat Feb 11 16:59:06 2023 +0100 : Added lineages BA.5.2.53 (S:A653V), BA.5.2.54 (S:N450D), BA.5.2.55, BA.5.2.56 (S:K444M)
8e63ff9 - Cornelius Roemer, Sat Feb 11 16:40:08 2023 +0100 : Added lineages BA.5.2.51 (S:K444R) and BA.5.2.52 (S:N450D)
3e600c1 - Cornelius Roemer, Sat Feb 11 16:34:07 2023 +0100 : Added extra designations for BA.5.2.50
f8d3387 - Cornelius Roemer, Sat Feb 11 16:29:54 2023 +0100 : Added lineages BF.41 (ORF7b:A43V) and BF.41.1 (S:R346T)
fd9b853 - Cornelius Roemer, Sat Feb 11 16:24:47 2023 +0100 : Added lineage BF.40 (S:V445A) with 200 designations
87e883b - Cornelius Roemer, Sat Feb 11 16:21:36 2023 +0100 : Added lineages BF.39 (S:G181V) and BF.39.1 (S:V445A, S:N450D)
c0130b5 - Cornelius Roemer, Sat Feb 11 16:15:56 2023 +0100 : Added lineages BF.38, BF.38.1(S:Q1201K), BF.38.2 (S:V445A), BF.38.3 (S:P1162S)
769c65b - Cornelius Roemer, Sat Feb 11 16:07:26 2023 +0100 : Added lineage BF.37 (ORF1a:S994L, S:G446D) with 300 designations
a664764 - Cornelius Roemer, Sat Feb 11 16:03:08 2023 +0100 : Added lineage BF.36 (ORF1a:S166G,ORF1b:S1273L,ORF1b:A1428V) with 2000 designations
1353f2f - Cornelius Roemer, Sat Feb 11 15:49:42 2023 +0100 : Added lineage BF.35 (S:N450D) with 130 designations
3a31d63 - Cornelius Roemer, Sat Feb 11 15:46:25 2023 +0100 : Added lineages BF.7.17 (S:A688V, S:G1167S) and BF.7.18 (S:K97N)
e55f0c3 - Cornelius Roemer, Sat Feb 11 15:39:01 2023 +0100 : Added lineages BF.7.16 (ORF1a:A498V) and BF.7.16.1 (S:A688V)
da048f5 - Cornelius Roemer, Sat Feb 11 15:14:59 2023 +0100 : Added lineages BA.5.1.36 (S:R346T & S:G261V) and BA.5.1.37 (S:R346T & S:Y248N)
f42fbf1 - Cornelius Roemer, Sat Feb 11 14:44:06 2023 +0100 : Added lineages BA.5.1.35 (ORF1a:I1525M) and EB.1 (BA.5.1.35 with S:R346T)
0f855a4 - Cornelius Roemer, Sat Feb 11 14:35:35 2023 +0100 : Added lineage BA.5.1.34 (S:P1162S) with 1400 designations
b500c69 - Cornelius Roemer, Sat Feb 11 14:32:19 2023 +0100 : Added lineage BA.5.1.33 (S:V1264L) with 1000 designations
3a42a0a - Cornelius Roemer, Sat Feb 11 14:27:05 2023 +0100 : Added lineages CL.1.1 (S:P1162L), CL.1.2 (S:T883I) and CL.1.3 (S:S71F)
c3b75ce - Cornelius Roemer, Sat Feb 11 02:35:25 2023 +0100 : Added lineage BQ.1.10.2 (S:T523N) with 250 designations
b726213 - Cornelius Roemer, Sat Feb 11 02:20:19 2023 +0100 : Added lineages EA.1 (ORF8:C102F/ins_S:247:SKWL) and EA.2 (S:T470I)
68b7875 - Cornelius Roemer, Sat Feb 11 02:16:02 2023 +0100 : Added lineage BQ.1.1.52 with 1000 designations
e16b4b9 - Cornelius Roemer, Sat Feb 11 02:06:15 2023 +0100 : Added lineage BQ.1.15.1 and BQ.1.15.2 (both with ins_S:247:SKWL)
504a2be - Cornelius Roemer, Sat Feb 11 01:57:00 2023 +0100 : Added lineage BQ.1.29 (S:E554Q) with 70 designations
e559fb0 - Cornelius Roemer, Sat Feb 11 01:39:49 2023 +0100 : Added lineages BW.1.1.1 (ORF1a:L864F) and BW.1.1.2 (ORF1b:P1101S)
80d36bc - Cornelius Roemer, Sat Feb 11 01:17:24 2023 +0100 : Added lineage XAY.1.1.1 (S:D1153Y) from #1569 with 20 designations
1dcf0fe - Cornelius Roemer, Sat Feb 11 01:08:56 2023 +0100 : Added lineages XAY.2.1 (N:T24A) and XAY.2.2 (ORF1a:N447S)
d3a59d8 - Cornelius Roemer, Sat Feb 11 00:53:31 2023 +0100 : Added lineage XBC.1.4 (S:G184S) with 30 designations
045fbf4 - Cornelius Roemer, Sat Feb 11 00:51:57 2023 +0100 : Added lineage XBC.1.3 with 80 designations
6bf3629 - Cornelius Roemer, Sat Feb 11 00:24:39 2023 +0100 : Added lineages XBF.2 (ORF8:V62A) and XBF.3 (ORF1a:V274I)
c14ed8f - Cornelius Roemer, Sat Feb 11 00:07:44 2023 +0100 : Added lineage XBF.1 (S:S939F) with 30 designations
0cfc348 - Cornelius Roemer, Fri Feb 10 23:49:14 2023 +0100 : Added lineage BQ.1.1.51 (ORF3a:L101F) with 1000 designations
c30d608 - Cornelius Roemer, Fri Feb 10 23:42:22 2023 +0100 : Added lineage XBB.1.14 (S:G75V, S:E554K) with 30 designations
05bd633 - Cornelius Roemer, Fri Feb 10 23:36:50 2023 +0100 : Added lineage BF.5.4 (ORF1a:K3839R) with 1700 designations
0456a36 - InfrPopGen, Fri Feb 10 15:01:04 2023 +0000 : Merge pull request #1645 from InfrPopGen/master
f261970 - InfrPopGen, Fri Feb 10 14:59:50 2023 +0000 : Added new lineage BQ.1.1.50 from #1577 with 39 new sequence designations, and 0 updated
649f695 - Cornelius Roemer, Fri Feb 10 14:10:26 2023 +0100 : Added lineage XBB.1.13 (S:S490P) with 80 designations from #1487
7c58a3c - Cornelius Roemer, Fri Feb 10 14:04:43 2023 +0100 : Added lineage XBB.1.5.10 (S:F456L) with 50 designations from #1614
954d328 - Cornelius Roemer, Fri Feb 10 13:41:42 2023 +0100 : Added lineage XBB.1.5.9 (N:S327L) with 100 designations
f2c3030 - Cornelius Roemer, Fri Feb 10 13:38:29 2023 +0100 : Added lineage XBB.1.5.8 (N:R10Q) with 80 designations
b187c65 - Cornelius Roemer, Fri Feb 10 13:35:48 2023 +0100 : Added lineage XBB.1.5.7 (ORF1b:V248F) with 600 designations
ee43333 - Cornelius Roemer, Fri Feb 10 13:26:54 2023 +0100 : Added lineage XBB.1.5.6 (S:V952I) with 60 designations
6581696 - Cornelius Roemer, Fri Feb 10 13:25:10 2023 +0100 : Added lineage XBB.1.5.5 (S:K1181I) with 80 designations
b61eb98 - Cornelius Roemer, Fri Feb 10 13:22:52 2023 +0100 : Added lineage XBB.1.5.4 (S:T883I) with 80 designations
eb6fd6b - Angie Hinrichs, Thu Feb 9 09:51:00 2023 -0800 : Merge pull request #1541 from ciscorucinski/master
e82f47f - Cornelius Roemer, Thu Feb 9 14:09:49 2023 +0100 : Added lineage XBB.1.12 (S:Y453F) with 15 designations
4745cc9 - InfrPopGen, Wed Feb 8 21:21:38 2023 +0000 : Merge pull request #1634 from InfrPopGen/master
26721e0 - InfrPopGen, Wed Feb 8 21:20:45 2023 +0000 : Added new lineage BF.5.3 from #1526 with 22 new sequence designations, and 0 updated
16f0fc7 - InfrPopGen, Wed Feb 8 20:25:18 2023 +0000 : Merge pull request #1633 from InfrPopGen/master
0a6d31e - InfrPopGen, Wed Feb 8 20:24:17 2023 +0000 : Deleted duplicate line for *F.1 in lineage_notes.txt, from #1525
2a6baef - InfrPopGen, Wed Feb 8 20:14:17 2023 +0000 : Merge pull request #1632 from InfrPopGen/master
d3594be - InfrPopGen, Wed Feb 8 20:13:34 2023 +0000 : Added missing entries for B.1.1.229 and B.1.1.230 to lineage_notes.txt, from #1524
106720c - InfrPopGen, Fri Feb 3 18:48:25 2023 +0000 : Merge pull request #1616 from InfrPopGen/master
f44dcd3 - InfrPopGen, Fri Feb 3 18:47:13 2023 +0000 : Added new lineage BA.4.1.11 from #1606 with 106 new sequence designations, and 0 updated
176dc18 - InfrPopGen, Fri Feb 3 15:57:30 2023 +0000 : Merge pull request #1615 from InfrPopGen/master
e99b7d2 - InfrPopGen, Fri Feb 3 15:56:00 2023 +0000 : Added new lineage DT.2 from #1612 with 392 new sequence designations, and 19 updated from BQ.1.1.32
59fa169 - Cornelius Roemer, Fri Feb 3 08:02:42 2023 +0100 : Added lineage XBB.2.4 (S:486P) with 19 designations
4c11479 - Cornelius Roemer, Fri Feb 3 07:58:56 2023 +0100 : Added 100 designations for XBB.1.9.1
c77f202 - Cornelius Roemer, Fri Feb 3 07:47:05 2023 +0100 : Added lineage XBB.1.9.2 (S:F486P after 27507C, 16878T) with 70 designations
cfc40ad - InfrPopGen, Thu Feb 2 19:56:47 2023 +0000 : Merge pull request #1611 from InfrPopGen/master
c5c877b - InfrPopGen, Thu Feb 2 19:55:16 2023 +0000 : Added new lineage BN.1.3.5 from #1516 with 601 new sequence designations, and 0 updated
04cb7e2 - InfrPopGen, Tue Jan 31 17:06:57 2023 +0000 : Merge pull request #1605 from InfrPopGen/master
57cd4ec - InfrPopGen, Tue Jan 31 17:05:37 2023 +0000 : Added new lineage DJ.1.1.1 from #1407 with 329 new sequence designations, and 0 updated
d3365f0 - InfrPopGen, Tue Jan 31 15:15:39 2023 +0000 : Merge pull request #1604 from InfrPopGen/master
c36cc97 - InfrPopGen, Tue Jan 31 15:14:29 2023 +0000 : Added new lineage DY.1.1 from #1599 with 0 new sequence designations, and 9 updated from DY.1
27a31dc - Cornelius Roemer, Tue Jan 31 15:35:42 2023 +0100 : Added lineages XBB.1.11 (C13968A/G16377A) and XBB.1.11.1 (S:S486P) from #1490
8df7556 - Cornelius Roemer, Tue Jan 31 14:21:31 2023 +0100 : Added lineage XBB.2.3 (S:P521S and S:S486P) with 26 designations
f55b27e - Cornelius Roemer, Tue Jan 31 11:25:36 2023 +0100 : Added lineage XBB.7 (S:Q613H) with 50 designations
6a3ca6a - Cornelius Roemer, Tue Jan 31 10:34:36 2023 +0100 : Added lineage DZ.2 (BA.5.2.49 with S:G75V) with 100 designations
724077c - Cornelius Roemer, Mon Jan 30 22:36:34 2023 +0100 : Added lineage BQ.1.1.49 (S:H1083D) with 50 designations
491d71a - Cornelius Roemer, Mon Jan 30 22:29:45 2023 +0100 : Added lineage BQ.1.1.48 (S:H245N) with 100 designations
006dcba - InfrPopGen, Mon Jan 30 18:34:06 2023 +0000 : Merge pull request #1592 from InfrPopGen/master
3fc2724 - InfrPopGen, Mon Jan 30 18:32:20 2023 +0000 : Added new recombinant lineage XBP from #1393 with 4 new sequence designations, and 0 updated designations
4731737 - Cornelius Roemer, Mon Jan 30 17:26:39 2023 +0100 : Added lineages DN.1.1.1 (S:Y453F) and DN.1.1.2 (S:P479L)
f78f346 - Cornelius Roemer, Sun Jan 29 00:36:37 2023 +0100 : Added lineage XBB.1.5.3 (S:A411S) with 43 designations
1515a38 - Cornelius Roemer, Sun Jan 29 00:04:48 2023 +0100 : Added lineage XBB.1.5.2 (S:T284I, S:K147I) with 30 designations
9d94dba - Cornelius Roemer, Sat Jan 28 23:59:23 2023 +0100 : Added lineage XBB.1.5.1 (S:T573I) with 75 designations
a62b092 - Cornelius Roemer, Sat Jan 28 23:39:00 2023 +0100 : Added lineage DZ.1 (BA.5.2.49 with S:D1146Y) with 50 designations
2147ae9 - Cornelius Roemer, Sat Jan 28 23:33:37 2023 +0100 : Added lineage BF.7.14.3 (S:A626V) with 50 designations
681fd02 - Cornelius Roemer, Sat Jan 28 23:31:54 2023 +0100 : Added lineage BF.7.14.2 (S:Q14H) with 50 designations
2bf0f32 - Cornelius Roemer, Sat Jan 28 23:27:40 2023 +0100 : Added lineage DY.1 (BA.5.2.48 with S:A570S) with 450 designations
8297f3d - Cornelius Roemer, Sat Jan 28 23:05:52 2023 +0100 : Added lineage XBB.1.10 (S:A852V, S:R403K) with 10 designations
e51a72c - Cornelius Roemer, Sat Jan 28 22:57:38 2023 +0100 : Added lineage DS.2 (BN.1.3.1 with S:T572I) with 150 designations
d6a6770 - Cornelius Roemer, Sat Jan 28 22:37:04 2023 +0100 : Added lineages CM.8.1.1 (S:K147N) and CM.8.1.2 (S:K147I)
b8097ba - Cornelius Roemer, Sat Jan 28 22:24:52 2023 +0100 : Added lineage BQ.1.1.47 (S:K147I) with 250 designations
1787b25 - Cornelius Roemer, Sat Jan 28 22:22:17 2023 +0100 : Added lineage BQ.1.1.46 (S:F157L) with 200 designations
43ed947 - Cornelius Roemer, Sat Jan 28 22:20:54 2023 +0100 : Added lineage BQ.1.1.45 (S:Y248D) with 300 designations
9e30232 - Cornelius Roemer, Sat Jan 28 22:19:10 2023 +0100 : Added lineage BQ.1.1.44 (S:D253G) with 100 designations
4a2ed07 - Cornelius Roemer, Sat Jan 28 22:15:23 2023 +0100 : Added lineage BQ.1.1.43 (S:Q613H with C26292T) with 200 designations
ab671f6 - Cornelius Roemer, Sat Jan 28 22:11:47 2023 +0100 : Added lineage BQ.1.1.42 (S:S704L) with 300 designations
f8243dd - Cornelius Roemer, Sat Jan 28 21:54:55 2023 +0100 : Added lineage BQ.1.1.41 (S:K182I) with 1000 designations
cad4967 - Cornelius Roemer, Sat Jan 28 21:47:39 2023 +0100 : Added lineage BQ.1.1.40 (N:T24I) with 1000 designations
21cfa31 - Cornelius Roemer, Sat Jan 28 21:23:36 2023 +0100 : Added lineage BN.1.11 (S:L176F, S:D936H) with 100 designations
17bb44b - Cornelius Roemer, Sat Jan 28 21:20:05 2023 +0100 : Added lineage BN.1.10 (S:Y145H) with 100 designations
faf3d49 - Cornelius Roemer, Sat Jan 28 21:00:39 2023 +0100 : Added lineages CH.1.1.8 (S:A846V) and CH.1.1.9 (S:I1232V)
009df03 - Cornelius Roemer, Sat Jan 28 20:55:44 2023 +0100 : Added lineage CH.1.1.7 (ORF1a:F143C) with 600 designations
6fe574b - Cornelius Roemer, Sat Jan 28 20:51:26 2023 +0100 : Added lineage CH.1.1.6 (S:T732I) with 100 designations
73bbed7 - Cornelius Roemer, Sat Jan 28 20:35:21 2023 +0100 : Added lineage DV.3 (CH.1.1.1 with ORF1a:E377K) with 300 designations
260722c - Cornelius Roemer, Sat Jan 28 20:32:46 2023 +0100 : Added lineage DV.2 (CH.1.1.1 with S:I569V) with 70 designations
4fa9c61 - InfrPopGen, Sat Jan 28 15:05:56 2023 +0000 : Merge pull request #1588 from InfrPopGen/master
e55e5af - InfrPopGen, Sat Jan 28 15:04:46 2023 +0000 : Added new lineage BQ.1.2.1 from #1392 with 570 new sequence designations, and 0 updated
9f6daf7 - InfrPopGen, Fri Jan 27 16:57:55 2023 +0000 : Merge pull request #1587 from InfrPopGen/master
c1cc4b0 - InfrPopGen, Fri Jan 27 16:56:41 2023 +0000 : Added new lineage BQ.1.1.39 from #1385 with 86 new sequence designations, and 0 updated
f03e994 - InfrPopGen, Fri Jan 27 15:25:58 2023 +0000 : Merge pull request #1586 from InfrPopGen/master
bff1ca3 - InfrPopGen, Fri Jan 27 15:24:50 2023 +0000 : Added new lineage BR.5 from #1345 with 59 new sequence designations, and 0 updated
46af3ad - InfrPopGen, Thu Jan 26 16:23:46 2023 +0000 : Merge pull request #1584 from InfrPopGen/master
e7d9fda - InfrPopGen, Thu Jan 26 16:22:04 2023 +0000 : Added new lineage BQ.1.11.1 from #1581 with 58 new sequence designations, and 0 updated
8cceaa2 - InfrPopGen, Wed Jan 25 15:26:34 2023 +0000 : Merge pull request #1582 from InfrPopGen/master
2b134a5 - InfrPopGen, Wed Jan 25 15:25:18 2023 +0000 : Added new lineage BF.7.14.1 from #1580 with 84 new sequence designations, and 2 updated from BF.7.14
376a341 - InfrPopGen, Tue Jan 24 17:19:02 2023 +0000 : Merge pull request #1579 from InfrPopGen/master
08222bc - InfrPopGen, Tue Jan 24 17:17:39 2023 +0000 : Added new lineage BQ.1.1.38 from #1419 with 111 new sequence designations, and 0 updated
e9bd164 - InfrPopGen, Mon Jan 23 16:34:57 2023 +0000 : Merge pull request #1575 from InfrPopGen/master
599908d - InfrPopGen, Mon Jan 23 16:33:26 2023 +0000 : Added new lineage BQ.1.1.37 from #1571 with 29 new sequence designations, and 0 updated
eaceff4 - InfrPopGen, Mon Jan 23 15:32:48 2023 +0000 : Merge pull request #1574 from InfrPopGen/master
3071e8d - InfrPopGen, Mon Jan 23 15:30:58 2023 +0000 : Added new lineage DW.1 from #1564 with 21 new sequence designations, and 0 updated
9230958 - InfrPopGen, Sun Jan 22 18:55:40 2023 +0000 : Merge pull request #1572 from InfrPopGen/master
c0d4776 - InfrPopGen, Sun Jan 22 18:54:16 2023 +0000 : Moved lineage_notes.txt entry for BA.5.2.50 to correct position in file, from #1570
80b90d4 - InfrPopGen, Sat Jan 21 13:29:11 2023 +0000 : Merge pull request #1568 from InfrPopGen/master
e914fca - InfrPopGen, Sat Jan 21 13:28:19 2023 +0000 : Added new lineage BA.5.2.50 from #1542 with 4 new sequence designations, and 0 updated
391cde5 - InfrPopGen, Sun Jan 15 16:04:31 2023 +0000 : Merge pull request #1555 from InfrPopGen/master
04a87cf - InfrPopGen, Sun Jan 15 16:03:24 2023 +0000 : Added new lineage BA.5.1.32 from #1488 with 42 new sequence designations, and 0 updated
3716693 - InfrPopGen, Sat Jan 14 16:28:13 2023 +0000 : Merge pull request #1550 from InfrPopGen/master
92204c4 - InfrPopGen, Sat Jan 14 16:26:24 2023 +0000 : Added new recombinant lineage XBN from #1296 with 21 new sequence designations, and 0 updated designations
d489994 - Cornelius Roemer, Sat Jan 14 11:00:00 2023 +0100 : Added lineage BQ.1.1.36 (S:T883I) with 150 designations
f316bd0 - Cornelius Roemer, Sat Jan 14 10:50:48 2023 +0100 : Added lineage DV.1 (CH.1.1.1 with S:L176F) with 94 designations
b5548ed - Cornelius Roemer, Sat Jan 14 10:26:36 2023 +0100 : Added lineage BQ.1.1.35 (S:K147E) with 300 designations
d8a9748 - InfrPopGen, Fri Jan 13 11:35:48 2023 +0000 : Merge pull request #1549 from InfrPopGen/master
ff07bb6 - InfrPopGen, Fri Jan 13 11:34:26 2023 +0000 : Added new lineage CH.1.1.5 from #1539 with 82 new sequence designations, and 0 updated
a8ff2d6 - InfrPopGen, Thu Jan 12 21:47:05 2023 +0000 : Merge pull request #1547 from InfrPopGen/master
56ca02e - InfrPopGen, Thu Jan 12 21:45:11 2023 +0000 : Added new lineage DU.1 from #1540 with 56 new sequence designations, and 0 updated
09ee373 - ciscorucinski, Tue Jan 10 23:57:30 2023 +0900 : Fixed phrasing irregularity #1537

pango-designation - pango designations v1.18

Published by aineniamh almost 2 years ago

Release notes

cc0d14b - Cornelius Roemer, Mon Jan 9 07:04:11 2023 +0100 : Added lineage BN.1.5.1 (S:S514T) with 60 designations
e552e8e - Cornelius Roemer, Mon Jan 9 06:56:49 2023 +0100 : Added lineage XAY.1.2 (ORF1a:T3646I) with 10 designations
ca542b5 - Cornelius Roemer, Mon Jan 9 06:54:03 2023 +0100 : Added lineage XAY.3 with 11 designations
7406b00 - Cornelius Roemer, Mon Jan 9 05:48:58 2023 +0100 : Added lineage BA.5.2.49 (S:T883I) from #1480 with 78 designations
7c91675 - Cornelius Roemer, Mon Jan 9 05:26:32 2023 +0100 : Added lineage XBB.1.9.1 (S:F486P) with 9 designations
ed29b76 - Cornelius Roemer, Mon Jan 9 05:23:57 2023 +0100 : Added lineage XBB.1.9 (ORF1a:G1819S, ORF1a:T4175I) with 500 designations
7d8cc09 - Cornelius Roemer, Mon Jan 9 05:18:19 2023 +0100 : Added lineage XBB.6.1 (S:F486P) from #1459 with 20 designations
509ce7e - Cornelius Roemer, Mon Jan 9 05:16:58 2023 +0100 : Added lineage XBB.6 (C14178T) with 120 designations
11fa799 - Cornelius Roemer, Mon Jan 9 04:56:19 2023 +0100 : Added lineage BN.1.4.1 (S:G261V, S:T678I) from #1417 with 100 designations
8a456b9 - Cornelius Roemer, Mon Jan 9 04:50:00 2023 +0100 : Added lineages BM.1.1.4 (from #1438) and BM.1.1.5
e7850c6 - Cornelius Roemer, Mon Jan 9 04:40:01 2023 +0100 : Added recombinant XBM (BA.2.76/BF.3) from #1441 with 110 designations
2b98c93 - Cornelius Roemer, Mon Jan 9 04:29:45 2023 +0100 : Added lineage BA.2.3.22 (8 S AA muts) from #1462 with 11 designations
458a57c - Cornelius Roemer, Mon Jan 9 04:21:21 2023 +0100 : Added lineage CK.1.2 (S:G181V, S:346T) from #1467 with 55 designations
9c9c850 - Cornelius Roemer, Mon Jan 9 04:17:22 2023 +0100 : Added lineage CM.12 (ORF8:T12I) from #1481 with 80 designations
06dd3f5 - Cornelius Roemer, Mon Jan 9 04:06:36 2023 +0100 : Added lineage BQ.1.1.34 (S:144-, S:494P) from #1483 with 20 designations
671767a - Cornelius Roemer, Mon Jan 9 03:51:32 2023 +0100 : Added lineage DT.1 (BQ.1.1.32 with S:F494P) from #1484 with 20 designations
c0310c4 - Cornelius Roemer, Mon Jan 9 03:38:58 2023 +0100 : Added lineage CM.11 (S:R346T, S:F486S) from #1509 with 17 designations
27d5d6d - Cornelius Roemer, Mon Jan 9 03:34:16 2023 +0100 : Added recombinant XBL (XBB.1/BA.2.75/XBB.1) from #1532 with 8 designations
ce78185 - Cornelius Roemer, Mon Jan 9 02:53:12 2023 +0100 : Added lineage BF.7.15 (S:G257D) from #1358 with 500 designations
95fc3c6 - Cornelius Roemer, Sat Jan 7 13:21:51 2023 +0100 : Added lineage CH.1.1.4 (S:H681R) from #1370 with 5 designations
c786dce - Cornelius Roemer, Sat Jan 7 12:56:27 2023 +0100 : Added lineage BL.6 (S:R346T, S:V445A) from #1531 with 130 designations
ca43ba8 - Cornelius Roemer, Sat Jan 7 11:03:16 2023 +0100 : Added lineage XBB.1.8 (S:186insSGG) with 29 designations
e0508f2 - Cornelius Roemer, Sat Jan 7 10:50:51 2023 +0100 : Added lineages XBC.1.2 and XBC.1.2.1 (ORF1b:T132I) with 10/100 designations
5c205c6 - Cornelius Roemer, Sat Jan 7 10:45:09 2023 +0100 : Added lineages XBC.1.1 and XBC.1.1.1 (S:G476S) with 150/20 designations
56310a4 - Cornelius Roemer, Sat Jan 7 10:22:28 2023 +0100 : Added lineage CM.10 (S:K478T rev, S:V445A) with 36 designations
9d4e0ca - Cornelius Roemer, Sat Jan 7 10:10:11 2023 +0100 : Added lineage DS.1 (BN.1.3.1 with S:F486S & S:R403K) with 11 designations
2608402 - InfrPopGen, Fri Jan 6 18:56:43 2023 +0000 : Merge pull request #1528 from InfrPopGen/master
6982706 - InfrPopGen, Fri Jan 6 18:55:29 2023 +0000 : Added new lineage BA.5.2.48 from #1471 with 217 new sequence designations, and 0 updated
:...skipping...
2df7692 - Áine O'Toole, Mon Jan 9 09:19:02 2023 +0000 : Update init.py
cc0d14b - Cornelius Roemer, Mon Jan 9 07:04:11 2023 +0100 : Added lineage BN.1.5.1 (S:S514T) with 60 designations
e552e8e - Cornelius Roemer, Mon Jan 9 06:56:49 2023 +0100 : Added lineage XAY.1.2 (ORF1a:T3646I) with 10 designations
ca542b5 - Cornelius Roemer, Mon Jan 9 06:54:03 2023 +0100 : Added lineage XAY.3 with 11 designations
7406b00 - Cornelius Roemer, Mon Jan 9 05:48:58 2023 +0100 : Added lineage BA.5.2.49 (S:T883I) from #1480 with 78 designations
7c91675 - Cornelius Roemer, Mon Jan 9 05:26:32 2023 +0100 : Added lineage XBB.1.9.1 (S:F486P) with 9 designations
ed29b76 - Cornelius Roemer, Mon Jan 9 05:23:57 2023 +0100 : Added lineage XBB.1.9 (ORF1a:G1819S, ORF1a:T4175I) with 500 designations
7d8cc09 - Cornelius Roemer, Mon Jan 9 05:18:19 2023 +0100 : Added lineage XBB.6.1 (S:F486P) from #1459 with 20 designations
509ce7e - Cornelius Roemer, Mon Jan 9 05:16:58 2023 +0100 : Added lineage XBB.6 (C14178T) with 120 designations
11fa799 - Cornelius Roemer, Mon Jan 9 04:56:19 2023 +0100 : Added lineage BN.1.4.1 (S:G261V, S:T678I) from #1417 with 100 designations
8a456b9 - Cornelius Roemer, Mon Jan 9 04:50:00 2023 +0100 : Added lineages BM.1.1.4 (from #1438) and BM.1.1.5
e7850c6 - Cornelius Roemer, Mon Jan 9 04:40:01 2023 +0100 : Added recombinant XBM (BA.2.76/BF.3) from #1441 with 110 designations
2b98c93 - Cornelius Roemer, Mon Jan 9 04:29:45 2023 +0100 : Added lineage BA.2.3.22 (8 S AA muts) from #1462 with 11 designations
458a57c - Cornelius Roemer, Mon Jan 9 04:21:21 2023 +0100 : Added lineage CK.1.2 (S:G181V, S:346T) from #1467 with 55 designations
9c9c850 - Cornelius Roemer, Mon Jan 9 04:17:22 2023 +0100 : Added lineage CM.12 (ORF8:T12I) from #1481 with 80 designations
06dd3f5 - Cornelius Roemer, Mon Jan 9 04:06:36 2023 +0100 : Added lineage BQ.1.1.34 (S:144-, S:494P) from #1483 with 20 designations
671767a - Cornelius Roemer, Mon Jan 9 03:51:32 2023 +0100 : Added lineage DT.1 (BQ.1.1.32 with S:F494P) from #1484 with 20 designations
c0310c4 - Cornelius Roemer, Mon Jan 9 03:38:58 2023 +0100 : Added lineage CM.11 (S:R346T, S:F486S) from #1509 with 17 designations
27d5d6d - Cornelius Roemer, Mon Jan 9 03:34:16 2023 +0100 : Added recombinant XBL (XBB.1/BA.2.75/XBB.1) from #1532 with 8 designations
ce78185 - Cornelius Roemer, Mon Jan 9 02:53:12 2023 +0100 : Added lineage BF.7.15 (S:G257D) from #1358 with 500 designations
95fc3c6 - Cornelius Roemer, Sat Jan 7 13:21:51 2023 +0100 : Added lineage CH.1.1.4 (S:H681R) from #1370 with 5 designations
c786dce - Cornelius Roemer, Sat Jan 7 12:56:27 2023 +0100 : Added lineage BL.6 (S:R346T, S:V445A) from #1531 with 130 designations
ca43ba8 - Cornelius Roemer, Sat Jan 7 11:03:16 2023 +0100 : Added lineage XBB.1.8 (S:186insSGG) with 29 designations
e0508f2 - Cornelius Roemer, Sat Jan 7 10:50:51 2023 +0100 : Added lineages XBC.1.2 and XBC.1.2.1 (ORF1b:T132I) with 10/100 designations
5c205c6 - Cornelius Roemer, Sat Jan 7 10:45:09 2023 +0100 : Added lineages XBC.1.1 and XBC.1.1.1 (S:G476S) with 150/20 designations
56310a4 - Cornelius Roemer, Sat Jan 7 10:22:28 2023 +0100 : Added lineage CM.10 (S:K478T rev, S:V445A) with 36 designations
9d4e0ca - Cornelius Roemer, Sat Jan 7 10:10:11 2023 +0100 : Added lineage DS.1 (BN.1.3.1 with S:F486S & S:R403K) with 11 designations
2608402 - InfrPopGen, Fri Jan 6 18:56:43 2023 +0000 : Merge pull request #1528 from InfrPopGen/master
6982706 - InfrPopGen, Fri Jan 6 18:55:29 2023 +0000 : Added new lineage BA.5.2.48 from #1471 with 217 new sequence designations, and 0 updated
cdbb3a8 - InfrPopGen, Fri Jan 6 17:30:30 2023 +0000 : Merge pull request #1527 from InfrPopGen/master
:...skipping...
2df7692 - Áine O'Toole, Mon Jan 9 09:19:02 2023 +0000 : Update init.py
cc0d14b - Cornelius Roemer, Mon Jan 9 07:04:11 2023 +0100 : Added lineage BN.1.5.1 (S:S514T) with 60 designations
e552e8e - Cornelius Roemer, Mon Jan 9 06:56:49 2023 +0100 : Added lineage XAY.1.2 (ORF1a:T3646I) with 10 designations
ca542b5 - Cornelius Roemer, Mon Jan 9 06:54:03 2023 +0100 : Added lineage XAY.3 with 11 designations
7406b00 - Cornelius Roemer, Mon Jan 9 05:48:58 2023 +0100 : Added lineage BA.5.2.49 (S:T883I) from #1480 with 78 designations
7c91675 - Cornelius Roemer, Mon Jan 9 05:26:32 2023 +0100 : Added lineage XBB.1.9.1 (S:F486P) with 9 designations
ed29b76 - Cornelius Roemer, Mon Jan 9 05:23:57 2023 +0100 : Added lineage XBB.1.9 (ORF1a:G1819S, ORF1a:T4175I) with 500 designations
7d8cc09 - Cornelius Roemer, Mon Jan 9 05:18:19 2023 +0100 : Added lineage XBB.6.1 (S:F486P) from #1459 with 20 designations
509ce7e - Cornelius Roemer, Mon Jan 9 05:16:58 2023 +0100 : Added lineage XBB.6 (C14178T) with 120 designations
11fa799 - Cornelius Roemer, Mon Jan 9 04:56:19 2023 +0100 : Added lineage BN.1.4.1 (S:G261V, S:T678I) from #1417 with 100 designations
8a456b9 - Cornelius Roemer, Mon Jan 9 04:50:00 2023 +0100 : Added lineages BM.1.1.4 (from #1438) and BM.1.1.5
e7850c6 - Cornelius Roemer, Mon Jan 9 04:40:01 2023 +0100 : Added recombinant XBM (BA.2.76/BF.3) from #1441 with 110 designations
2b98c93 - Cornelius Roemer, Mon Jan 9 04:29:45 2023 +0100 : Added lineage BA.2.3.22 (8 S AA muts) from #1462 with 11 designations
458a57c - Cornelius Roemer, Mon Jan 9 04:21:21 2023 +0100 : Added lineage CK.1.2 (S:G181V, S:346T) from #1467 with 55 designations
9c9c850 - Cornelius Roemer, Mon Jan 9 04:17:22 2023 +0100 : Added lineage CM.12 (ORF8:T12I) from #1481 with 80 designations
06dd3f5 - Cornelius Roemer, Mon Jan 9 04:06:36 2023 +0100 : Added lineage BQ.1.1.34 (S:144-, S:494P) from #1483 with 20 designations
671767a - Cornelius Roemer, Mon Jan 9 03:51:32 2023 +0100 : Added lineage DT.1 (BQ.1.1.32 with S:F494P) from #1484 with 20 designations
c0310c4 - Cornelius Roemer, Mon Jan 9 03:38:58 2023 +0100 : Added lineage CM.11 (S:R346T, S:F486S) from #1509 with 17 designations
27d5d6d - Cornelius Roemer, Mon Jan 9 03:34:16 2023 +0100 : Added recombinant XBL (XBB.1/BA.2.75/XBB.1) from #1532 with 8 designations
ce78185 - Cornelius Roemer, Mon Jan 9 02:53:12 2023 +0100 : Added lineage BF.7.15 (S:G257D) from #1358 with 500 designations
95fc3c6 - Cornelius Roemer, Sat Jan 7 13:21:51 2023 +0100 : Added lineage CH.1.1.4 (S:H681R) from #1370 with 5 designations
c786dce - Cornelius Roemer, Sat Jan 7 12:56:27 2023 +0100 : Added lineage BL.6 (S:R346T, S:V445A) from #1531 with 130 designations
ca43ba8 - Cornelius Roemer, Sat Jan 7 11:03:16 2023 +0100 : Added lineage XBB.1.8 (S:186insSGG) with 29 designations
e0508f2 - Cornelius Roemer, Sat Jan 7 10:50:51 2023 +0100 : Added lineages XBC.1.2 and XBC.1.2.1 (ORF1b:T132I) with 10/100 designations
5c205c6 - Cornelius Roemer, Sat Jan 7 10:45:09 2023 +0100 : Added lineages XBC.1.1 and XBC.1.1.1 (S:G476S) with 150/20 designations
56310a4 - Cornelius Roemer, Sat Jan 7 10:22:28 2023 +0100 : Added lineage CM.10 (S:K478T rev, S:V445A) with 36 designations
9d4e0ca - Cornelius Roemer, Sat Jan 7 10:10:11 2023 +0100 : Added lineage DS.1 (BN.1.3.1 with S:F486S & S:R403K) with 11 designations
2608402 - InfrPopGen, Fri Jan 6 18:56:43 2023 +0000 : Merge pull request #1528 from InfrPopGen/master
6982706 - InfrPopGen, Fri Jan 6 18:55:29 2023 +0000 : Added new lineage BA.5.2.48 from #1471 with 217 new sequence designations, and 0 updated
cdbb3a8 - InfrPopGen, Fri Jan 6 17:30:30 2023 +0000 : Merge pull request #1527 from InfrPopGen/master
e4ffd07 - InfrPopGen, Fri Jan 6 17:28:36 2023 +0000 : Added new lineage BF.7.14 from #1470 with 224 new sequence designations, and 0 updated
:...skipping...
2df7692 - Áine O'Toole, Mon Jan 9 09:19:02 2023 +0000 : Update init.py
cc0d14b - Cornelius Roemer, Mon Jan 9 07:04:11 2023 +0100 : Added lineage BN.1.5.1 (S:S514T) with 60 designations
e552e8e - Cornelius Roemer, Mon Jan 9 06:56:49 2023 +0100 : Added lineage XAY.1.2 (ORF1a:T3646I) with 10 designations
ca542b5 - Cornelius Roemer, Mon Jan 9 06:54:03 2023 +0100 : Added lineage XAY.3 with 11 designations
7406b00 - Cornelius Roemer, Mon Jan 9 05:48:58 2023 +0100 : Added lineage BA.5.2.49 (S:T883I) from #1480 with 78 designations
7c91675 - Cornelius Roemer, Mon Jan 9 05:26:32 2023 +0100 : Added lineage XBB.1.9.1 (S:F486P) with 9 designations
ed29b76 - Cornelius Roemer, Mon Jan 9 05:23:57 2023 +0100 : Added lineage XBB.1.9 (ORF1a:G1819S, ORF1a:T4175I) with 500 designations
7d8cc09 - Cornelius Roemer, Mon Jan 9 05:18:19 2023 +0100 : Added lineage XBB.6.1 (S:F486P) from #1459 with 20 designations
509ce7e - Cornelius Roemer, Mon Jan 9 05:16:58 2023 +0100 : Added lineage XBB.6 (C14178T) with 120 designations
11fa799 - Cornelius Roemer, Mon Jan 9 04:56:19 2023 +0100 : Added lineage BN.1.4.1 (S:G261V, S:T678I) from #1417 with 100 designations
8a456b9 - Cornelius Roemer, Mon Jan 9 04:50:00 2023 +0100 : Added lineages BM.1.1.4 (from #1438) and BM.1.1.5
e7850c6 - Cornelius Roemer, Mon Jan 9 04:40:01 2023 +0100 : Added recombinant XBM (BA.2.76/BF.3) from #1441 with 110 designations
2b98c93 - Cornelius Roemer, Mon Jan 9 04:29:45 2023 +0100 : Added lineage BA.2.3.22 (8 S AA muts) from #1462 with 11 designations
458a57c - Cornelius Roemer, Mon Jan 9 04:21:21 2023 +0100 : Added lineage CK.1.2 (S:G181V, S:346T) from #1467 with 55 designations
9c9c850 - Cornelius Roemer, Mon Jan 9 04:17:22 2023 +0100 : Added lineage CM.12 (ORF8:T12I) from #1481 with 80 designations
06dd3f5 - Cornelius Roemer, Mon Jan 9 04:06:36 2023 +0100 : Added lineage BQ.1.1.34 (S:144-, S:494P) from #1483 with 20 designations
671767a - Cornelius Roemer, Mon Jan 9 03:51:32 2023 +0100 : Added lineage DT.1 (BQ.1.1.32 with S:F494P) from #1484 with 20 designations
c0310c4 - Cornelius Roemer, Mon Jan 9 03:38:58 2023 +0100 : Added lineage CM.11 (S:R346T, S:F486S) from #1509 with 17 designations
27d5d6d - Cornelius Roemer, Mon Jan 9 03:34:16 2023 +0100 : Added recombinant XBL (XBB.1/BA.2.75/XBB.1) from #1532 with 8 designations
ce78185 - Cornelius Roemer, Mon Jan 9 02:53:12 2023 +0100 : Added lineage BF.7.15 (S:G257D) from #1358 with 500 designations
95fc3c6 - Cornelius Roemer, Sat Jan 7 13:21:51 2023 +0100 : Added lineage CH.1.1.4 (S:H681R) from #1370 with 5 designations
c786dce - Cornelius Roemer, Sat Jan 7 12:56:27 2023 +0100 : Added lineage BL.6 (S:R346T, S:V445A) from #1531 with 130 designations
ca43ba8 - Cornelius Roemer, Sat Jan 7 11:03:16 2023 +0100 : Added lineage XBB.1.8 (S:186insSGG) with 29 designations
e0508f2 - Cornelius Roemer, Sat Jan 7 10:50:51 2023 +0100 : Added lineages XBC.1.2 and XBC.1.2.1 (ORF1b:T132I) with 10/100 designations
5c205c6 - Cornelius Roemer, Sat Jan 7 10:45:09 2023 +0100 : Added lineages XBC.1.1 and XBC.1.1.1 (S:G476S) with 150/20 designations
56310a4 - Cornelius Roemer, Sat Jan 7 10:22:28 2023 +0100 : Added lineage CM.10 (S:K478T rev, S:V445A) with 36 designations
9d4e0ca - Cornelius Roemer, Sat Jan 7 10:10:11 2023 +0100 : Added lineage DS.1 (BN.1.3.1 with S:F486S & S:R403K) with 11 designations
2608402 - InfrPopGen, Fri Jan 6 18:56:43 2023 +0000 : Merge pull request #1528 from InfrPopGen/master
6982706 - InfrPopGen, Fri Jan 6 18:55:29 2023 +0000 : Added new lineage BA.5.2.48 from #1471 with 217 new sequence designations, and 0 updated
cdbb3a8 - InfrPopGen, Fri Jan 6 17:30:30 2023 +0000 : Merge pull request #1527 from InfrPopGen/master
e4ffd07 - InfrPopGen, Fri Jan 6 17:28:36 2023 +0000 : Added new lineage BF.7.14 from #1470 with 224 new sequence designations, and 0 updated
2ab03d6 - Angie Hinrichs, Thu Jan 5 14:05:54 2023 -0800 : Merge pull request #1521 from ciscorucinski/master
:...skipping...
2df7692 - Áine O'Toole, Mon Jan 9 09:19:02 2023 +0000 : Update init.py
cc0d14b - Cornelius Roemer, Mon Jan 9 07:04:11 2023 +0100 : Added lineage BN.1.5.1 (S:S514T) with 60 designations
e552e8e - Cornelius Roemer, Mon Jan 9 06:56:49 2023 +0100 : Added lineage XAY.1.2 (ORF1a:T3646I) with 10 designations
ca542b5 - Cornelius Roemer, Mon Jan 9 06:54:03 2023 +0100 : Added lineage XAY.3 with 11 designations
7406b00 - Cornelius Roemer, Mon Jan 9 05:48:58 2023 +0100 : Added lineage BA.5.2.49 (S:T883I) from #1480 with 78 designations
7c91675 - Cornelius Roemer, Mon Jan 9 05:26:32 2023 +0100 : Added lineage XBB.1.9.1 (S:F486P) with 9 designations
ed29b76 - Cornelius Roemer, Mon Jan 9 05:23:57 2023 +0100 : Added lineage XBB.1.9 (ORF1a:G1819S, ORF1a:T4175I) with 500 designations
7d8cc09 - Cornelius Roemer, Mon Jan 9 05:18:19 2023 +0100 : Added lineage XBB.6.1 (S:F486P) from #1459 with 20 designations
509ce7e - Cornelius Roemer, Mon Jan 9 05:16:58 2023 +0100 : Added lineage XBB.6 (C14178T) with 120 designations
11fa799 - Cornelius Roemer, Mon Jan 9 04:56:19 2023 +0100 : Added lineage BN.1.4.1 (S:G261V, S:T678I) from #1417 with 100 designations
8a456b9 - Cornelius Roemer, Mon Jan 9 04:50:00 2023 +0100 : Added lineages BM.1.1.4 (from #1438) and BM.1.1.5
e7850c6 - Cornelius Roemer, Mon Jan 9 04:40:01 2023 +0100 : Added recombinant XBM (BA.2.76/BF.3) from #1441 with 110 designations
2b98c93 - Cornelius Roemer, Mon Jan 9 04:29:45 2023 +0100 : Added lineage BA.2.3.22 (8 S AA muts) from #1462 with 11 designations
458a57c - Cornelius Roemer, Mon Jan 9 04:21:21 2023 +0100 : Added lineage CK.1.2 (S:G181V, S:346T) from #1467 with 55 designations
9c9c850 - Cornelius Roemer, Mon Jan 9 04:17:22 2023 +0100 : Added lineage CM.12 (ORF8:T12I) from #1481 with 80 designations
06dd3f5 - Cornelius Roemer, Mon Jan 9 04:06:36 2023 +0100 : Added lineage BQ.1.1.34 (S:144-, S:494P) from #1483 with 20 designations
671767a - Cornelius Roemer, Mon Jan 9 03:51:32 2023 +0100 : Added lineage DT.1 (BQ.1.1.32 with S:F494P) from #1484 with 20 designations
c0310c4 - Cornelius Roemer, Mon Jan 9 03:38:58 2023 +0100 : Added lineage CM.11 (S:R346T, S:F486S) from #1509 with 17 designations
27d5d6d - Cornelius Roemer, Mon Jan 9 03:34:16 2023 +0100 : Added recombinant XBL (XBB.1/BA.2.75/XBB.1) from #1532 with 8 designations
ce78185 - Cornelius Roemer, Mon Jan 9 02:53:12 2023 +0100 : Added lineage BF.7.15 (S:G257D) from #1358 with 500 designations
95fc3c6 - Cornelius Roemer, Sat Jan 7 13:21:51 2023 +0100 : Added lineage CH.1.1.4 (S:H681R) from #1370 with 5 designations
c786dce - Cornelius Roemer, Sat Jan 7 12:56:27 2023 +0100 : Added lineage BL.6 (S:R346T, S:V445A) from #1531 with 130 designations
ca43ba8 - Cornelius Roemer, Sat Jan 7 11:03:16 2023 +0100 : Added lineage XBB.1.8 (S:186insSGG) with 29 designations
e0508f2 - Cornelius Roemer, Sat Jan 7 10:50:51 2023 +0100 : Added lineages XBC.1.2 and XBC.1.2.1 (ORF1b:T132I) with 10/100 designations
5c205c6 - Cornelius Roemer, Sat Jan 7 10:45:09 2023 +0100 : Added lineages XBC.1.1 and XBC.1.1.1 (S:G476S) with 150/20 designations
56310a4 - Cornelius Roemer, Sat Jan 7 10:22:28 2023 +0100 : Added lineage CM.10 (S:K478T rev, S:V445A) with 36 designations
9d4e0ca - Cornelius Roemer, Sat Jan 7 10:10:11 2023 +0100 : Added lineage DS.1 (BN.1.3.1 with S:F486S & S:R403K) with 11 designations
2608402 - InfrPopGen, Fri Jan 6 18:56:43 2023 +0000 : Merge pull request #1528 from InfrPopGen/master
6982706 - InfrPopGen, Fri Jan 6 18:55:29 2023 +0000 : Added new lineage BA.5.2.48 from #1471 with 217 new sequence designations, and 0 updated
cdbb3a8 - InfrPopGen, Fri Jan 6 17:30:30 2023 +0000 : Merge pull request #1527 from InfrPopGen/master
e4ffd07 - InfrPopGen, Fri Jan 6 17:28:36 2023 +0000 : Added new lineage BF.7.14 from #1470 with 224 new sequence designations, and 0 updated
2ab03d6 - Angie Hinrichs, Thu Jan 5 14:05:54 2023 -0800 : Merge pull request #1521 from ciscorucinski/master
b9c217d - ciscorucinski, Fri Jan 6 06:29:16 2023 +0900 : Fixed spelling irregularities throughout document
:...skipping...
2df7692 - Áine O'Toole, Mon Jan 9 09:19:02 2023 +0000 : Update init.py
cc0d14b - Cornelius Roemer, Mon Jan 9 07:04:11 2023 +0100 : Added lineage BN.1.5.1 (S:S514T) with 60 designations
e552e8e - Cornelius Roemer, Mon Jan 9 06:56:49 2023 +0100 : Added lineage XAY.1.2 (ORF1a:T3646I) with 10 designations
ca542b5 - Cornelius Roemer, Mon Jan 9 06:54:03 2023 +0100 : Added lineage XAY.3 with 11 designations
7406b00 - Cornelius Roemer, Mon Jan 9 05:48:58 2023 +0100 : Added lineage BA.5.2.49 (S:T883I) from #1480 with 78 designations
7c91675 - Cornelius Roemer, Mon Jan 9 05:26:32 2023 +0100 : Added lineage XBB.1.9.1 (S:F486P) with 9 designations
ed29b76 - Cornelius Roemer, Mon Jan 9 05:23:57 2023 +0100 : Added lineage XBB.1.9 (ORF1a:G1819S, ORF1a:T4175I) with 500 designations
7d8cc09 - Cornelius Roemer, Mon Jan 9 05:18:19 2023 +0100 : Added lineage XBB.6.1 (S:F486P) from #1459 with 20 designations
509ce7e - Cornelius Roemer, Mon Jan 9 05:16:58 2023 +0100 : Added lineage XBB.6 (C14178T) with 120 designations
11fa799 - Cornelius Roemer, Mon Jan 9 04:56:19 2023 +0100 : Added lineage BN.1.4.1 (S:G261V, S:T678I) from #1417 with 100 designations
8a456b9 - Cornelius Roemer, Mon Jan 9 04:50:00 2023 +0100 : Added lineages BM.1.1.4 (from #1438) and BM.1.1.5
e7850c6 - Cornelius Roemer, Mon Jan 9 04:40:01 2023 +0100 : Added recombinant XBM (BA.2.76/BF.3) from #1441 with 110 designations
2b98c93 - Cornelius Roemer, Mon Jan 9 04:29:45 2023 +0100 : Added lineage BA.2.3.22 (8 S AA muts) from #1462 with 11 designations
458a57c - Cornelius Roemer, Mon Jan 9 04:21:21 2023 +0100 : Added lineage CK.1.2 (S:G181V, S:346T) from #1467 with 55 designations
9c9c850 - Cornelius Roemer, Mon Jan 9 04:17:22 2023 +0100 : Added lineage CM.12 (ORF8:T12I) from #1481 with 80 designations
06dd3f5 - Cornelius Roemer, Mon Jan 9 04:06:36 2023 +0100 : Added lineage BQ.1.1.34 (S:144-, S:494P) from #1483 with 20 designations
671767a - Cornelius Roemer, Mon Jan 9 03:51:32 2023 +0100 : Added lineage DT.1 (BQ.1.1.32 with S:F494P) from #1484 with 20 designations
c0310c4 - Cornelius Roemer, Mon Jan 9 03:38:58 2023 +0100 : Added lineage CM.11 (S:R346T, S:F486S) from #1509 with 17 designations
27d5d6d - Cornelius Roemer, Mon Jan 9 03:34:16 2023 +0100 : Added recombinant XBL (XBB.1/BA.2.75/XBB.1) from #1532 with 8 designations
ce78185 - Cornelius Roemer, Mon Jan 9 02:53:12 2023 +0100 : Added lineage BF.7.15 (S:G257D) from #1358 with 500 designations
95fc3c6 - Cornelius Roemer, Sat Jan 7 13:21:51 2023 +0100 : Added lineage CH.1.1.4 (S:H681R) from #1370 with 5 designations
c786dce - Cornelius Roemer, Sat Jan 7 12:56:27 2023 +0100 : Added lineage BL.6 (S:R346T, S:V445A) from #1531 with 130 designations
ca43ba8 - Cornelius Roemer, Sat Jan 7 11:03:16 2023 +0100 : Added lineage XBB.1.8 (S:186insSGG) with 29 designations
e0508f2 - Cornelius Roemer, Sat Jan 7 10:50:51 2023 +0100 : Added lineages XBC.1.2 and XBC.1.2.1 (ORF1b:T132I) with 10/100 designations
5c205c6 - Cornelius Roemer, Sat Jan 7 10:45:09 2023 +0100 : Added lineages XBC.1.1 and XBC.1.1.1 (S:G476S) with 150/20 designations
56310a4 - Cornelius Roemer, Sat Jan 7 10:22:28 2023 +0100 : Added lineage CM.10 (S:K478T rev, S:V445A) with 36 designations
9d4e0ca - Cornelius Roemer, Sat Jan 7 10:10:11 2023 +0100 : Added lineage DS.1 (BN.1.3.1 with S:F486S & S:R403K) with 11 designations
2608402 - InfrPopGen, Fri Jan 6 18:56:43 2023 +0000 : Merge pull request #1528 from InfrPopGen/master
6982706 - InfrPopGen, Fri Jan 6 18:55:29 2023 +0000 : Added new lineage BA.5.2.48 from #1471 with 217 new sequence designations, and 0 updated
cdbb3a8 - InfrPopGen, Fri Jan 6 17:30:30 2023 +0000 : Merge pull request #1527 from InfrPopGen/master
e4ffd07 - InfrPopGen, Fri Jan 6 17:28:36 2023 +0000 : Added new lineage BF.7.14 from #1470 with 224 new sequence designations, and 0 updated
2ab03d6 - Angie Hinrichs, Thu Jan 5 14:05:54 2023 -0800 : Merge pull request #1521 from ciscorucinski/master
b9c217d - ciscorucinski, Fri Jan 6 06:29:16 2023 +0900 : Fixed spelling irregularities throughout document
d2a934b - ciscorucinski, Fri Jan 6 06:12:33 2023 +0900 : Fixed spelling irregularities throughout document
:...skipping...
2df7692 - Áine O'Toole, Mon Jan 9 09:19:02 2023 +0000 : Update init.py
cc0d14b - Cornelius Roemer, Mon Jan 9 07:04:11 2023 +0100 : Added lineage BN.1.5.1 (S:S514T) with 60 designations
e552e8e - Cornelius Roemer, Mon Jan 9 06:56:49 2023 +0100 : Added lineage XAY.1.2 (ORF1a:T3646I) with 10 designations
ca542b5 - Cornelius Roemer, Mon Jan 9 06:54:03 2023 +0100 : Added lineage XAY.3 with 11 designations
7406b00 - Cornelius Roemer, Mon Jan 9 05:48:58 2023 +0100 : Added lineage BA.5.2.49 (S:T883I) from #1480 with 78 designations
7c91675 - Cornelius Roemer, Mon Jan 9 05:26:32 2023 +0100 : Added lineage XBB.1.9.1 (S:F486P) with 9 designations
ed29b76 - Cornelius Roemer, Mon Jan 9 05:23:57 2023 +0100 : Added lineage XBB.1.9 (ORF1a:G1819S, ORF1a:T4175I) with 500 designations
7d8cc09 - Cornelius Roemer, Mon Jan 9 05:18:19 2023 +0100 : Added lineage XBB.6.1 (S:F486P) from #1459 with 20 designations
509ce7e - Cornelius Roemer, Mon Jan 9 05:16:58 2023 +0100 : Added lineage XBB.6 (C14178T) with 120 designations
11fa799 - Cornelius Roemer, Mon Jan 9 04:56:19 2023 +0100 : Added lineage BN.1.4.1 (S:G261V, S:T678I) from #1417 with 100 designations
8a456b9 - Cornelius Roemer, Mon Jan 9 04:50:00 2023 +0100 : Added lineages BM.1.1.4 (from #1438) and BM.1.1.5
e7850c6 - Cornelius Roemer, Mon Jan 9 04:40:01 2023 +0100 : Added recombinant XBM (BA.2.76/BF.3) from #1441 with 110 designations
2b98c93 - Cornelius Roemer, Mon Jan 9 04:29:45 2023 +0100 : Added lineage BA.2.3.22 (8 S AA muts) from #1462 with 11 designations
458a57c - Cornelius Roemer, Mon Jan 9 04:21:21 2023 +0100 : Added lineage CK.1.2 (S:G181V, S:346T) from #1467 with 55 designations
9c9c850 - Cornelius Roemer, Mon Jan 9 04:17:22 2023 +0100 : Added lineage CM.12 (ORF8:T12I) from #1481 with 80 designations
06dd3f5 - Cornelius Roemer, Mon Jan 9 04:06:36 2023 +0100 : Added lineage BQ.1.1.34 (S:144-, S:494P) from #1483 with 20 designations
671767a - Cornelius Roemer, Mon Jan 9 03:51:32 2023 +0100 : Added lineage DT.1 (BQ.1.1.32 with S:F494P) from #1484 with 20 designations
c0310c4 - Cornelius Roemer, Mon Jan 9 03:38:58 2023 +0100 : Added lineage CM.11 (S:R346T, S:F486S) from #1509 with 17 designations
27d5d6d - Cornelius Roemer, Mon Jan 9 03:34:16 2023 +0100 : Added recombinant XBL (XBB.1/BA.2.75/XBB.1) from #1532 with 8 designations
ce78185 - Cornelius Roemer, Mon Jan 9 02:53:12 2023 +0100 : Added lineage BF.7.15 (S:G257D) from #1358 with 500 designations
95fc3c6 - Cornelius Roemer, Sat Jan 7 13:21:51 2023 +0100 : Added lineage CH.1.1.4 (S:H681R) from #1370 with 5 designations
c786dce - Cornelius Roemer, Sat Jan 7 12:56:27 2023 +0100 : Added lineage BL.6 (S:R346T, S:V445A) from #1531 with 130 designations
ca43ba8 - Cornelius Roemer, Sat Jan 7 11:03:16 2023 +0100 : Added lineage XBB.1.8 (S:186insSGG) with 29 designations
e0508f2 - Cornelius Roemer, Sat Jan 7 10:50:51 2023 +0100 : Added lineages XBC.1.2 and XBC.1.2.1 (ORF1b:T132I) with 10/100 designations
5c205c6 - Cornelius Roemer, Sat Jan 7 10:45:09 2023 +0100 : Added lineages XBC.1.1 and XBC.1.1.1 (S:G476S) with 150/20 designations
56310a4 - Cornelius Roemer, Sat Jan 7 10:22:28 2023 +0100 : Added lineage CM.10 (S:K478T rev, S:V445A) with 36 designations
9d4e0ca - Cornelius Roemer, Sat Jan 7 10:10:11 2023 +0100 : Added lineage DS.1 (BN.1.3.1 with S:F486S & S:R403K) with 11 designations
2608402 - InfrPopGen, Fri Jan 6 18:56:43 2023 +0000 : Merge pull request #1528 from InfrPopGen/master
6982706 - InfrPopGen, Fri Jan 6 18:55:29 2023 +0000 : Added new lineage BA.5.2.48 from #1471 with 217 new sequence designations, and 0 updated
cdbb3a8 - InfrPopGen, Fri Jan 6 17:30:30 2023 +0000 : Merge pull request #1527 from InfrPopGen/master
e4ffd07 - InfrPopGen, Fri Jan 6 17:28:36 2023 +0000 : Added new lineage BF.7.14 from #1470 with 224 new sequence designations, and 0 updated
2ab03d6 - Angie Hinrichs, Thu Jan 5 14:05:54 2023 -0800 : Merge pull request #1521 from ciscorucinski/master
b9c217d - ciscorucinski, Fri Jan 6 06:29:16 2023 +0900 : Fixed spelling irregularities throughout document
d2a934b - ciscorucinski, Fri Jan 6 06:12:33 2023 +0900 : Fixed spelling irregularities throughout document
b3086d8 - Angie Hinrichs, Thu Jan 5 12:32:57 2023 -0800 : Merge pull request #1520 from AngieHinrichs/master
:...skipping...
2df7692 - Áine O'Toole, Mon Jan 9 09:19:02 2023 +0000 : Update init.py
cc0d14b - Cornelius Roemer, Mon Jan 9 07:04:11 2023 +0100 : Added lineage BN.1.5.1 (S:S514T) with 60 designations
e552e8e - Cornelius Roemer, Mon Jan 9 06:56:49 2023 +0100 : Added lineage XAY.1.2 (ORF1a:T3646I) with 10 designations
ca542b5 - Cornelius Roemer, Mon Jan 9 06:54:03 2023 +0100 : Added lineage XAY.3 with 11 designations
7406b00 - Cornelius Roemer, Mon Jan 9 05:48:58 2023 +0100 : Added lineage BA.5.2.49 (S:T883I) from #1480 with 78 designations
7c91675 - Cornelius Roemer, Mon Jan 9 05:26:32 2023 +0100 : Added lineage XBB.1.9.1 (S:F486P) with 9 designations
ed29b76 - Cornelius Roemer, Mon Jan 9 05:23:57 2023 +0100 : Added lineage XBB.1.9 (ORF1a:G1819S, ORF1a:T4175I) with 500 designations
7d8cc09 - Cornelius Roemer, Mon Jan 9 05:18:19 2023 +0100 : Added lineage XBB.6.1 (S:F486P) from #1459 with 20 designations
509ce7e - Cornelius Roemer, Mon Jan 9 05:16:58 2023 +0100 : Added lineage XBB.6 (C14178T) with 120 designations
11fa799 - Cornelius Roemer, Mon Jan 9 04:56:19 2023 +0100 : Added lineage BN.1.4.1 (S:G261V, S:T678I) from #1417 with 100 designations
8a456b9 - Cornelius Roemer, Mon Jan 9 04:50:00 2023 +0100 : Added lineages BM.1.1.4 (from #1438) and BM.1.1.5
e7850c6 - Cornelius Roemer, Mon Jan 9 04:40:01 2023 +0100 : Added recombinant XBM (BA.2.76/BF.3) from #1441 with 110 designations
2b98c93 - Cornelius Roemer, Mon Jan 9 04:29:45 2023 +0100 : Added lineage BA.2.3.22 (8 S AA muts) from #1462 with 11 designations
458a57c - Cornelius Roemer, Mon Jan 9 04:21:21 2023 +0100 : Added lineage CK.1.2 (S:G181V, S:346T) from #1467 with 55 designations
9c9c850 - Cornelius Roemer, Mon Jan 9 04:17:22 2023 +0100 : Added lineage CM.12 (ORF8:T12I) from #1481 with 80 designations
06dd3f5 - Cornelius Roemer, Mon Jan 9 04:06:36 2023 +0100 : Added lineage BQ.1.1.34 (S:144-, S:494P) from #1483 with 20 designations
671767a - Cornelius Roemer, Mon Jan 9 03:51:32 2023 +0100 : Added lineage DT.1 (BQ.1.1.32 with S:F494P) from #1484 with 20 designations
c0310c4 - Cornelius Roemer, Mon Jan 9 03:38:58 2023 +0100 : Added lineage CM.11 (S:R346T, S:F486S) from #1509 with 17 designations
27d5d6d - Cornelius Roemer, Mon Jan 9 03:34:16 2023 +0100 : Added recombinant XBL (XBB.1/BA.2.75/XBB.1) from #1532 with 8 designations
ce78185 - Cornelius Roemer, Mon Jan 9 02:53:12 2023 +0100 : Added lineage BF.7.15 (S:G257D) from #1358 with 500 designations
95fc3c6 - Cornelius Roemer, Sat Jan 7 13:21:51 2023 +0100 : Added lineage CH.1.1.4 (S:H681R) from #1370 with 5 designations
c786dce - Cornelius Roemer, Sat Jan 7 12:56:27 2023 +0100 : Added lineage BL.6 (S:R346T, S:V445A) from #1531 with 130 designations
ca43ba8 - Cornelius Roemer, Sat Jan 7 11:03:16 2023 +0100 : Added lineage XBB.1.8 (S:186insSGG) with 29 designations
e0508f2 - Cornelius Roemer, Sat Jan 7 10:50:51 2023 +0100 : Added lineages XBC.1.2 and XBC.1.2.1 (ORF1b:T132I) with 10/100 designations
5c205c6 - Cornelius Roemer, Sat Jan 7 10:45:09 2023 +0100 : Added lineages XBC.1.1 and XBC.1.1.1 (S:G476S) with 150/20 designations
56310a4 - Cornelius Roemer, Sat Jan 7 10:22:28 2023 +0100 : Added lineage CM.10 (S:K478T rev, S:V445A) with 36 designations
9d4e0ca - Cornelius Roemer, Sat Jan 7 10:10:11 2023 +0100 : Added lineage DS.1 (BN.1.3.1 with S:F486S & S:R403K) with 11 designations
2608402 - InfrPopGen, Fri Jan 6 18:56:43 2023 +0000 : Merge pull request #1528 from InfrPopGen/master
6982706 - InfrPopGen, Fri Jan 6 18:55:29 2023 +0000 : Added new lineage BA.5.2.48 from #1471 with 217 new sequence designations, and 0 updated
cdbb3a8 - InfrPopGen, Fri Jan 6 17:30:30 2023 +0000 : Merge pull request #1527 from InfrPopGen/master
e4ffd07 - InfrPopGen, Fri Jan 6 17:28:36 2023 +0000 : Added new lineage BF.7.14 from #1470 with 224 new sequence designations, and 0 updated
2ab03d6 - Angie Hinrichs, Thu Jan 5 14:05:54 2023 -0800 : Merge pull request #1521 from ciscorucinski/master
b9c217d - ciscorucinski, Fri Jan 6 06:29:16 2023 +0900 : Fixed spelling irregularities throughout document
d2a934b - ciscorucinski, Fri Jan 6 06:12:33 2023 +0900 : Fixed spelling irregularities throughout document
b3086d8 - Angie Hinrichs, Thu Jan 5 12:32:57 2023 -0800 : Merge pull request #1520 from AngieHinrichs/master
2dfff49 - Angie Hinrichs, Thu Jan 5 12:22:12 2023 -0800 : Fixing duplicates, spelling & punctuation irregularities found by @PeterSlickers in #1519
ab55b5a - Angie Hinrichs, Wed Jan 4 08:03:49 2023 -0800 : Merge pull request #1515 from ciscorucinski/master
d296442 - ciscorucinski, Wed Jan 4 23:11:46 2023 +0900 : Added DR alias
3106d16 - InfrPopGen, Tue Jan 3 19:10:22 2023 +0000 : Merge pull request #1513 from InfrPopGen/master
23c55f7 - InfrPopGen, Tue Jan 3 19:08:54 2023 +0000 : State Change: lineage DR.1, replaces BQ.1.1.33 from #1402 (withdrawn)
7567d7b - InfrPopGen, Sun Jan 1 16:13:26 2023 +0000 : Merge pull request #1508 from InfrPopGen/master
a2ccb9c - InfrPopGen, Sun Jan 1 16:11:39 2023 +0000 : Added new lineage DQ.1 from #1496 with 0 new sequence designations, and 155 updated from BA.5.2.47
817c6fb - InfrPopGen, Sun Jan 1 15:54:40 2023 +0000 : Merge pull request #1507 from InfrPopGen/master
d2eedec - InfrPopGen, Sun Jan 1 15:53:45 2023 +0000 : Added new lineage BA.5.2.47 from #1496 with 972 new sequence designations, and 0 updated
5ef3859 - InfrPopGen, Sun Jan 1 11:51:10 2023 +0000 : Merge pull request #1506 from InfrPopGen/master
9e2c653 - InfrPopGen, Sun Jan 1 11:49:22 2023 +0000 : Added new lineage DF.1.1 from #1494 with 95 new sequence designations, and 0 updated
a9bfe51 - InfrPopGen, Sat Dec 31 17:00:45 2022 +0000 : Merge pull request #1502 from InfrPopGen/master
3fbd689 - InfrPopGen, Sat Dec 31 16:59:45 2022 +0000 : Added new lineage BQ.1.1.33 from #1402 with 27 new sequence designations, and 0 updated
3e08031 - InfrPopGen, Sat Dec 31 16:46:42 2022 +0000 : Merge pull request #1501 from InfrPopGen/master
352e9dc - InfrPopGen, Sat Dec 31 16:45:29 2022 +0000 : Added new lineage BQ.1.1.32 from #1402 with 218 new sequence designations, and 0 updated
0ead6b8 - InfrPopGen, Sat Dec 31 15:10:04 2022 +0000 : Merge pull request #1500 from InfrPopGen/master
3896f7e - InfrPopGen, Sat Dec 31 15:08:52 2022 +0000 : Added new lineage BQ.1.28 from #1415 with 51 new sequence designations, and 0 updated
bc38158 - InfrPopGen, Fri Dec 30 16:51:32 2022 +0000 : Merge pull request #1495 from InfrPopGen/master
78b0135 - InfrPopGen, Fri Dec 30 16:50:39 2022 +0000 : Added new lineage BA.5.2.46 from #1446 with 21 new sequence designations, and 0 updated
4ad4167 - InfrPopGen, Thu Dec 29 16:07:11 2022 +0000 : Merge pull request #1489 from InfrPopGen/master
464fc78 - InfrPopGen, Thu Dec 29 16:06:14 2022 +0000 : Added new lineage CK.1.1 from #1452 with 20 new sequence designations, and 0 updated
3f57522 - InfrPopGen, Tue Dec 27 21:15:47 2022 +0000 : Merge pull request #1482 from InfrPopGen/master
dea2971 - InfrPopGen, Tue Dec 27 21:14:50 2022 +0000 : Added new lineage BF.5.2 from #1476 with 25 new sequence designations, and 0 updated
604f285 - InfrPopGen, Tue Dec 27 13:59:49 2022 +0000 : Merge pull request #1477 from InfrPopGen/master
7b601b3 - InfrPopGen, Tue Dec 27 13:58:50 2022 +0000 : Added new lineage BF.5.1 from #1475 with 202 new sequence designations, and 4 updated from BF.5
ededb44 - InfrPopGen, Sun Dec 25 14:36:57 2022 +0000 : Merge pull request #1469 from InfrPopGen/master
e1f4500 - InfrPopGen, Sun Dec 25 14:36:04 2022 +0000 : Added new lineage BQ.1.13.1 from #1400 with 199 new sequence designations, and 0 updated
3cbd64a - InfrPopGen, Sun Dec 25 11:30:41 2022 +0000 : Merge pull request #1468 from InfrPopGen/master
a3836a2 - InfrPopGen, Sun Dec 25 11:29:57 2022 +0000 : Added new lineage DN.1.1 from #1463 with 0 new sequence designations, and 70 updated from DN.1
9327495 - Cornelius Roemer, Sat Dec 24 20:04:42 2022 +0100 : Added lineage XBB.3.3 (S:V1122L) with 40 designations
0b7c707 - Cornelius Roemer, Sat Dec 24 15:08:26 2022 +0100 : Added lineage BN.1.3.4 (S:V445A) with 12 designations
fadae29 - Cornelius Roemer, Sat Dec 24 14:50:04 2022 +0100 : Added lineage DP.1 (BQ.1.1.8.1 with S:A352S) with 13 designations
0fcdba9 - Cornelius Roemer, Thu Dec 22 15:05:50 2022 +0100 : Added lineage BQ.1.1.31 (S:S256L) with 250 designations
71ffabb - InfrPopGen, Fri Dec 23 14:56:03 2022 +0000 : Merge pull request #1461 from InfrPopGen/master
d861164 - InfrPopGen, Fri Dec 23 14:54:43 2022 +0000 : Added new lineage DJ.1.3 from #1409 with 25 new sequence designations, and 1 updated from DJ.1
758e55d - Cornelius Roemer, Thu Dec 22 14:58:56 2022 +0100 : Added lineage BQ.1.1.30 (S:V445A) with 40 designations
96643c3 - Cornelius Roemer, Thu Dec 22 14:57:31 2022 +0100 : Added lineage BQ.1.27 (S:V445A) with 50 designations
30e55e7 - Cornelius Roemer, Thu Dec 22 14:52:16 2022 +0100 : Added lineage BQ.1.1.29 (S:Q613H) with 90 designations
5c2a6b5 - Cornelius Roemer, Thu Dec 22 14:49:02 2022 +0100 : Broadened BQ.1.1.11 to encompass the large S:F494P branch with 250 designations
52e2d27 - Cornelius Roemer, Thu Dec 22 14:46:03 2022 +0100 : Added lineage DN.1 (BQ.1.1.5 with S:K147N) with 190 designations
c5917b5 - Cornelius Roemer, Thu Dec 22 14:07:10 2022 +0100 : Added lineage XBB.1.7 (S:V608I) with 40 designations
3f849fd - Cornelius Roemer, Thu Dec 22 14:02:53 2022 +0100 : Added extra XBB.1.6 designations
614acb3 - Cornelius Roemer, Thu Dec 22 14:00:27 2022 +0100 : Added linage XBB.2.2 (S:Q613H) with 30 designations
dd4eb82 - Cornelius Roemer, Thu Dec 22 13:59:20 2022 +0100 : Added lineage XBB.2.1 (S:N764S) with 100 designations
e25260a - Cornelius Roemer, Thu Dec 22 13:50:54 2022 +0100 : Added lineage XBB.3.2 (S:M177T) with 100 designations
23d7200 - Cornelius Roemer, Thu Dec 22 13:26:09 2022 +0100 : Added lineage BN.1.3.3 (S:E147Q) with 100 designations
712d196 - InfrPopGen, Wed Dec 21 14:09:23 2022 +0000 : Merge pull request #1454 from InfrPopGen/master
f34c6e3 - InfrPopGen, Wed Dec 21 14:08:25 2022 +0000 : Added new lineage BN.1.3.2 from #1397 with 25 new sequence designations, and 0 updated
96f252c - InfrPopGen, Wed Dec 21 13:11:31 2022 +0000 : Merge pull request #1453 from InfrPopGen/master
a3c1579 - InfrPopGen, Wed Dec 21 13:10:33 2022 +0000 : Added new lineage BQ.1.25.1 from #1451 with 87 new sequence designations, and 1 updated from BQ.1.25
9d54bac - InfrPopGen, Sun Dec 18 11:33:32 2022 +0000 : Merge pull request #1443 from InfrPopGen/master
6202eed - InfrPopGen, Sun Dec 18 11:32:25 2022 +0000 : Added new lineage BF.10.1 from #1442 with 27 new sequence designations, and 0 updated
0e1e6c7 - InfrPopGen, Fri Dec 16 14:24:10 2022 +0000 : Merge pull request #1439 from InfrPopGen/master
b0f660e - InfrPopGen, Fri Dec 16 14:22:53 2022 +0000 : Added new lineage CR.1.3 from #1355 with 21 new sequence designations, and 0 updated
e5d6304 - Cornelius Roemer, Fri Dec 16 00:45:42 2022 +0100 : Added lineage XBB.1.6 (S:L216F, S:H146K) from #1173 with 48 designations
bf55d33 - Cornelius Roemer, Thu Dec 15 01:53:52 2022 +0100 : Added lineage CH.1.1.3 (S:S255P) from #1405 with 90 new designations
503c9fd - Cornelius Roemer, Thu Dec 15 01:50:58 2022 +0100 : Added lienage CH.3.1 (S:S494P) with 14 designations from #1421
cacd036 - Cornelius Roemer, Thu Dec 15 01:44:23 2022 +0100 : Added recombinant XBK (BA.5.2/CJ.1) from #1418 with 50 designations
93a4455 - Cornelius Roemer, Thu Dec 15 01:28:19 2022 +0100 : Added lineage BE.10 (S:K444T, S:N460K) from #1411 with 360 designations
856eef2 - Cornelius Roemer, Thu Dec 15 01:11:27 2022 +0100 : Added issue #1384 to CJ.1.1
536b3c2 - Cornelius Roemer, Thu Dec 15 00:49:42 2022 +0100 : Added lineage CN.2 (BA.5.2.21 with S:R346T, S:Y28H) from #1404 with 400 designations
bee7b31 - Cornelius Roemer, Thu Dec 15 00:15:51 2022 +0100 : Added lineage CM.4.1 (S:K478R) with 30 designations
f86f901 - Cornelius Roemer, Thu Dec 15 00:07:54 2022 +0100 : Added lineage CM.5.2 (S:G485D) from #1386 with 40 designations
638fcfd - Cornelius Roemer, Wed Dec 14 23:52:05 2022 +0100 : Added lineage CJ.1.1 (S:V445A) with 10 designations
f1f2e2c - InfrPopGen, Sat Dec 10 12:00:28 2022 +0000 : Merge pull request #1424 from InfrPopGen/master
9eb3a3f - InfrPopGen, Sat Dec 10 11:57:30 2022 +0000 : Added new lineage DJ.1.2 from #1379 with 46 new sequence designations, and 0 updated
9097629 - Cornelius Roemer, Wed Dec 7 19:30:04 2022 +0100 : Added lineage DM.1 (BQ.1.1.15.1, S:A348S) with 21 designations
da692fd - Cornelius Roemer, Tue Dec 6 00:24:05 2022 +0100 : Added lineage CV.2 (BM.1.1.3 with S:486P) from #1374 with 25 designations

pango-designation - pango designations v1.17

Published by aineniamh almost 2 years ago

Notes

lineage designation date
BQ.1.22 2022-11-02
BF.7.4.2 2022-11-02
CP.1.2 2022-11-02
CP.1.3 2022-11-02
CP.2 2022-11-02
CP.3 2022-11-02
CP.4 2022-11-02
CP.5 2022-11-02
CP.6 2022-11-02
CR.1.1 2022-11-02
BS.1.2 2022-11-02
CM.5.1 2022-11-02
BL.5 2022-11-02
XAY.1.1 2022-11-03
BQ.1.1.20 2022-11-03
BQ.1.1.21 2022-11-03
BQ.1.1.22 2022-11-03
CZ.1 2022-11-03
XBB.4.1 2022-11-03
BQ.1.23 2022-11-03
BA.5.2.38 2022-11-03
DA.1 2022-11-03
BF.7.13 2022-11-03
BF.7.13.1 2022-11-03
BF.7.13.2 2022-11-03
XBF 2022-11-03
CA.3.1 2022-11-03
CM.7 2022-11-04
BA.5.2.39 2022-11-04
DB.1 2022-11-04
BF.33 2022-11-04
BA.4.6.5 2022-11-04
DC.1 2022-11-04
BQ.1.1.23 2022-11-04
BQ.1.1.24 2022-11-04
DD.1 2022-11-04
BE.6 2022-11-04
BE.7 2022-11-04
BE.8 2022-11-04
BA.5.11 2022-11-04
DB.2 2022-11-04
BQ.1.24 2022-11-04
BA.5.2.40 2022-11-04
BQ.1.25 2022-11-05
CQ.1.1 2022-11-05
CR.1.2 2022-11-05
DE.1 2022-11-05
DE.2 2022-11-05
CM.8 2022-11-05
DF.1 2022-11-06
XBB.1.4 2022-11-06
BF.34 2022-11-08
XBB.1.5 2022-11-08
DG.1 2022-11-09
DH.1 2022-11-09
BR.2.1 2022-11-09
BN.1.7 2022-11-10
CM.8.1 2022-11-10
CM.9 2022-11-10
CM.6.1 2022-11-10
BE.9 2022-11-12
BQ.1.26 2022-11-12
BF.7.5.1 2022-11-13
BA.5.2.41 2022-11-13
CK.3 2022-11-14
XBG 2022-11-14
BA.5.1.31 2022-11-15
XBH 2022-11-16
BW.1.1 2022-11-20
BN.1.8 2022-11-22
BQ.1.1.25 2022-11-22
CM.2.1 2022-11-22
DJ.1 2022-11-23
DJ.1.1 2022-11-23
BA.5.2.42 2022-11-23
XBB.1.4.1 2022-11-25
BA.5.2.43 2022-11-26
BN.1.9 2022-11-28
CH.1.1.1 2022-11-29
CH.1.1.2 2022-11-29
BA.5.2.44 2022-11-29
DK.1 2022-11-30
BQ.1.1.26 2022-12-01
XBJ 2022-12-01
CH.3 2022-12-01
BQ.1.1.27 2022-12-02
DL.1 2022-12-03
BA.5.2.45 2022-12-03
BQ.1.1.28 2022-12-04
BQ.1.26.1 2022-12-04

6f9337f - InfrPopGen, Sun Dec 4 15:27:20 2022 +0000 : Merge pull request #1401 from InfrPopGen/master
dd51c17 - InfrPopGen, Sun Dec 4 15:25:41 2022 +0000 : Added new lineage BQ.1.26.1 from #1369 with 57 new sequence designations, and 11 updated from BQ.1.26
16003d3 - Cornelius Roemer, Sun Dec 4 16:07:12 2022 +0100 : Added lineage BQ.1.1.28 (S:P251L) with 150 designations
add3b5a - InfrPopGen, Sat Dec 3 15:50:07 2022 +0000 : Merge pull request #1399 from InfrPopGen/master
3cc4153 - InfrPopGen, Sat Dec 3 15:48:18 2022 +0000 : Added new lineage BA.5.2.45 from #1383 with 19 new sequence designations, and 0 updated
e31f3a3 - InfrPopGen, Sat Dec 3 12:17:27 2022 +0000 : Merge pull request #1398 from InfrPopGen/master
4f711f1 - InfrPopGen, Sat Dec 3 12:15:41 2022 +0000 : Added new lineage DL.1 from #1376 with 147 new sequence designations, and 0 updated
72ee99d - Angie Hinrichs, Fri Dec 2 17:11:19 2022 -0800 : Merge pull request #1395 from rquiroga7/patch-1
242e7c2 - Cornelius Roemer, Fri Dec 2 20:51:50 2022 +0100 : Added lineage BQ.1.1.27 (S:G181R) with 50 designations
7a55e22 - rquiroga7, Fri Dec 2 11:48:37 2022 -0300 : Update BQ.1.1.25 mutations
f3ef169 - Cornelius Roemer, Thu Dec 1 19:03:33 2022 +0100 : Added lineage CH.3 (S:486P) from #1375 with 14 designations
d37a34d - Cornelius Roemer, Thu Dec 1 18:34:29 2022 +0100 : Added recombinant XBJ (BA.2.3.20/BA.5.2) with 23 designations from #1268
947e598 - Cornelius Roemer, Thu Dec 1 18:14:35 2022 +0100 : Added lineage BQ.1.1.26 (S:E471Q) with 20 designations
9a9e0ef - Cornelius Roemer, Wed Nov 30 23:40:09 2022 +0100 : Added 20 extra designated sequences for BQ.1.1.25
fa14664 - Cornelius Roemer, Wed Nov 30 23:38:35 2022 +0100 : Added lineage DK.1 (BQ.1.1.7.1, S:339N) with 10 designations
dcb449a - Cornelius Roemer, Tue Nov 29 17:47:30 2022 +0100 : Added lineage BA.5.2.44 (ORF1a:L2564F) with 900 designations
f01bae3 - Cornelius Roemer, Tue Nov 29 17:17:14 2022 +0100 : Added lineages CH.1.1.1 (S:N185D) and CH.1.1.2 (S:T883I) with 50/20 designations
71a5573 - InfrPopGen, Mon Nov 28 15:13:34 2022 +0000 : Merge pull request #1373 from InfrPopGen/master
35579c0 - InfrPopGen, Mon Nov 28 15:11:49 2022 +0000 : Added new lineage BN.1.9 from #1327 with 24 new sequence designations, and 0 updated
91d5b04 - InfrPopGen, Sat Nov 26 16:13:57 2022 +0000 : Merge pull request #1371 from InfrPopGen/master
5c20270 - InfrPopGen, Sat Nov 26 16:12:20 2022 +0000 : Added new lineage BA.5.2.43 from #1312 with 31 new sequence designations, and 0 updated designations
4c6a85b - InfrPopGen, Fri Nov 25 16:46:09 2022 +0000 : Merge pull request #1368 from InfrPopGen/master
2bb9531 - InfrPopGen, Fri Nov 25 16:44:46 2022 +0000 : Added new lineage XBB.1.4.1 from #1352 with 8 new sequence designations, and 3 updated designations from XBB.1.4
fb90126 - InfrPopGen, Wed Nov 23 20:28:34 2022 +0000 : Merge pull request #1365 from InfrPopGen/master
1f8b3b0 - InfrPopGen, Wed Nov 23 20:27:10 2022 +0000 : Added new lineage BA.5.2.42 from #1266 with 50 new sequence designations, and 0 updated designations
9dddb82 - InfrPopGen, Wed Nov 23 16:21:53 2022 +0000 : Merge pull request #1364 from InfrPopGen/master
d0dbb33 - InfrPopGen, Wed Nov 23 16:20:24 2022 +0000 : Added new lineage DJ.1.1 from #1245 with 0 new sequence designations, and 17 updated designations from DJ.1
2bef77b - InfrPopGen, Wed Nov 23 16:00:02 2022 +0000 : Merge pull request #1363 from InfrPopGen/master
89c833a - InfrPopGen, Wed Nov 23 15:57:39 2022 +0000 : Added new recombinant lineage DJ.1 from #1245 with 87 new sequence designations, and 61 updated designations from BA.5.1.25
11b0915 - Cornelius Roemer, Tue Nov 22 17:44:26 2022 +0100 : Linked BW.1.1 (S:V486A) to #1341 in lineage notes
c081af4 - Cornelius Roemer, Tue Nov 22 17:40:14 2022 +0100 : Added lineage CM.2.1 (S:F486S) from issue #1356 with 7 designations
188716e - Cornelius Roemer, Tue Nov 22 16:54:19 2022 +0100 : Added lineage BQ.1.1.25 (S:F490S) with 22 designations
9fd95c8 - Cornelius Roemer, Tue Nov 22 16:47:42 2022 +0100 : Added lineage BN.1.8 (S:A475V) with 11 designations
4374c80 - Cornelius Roemer, Sun Nov 20 19:27:38 2022 +0100 : Added lineage BW.1.1 (S:F486S) with 25 designations
ceef3f2 - InfrPopGen, Wed Nov 16 17:31:46 2022 +0000 : Merge pull request #1346 from InfrPopGen/master
6da3030 - InfrPopGen, Wed Nov 16 17:30:02 2022 +0000 : Added new recombinant lineage XBH from #1229 with 36 new sequence designations, and 0 updated designations
5a35d87 - InfrPopGen, Tue Nov 15 15:01:01 2022 +0000 : Merge pull request #1344 from InfrPopGen/master
1eeb05e - InfrPopGen, Tue Nov 15 14:59:39 2022 +0000 : Added new lineage BA.5.1.31 from #991 with 31 new sequence designations, and 1 updated designations from BA.5.1
04e9326 - Cornelius Roemer, Tue Nov 15 00:07:48 2022 +0100 : fix: Use monophyletic BA.5.2.41 designations from Usher tree
9a02ce3 - InfrPopGen, Mon Nov 14 17:34:50 2022 +0000 : Merge pull request #1338 from InfrPopGen/master
4941af7 - InfrPopGen, Mon Nov 14 17:32:32 2022 +0000 : Added new recombinant lineage XBG from #896 with 14 new sequence designations, and 0 updated designations
b336776 - InfrPopGen, Mon Nov 14 16:11:44 2022 +0000 : Merge pull request #1337 from InfrPopGen/master
504be11 - InfrPopGen, Mon Nov 14 16:09:56 2022 +0000 : Added new lineage CK.3 from #1121 with 76 new sequence designations, and 15 updated designations from CK.1
b3301b5 - InfrPopGen, Sun Nov 13 14:54:51 2022 +0000 : Merge pull request #1331 from InfrPopGen/master
41a7f39 - InfrPopGen, Sun Nov 13 14:53:32 2022 +0000 : Added new lineage BA.5.2.41 from #1328 with 30 new sequence designations, and 0 updated designations
005b1e7 - InfrPopGen, Sun Nov 13 13:01:16 2022 +0000 : Merge pull request #1329 from InfrPopGen/master
073a80e - InfrPopGen, Sun Nov 13 13:00:12 2022 +0000 : Added new lineage BF.7.5.1 from #1317 with 17 new sequence designations, and 5 updated designations from BF.7.5
41d3aec - InfrPopGen, Sat Nov 12 17:01:17 2022 +0000 : Merge pull request #1323 from InfrPopGen/master
97c2640 - InfrPopGen, Sat Nov 12 16:59:30 2022 +0000 : Added new lineage BQ.1.26 from #1315 with 15 new sequence designations, and 0 updated designations
78d95ee - InfrPopGen, Sat Nov 12 15:09:08 2022 +0000 : Merge pull request #1322 from InfrPopGen/master
0ae1ea8 - InfrPopGen, Sat Nov 12 15:07:30 2022 +0000 : Added new lineage BE.9 from #1302 with 233 new sequence designations, and 0 updated designations
c18407f - Cornelius Roemer, Thu Nov 10 15:11:36 2022 +0100 : Added lineage CM.6.1 (S:A348S) with 6 designations
606b44e - Cornelius Roemer, Thu Nov 10 15:09:37 2022 +0100 : Added lineage CM.9 (S:S256L) with 20 designations, added extra CM.6 designations
(piranha) [11:43:51] ~/repositories/pango-designation % git log --pretty=format:"%h - %an, %ad : %s"
42db19e - Áine O'Toole, Mon Dec 5 11:34:14 2022 +0000 : Update init.py
6f9337f - InfrPopGen, Sun Dec 4 15:27:20 2022 +0000 : Merge pull request #1401 from InfrPopGen/master
dd51c17 - InfrPopGen, Sun Dec 4 15:25:41 2022 +0000 : Added new lineage BQ.1.26.1 from #1369 with 57 new sequence designations, and 11 updated from BQ.1.26
16003d3 - Cornelius Roemer, Sun Dec 4 16:07:12 2022 +0100 : Added lineage BQ.1.1.28 (S:P251L) with 150 designations
add3b5a - InfrPopGen, Sat Dec 3 15:50:07 2022 +0000 : Merge pull request #1399 from InfrPopGen/master
3cc4153 - InfrPopGen, Sat Dec 3 15:48:18 2022 +0000 : Added new lineage BA.5.2.45 from #1383 with 19 new sequence designations, and 0 updated
e31f3a3 - InfrPopGen, Sat Dec 3 12:17:27 2022 +0000 : Merge pull request #1398 from InfrPopGen/master
4f711f1 - InfrPopGen, Sat Dec 3 12:15:41 2022 +0000 : Added new lineage DL.1 from #1376 with 147 new sequence designations, and 0 updated
72ee99d - Angie Hinrichs, Fri Dec 2 17:11:19 2022 -0800 : Merge pull request #1395 from rquiroga7/patch-1
242e7c2 - Cornelius Roemer, Fri Dec 2 20:51:50 2022 +0100 : Added lineage BQ.1.1.27 (S:G181R) with 50 designations
7a55e22 - rquiroga7, Fri Dec 2 11:48:37 2022 -0300 : Update BQ.1.1.25 mutations
f3ef169 - Cornelius Roemer, Thu Dec 1 19:03:33 2022 +0100 : Added lineage CH.3 (S:486P) from #1375 with 14 designations
d37a34d - Cornelius Roemer, Thu Dec 1 18:34:29 2022 +0100 : Added recombinant XBJ (BA.2.3.20/BA.5.2) with 23 designations from #1268
947e598 - Cornelius Roemer, Thu Dec 1 18:14:35 2022 +0100 : Added lineage BQ.1.1.26 (S:E471Q) with 20 designations
9a9e0ef - Cornelius Roemer, Wed Nov 30 23:40:09 2022 +0100 : Added 20 extra designated sequences for BQ.1.1.25
fa14664 - Cornelius Roemer, Wed Nov 30 23:38:35 2022 +0100 : Added lineage DK.1 (BQ.1.1.7.1, S:339N) with 10 designations
dcb449a - Cornelius Roemer, Tue Nov 29 17:47:30 2022 +0100 : Added lineage BA.5.2.44 (ORF1a:L2564F) with 900 designations
f01bae3 - Cornelius Roemer, Tue Nov 29 17:17:14 2022 +0100 : Added lineages CH.1.1.1 (S:N185D) and CH.1.1.2 (S:T883I) with 50/20 designations
71a5573 - InfrPopGen, Mon Nov 28 15:13:34 2022 +0000 : Merge pull request #1373 from InfrPopGen/master
35579c0 - InfrPopGen, Mon Nov 28 15:11:49 2022 +0000 : Added new lineage BN.1.9 from #1327 with 24 new sequence designations, and 0 updated
91d5b04 - InfrPopGen, Sat Nov 26 16:13:57 2022 +0000 : Merge pull request #1371 from InfrPopGen/master
5c20270 - InfrPopGen, Sat Nov 26 16:12:20 2022 +0000 : Added new lineage BA.5.2.43 from #1312 with 31 new sequence designations, and 0 updated designations
4c6a85b - InfrPopGen, Fri Nov 25 16:46:09 2022 +0000 : Merge pull request #1368 from InfrPopGen/master
2bb9531 - InfrPopGen, Fri Nov 25 16:44:46 2022 +0000 : Added new lineage XBB.1.4.1 from #1352 with 8 new sequence designations, and 3 updated designations from XBB.1.4
fb90126 - InfrPopGen, Wed Nov 23 20:28:34 2022 +0000 : Merge pull request #1365 from InfrPopGen/master
1f8b3b0 - InfrPopGen, Wed Nov 23 20:27:10 2022 +0000 : Added new lineage BA.5.2.42 from #1266 with 50 new sequence designations, and 0 updated designations
9dddb82 - InfrPopGen, Wed Nov 23 16:21:53 2022 +0000 : Merge pull request #1364 from InfrPopGen/master
d0dbb33 - InfrPopGen, Wed Nov 23 16:20:24 2022 +0000 : Added new lineage DJ.1.1 from #1245 with 0 new sequence designations, and 17 updated designations from DJ.1
2bef77b - InfrPopGen, Wed Nov 23 16:00:02 2022 +0000 : Merge pull request #1363 from InfrPopGen/master
89c833a - InfrPopGen, Wed Nov 23 15:57:39 2022 +0000 : Added new recombinant lineage DJ.1 from #1245 with 87 new sequence designations, and 61 updated designations from BA.5.1.25
11b0915 - Cornelius Roemer, Tue Nov 22 17:44:26 2022 +0100 : Linked BW.1.1 (S:V486A) to #1341 in lineage notes
c081af4 - Cornelius Roemer, Tue Nov 22 17:40:14 2022 +0100 : Added lineage CM.2.1 (S:F486S) from issue #1356 with 7 designations
188716e - Cornelius Roemer, Tue Nov 22 16:54:19 2022 +0100 : Added lineage BQ.1.1.25 (S:F490S) with 22 designations
9fd95c8 - Cornelius Roemer, Tue Nov 22 16:47:42 2022 +0100 : Added lineage BN.1.8 (S:A475V) with 11 designations
4374c80 - Cornelius Roemer, Sun Nov 20 19:27:38 2022 +0100 : Added lineage BW.1.1 (S:F486S) with 25 designations
ceef3f2 - InfrPopGen, Wed Nov 16 17:31:46 2022 +0000 : Merge pull request #1346 from InfrPopGen/master
6da3030 - InfrPopGen, Wed Nov 16 17:30:02 2022 +0000 : Added new recombinant lineage XBH from #1229 with 36 new sequence designations, and 0 updated designations
5a35d87 - InfrPopGen, Tue Nov 15 15:01:01 2022 +0000 : Merge pull request #1344 from InfrPopGen/master
1eeb05e - InfrPopGen, Tue Nov 15 14:59:39 2022 +0000 : Added new lineage BA.5.1.31 from #991 with 31 new sequence designations, and 1 updated designations from BA.5.1
04e9326 - Cornelius Roemer, Tue Nov 15 00:07:48 2022 +0100 : fix: Use monophyletic BA.5.2.41 designations from Usher tree
9a02ce3 - InfrPopGen, Mon Nov 14 17:34:50 2022 +0000 : Merge pull request #1338 from InfrPopGen/master
4941af7 - InfrPopGen, Mon Nov 14 17:32:32 2022 +0000 : Added new recombinant lineage XBG from #896 with 14 new sequence designations, and 0 updated designations
b336776 - InfrPopGen, Mon Nov 14 16:11:44 2022 +0000 : Merge pull request #1337 from InfrPopGen/master
504be11 - InfrPopGen, Mon Nov 14 16:09:56 2022 +0000 : Added new lineage CK.3 from #1121 with 76 new sequence designations, and 15 updated designations from CK.1
b3301b5 - InfrPopGen, Sun Nov 13 14:54:51 2022 +0000 : Merge pull request #1331 from InfrPopGen/master
41a7f39 - InfrPopGen, Sun Nov 13 14:53:32 2022 +0000 : Added new lineage BA.5.2.41 from #1328 with 30 new sequence designations, and 0 updated designations
005b1e7 - InfrPopGen, Sun Nov 13 13:01:16 2022 +0000 : Merge pull request #1329 from InfrPopGen/master
073a80e - InfrPopGen, Sun Nov 13 13:00:12 2022 +0000 : Added new lineage BF.7.5.1 from #1317 with 17 new sequence designations, and 5 updated designations from BF.7.5
41d3aec - InfrPopGen, Sat Nov 12 17:01:17 2022 +0000 : Merge pull request #1323 from InfrPopGen/master
97c2640 - InfrPopGen, Sat Nov 12 16:59:30 2022 +0000 : Added new lineage BQ.1.26 from #1315 with 15 new sequence designations, and 0 updated designations
78d95ee - InfrPopGen, Sat Nov 12 15:09:08 2022 +0000 : Merge pull request #1322 from InfrPopGen/master
0ae1ea8 - InfrPopGen, Sat Nov 12 15:07:30 2022 +0000 : Added new lineage BE.9 from #1302 with 233 new sequence designations, and 0 updated designations
c18407f - Cornelius Roemer, Thu Nov 10 15:11:36 2022 +0100 : Added lineage CM.6.1 (S:A348S) with 6 designations
606b44e - Cornelius Roemer, Thu Nov 10 15:09:37 2022 +0100 : Added lineage CM.9 (S:S256L) with 20 designations, added extra CM.6 designations
a227cca - Cornelius Roemer, Thu Nov 10 15:04:42 2022 +0100 : Added extra CM.7 designations
afb053d - Cornelius Roemer, Thu Nov 10 15:02:02 2022 +0100 : Added lineage CM.8.1 (S:F486S) with 2 designations
459650f - Cornelius Roemer, Thu Nov 10 14:59:09 2022 +0100 : Added lineage BN.1.7 (S:M177T, S:H1101Y) with 30 designations
2bd65df - InfrPopGen, Wed Nov 9 16:52:53 2022 +0000 : Merge pull request #1309 from InfrPopGen/master
4210cef - InfrPopGen, Wed Nov 9 16:51:22 2022 +0000 : Added new lineage BR.2.1 from #1292 with 33 new sequence designations, and 0 updated designations
3ce104b - InfrPopGen, Wed Nov 9 15:07:02 2022 +0000 : Merge pull request #1308 from InfrPopGen/master
2629592 - InfrPopGen, Wed Nov 9 15:05:12 2022 +0000 : Added new lineage DH.1 from #1242 with 18 new sequence designations, and 12 updated designations from BA.5.1.22
d2f6780 - Cornelius Roemer, Wed Nov 9 01:13:30 2022 +0100 : Added lineage DG.1 (CK.2.1.1 with S:G252S) from #1288 with 15 designations
c660a32 - Cornelius Roemer, Tue Nov 8 20:59:28 2022 +0100 : Added lineage XBB.1.5 (S:F486P) with 3 designations
0391615 - InfrPopGen, Tue Nov 8 16:56:22 2022 +0000 : Merge pull request #1303 from InfrPopGen/master
8c4e467 - InfrPopGen, Tue Nov 8 16:54:28 2022 +0000 : Added new lineage BF.34 from #1233 with 47 new sequence designations, and 0 updated designations
53e2b11 - Angie Hinrichs, Mon Nov 7 10:14:19 2022 -0800 : Merge pull request #1299 from ciscorucinski/master
33f9aeb - ciscorucinski, Tue Nov 8 02:13:35 2022 +0900 : fixed DF.1 sorted location
f7e3c2a - Cornelius Roemer, Mon Nov 7 06:25:11 2022 +0100 : Added new XBB.4 and XBB.4.1 designations
89b1910 - Cornelius Roemer, Mon Nov 7 01:48:14 2022 +0100 : fix: Alias error for DE.2 in lineage_notes.txt
fa7e5ee - Cornelius Roemer, Sun Nov 6 17:58:59 2022 +0100 : Added lineage XBB.1.4 (S:T883I) with 15 designations
d5404f6 - InfrPopGen, Sun Nov 6 11:19:34 2022 +0000 : Merge pull request #1293 from InfrPopGen/master
0a7a88d - InfrPopGen, Sun Nov 6 11:18:41 2022 +0000 : Added new lineage DF.1 from #1270 with 11 new sequence designations, and 2 updated designations from BA.5.10.1
4243680 - Cornelius Roemer, Sat Nov 5 16:35:15 2022 +0100 : Added lineage CM.8 (S:G446S) with 7 designations
af03c03 - Cornelius Roemer, Sat Nov 5 16:31:59 2022 +0100 : Added lineage DE.2 (S:R346T, S:G181V) with 40 designations
b05badf - Cornelius Roemer, Sat Nov 5 16:18:01 2022 +0100 : Added lineage DE.1 (BA.5.1.23 with S:A694V) with 500 designations
b1bddf9 - Cornelius Roemer, Sat Nov 5 16:12:25 2022 +0100 : Added lineage CR.1.2 (S:V445A) with 8 designations
be41a81 - Cornelius Roemer, Sat Nov 5 16:10:15 2022 +0100 : Added lineage CQ.1.1 (S:A262S) with 18 designations
eff6eea - Cornelius Roemer, Sat Nov 5 16:04:04 2022 +0100 : Added lineage BQ.1.25 (S:R346T, T8038C, T25569C, G26031A) with 30 designations
4116839 - Angie Hinrichs, Fri Nov 4 09:22:07 2022 -0700 : Merge pull request #1290 from AngieHinrichs/master
4b5957e - Angie Hinrichs, Fri Nov 4 09:20:37 2022 -0700 : Fixing typo reported by @Sam8138 in #1289
045a9a3 - Cornelius Roemer, Fri Nov 4 04:42:05 2022 +0100 : Fix: typos in lineage_notes.txt, thanks @Sam8138
ea5ed18 - Cornelius Roemer, Fri Nov 4 04:38:56 2022 +0100 : Added lineage BA.5.2.40 (S:N450D) with 10 designations
2e36f41 - Cornelius Roemer, Fri Nov 4 04:32:41 2022 +0100 : Added lineage BQ.1.24 (S:T240I, S:R346T) with 10 designations
210e64b - Cornelius Roemer, Fri Nov 4 04:24:18 2022 +0100 : Added lineage DB.2 (S:A262S) with 30 designations
a279265 - Cornelius Roemer, Fri Nov 4 04:21:31 2022 +0100 : Added lineage BA.5.11 (S:R346T) with 200 designations from #1277
67a418c - Cornelius Roemer, Fri Nov 4 04:16:16 2022 +0100 : Added lineage BE.8 (S:R346T) with 90 designations from #1278
9ede4a2 - Cornelius Roemer, Fri Nov 4 04:13:49 2022 +0100 : Added lineage BE.7 (S:R346T) with 90 designations from #1280
09994b7 - Cornelius Roemer, Fri Nov 4 04:10:06 2022 +0100 : Added lineage BE.6 (S:R346S) with 30 designations
f66996c - Cornelius Roemer, Fri Nov 4 04:04:13 2022 +0100 : Added lineage BE.5 (S:R346T) with 100 designations from issue #1281
f647c11 - Cornelius Roemer, Fri Nov 4 04:01:14 2022 +0100 : fix: Add DD to alias_key.json
b9835e7 - Cornelius Roemer, Fri Nov 4 03:59:54 2022 +0100 : Added lineage DD.1 (BA.2.3.21 with 10 extra S muts) from #1287 with 10 designations
1468352 - Cornelius Roemer, Fri Nov 4 03:50:52 2022 +0100 : Include more BQ.1.1.24 samples
c1c1c18 - Cornelius Roemer, Fri Nov 4 03:41:38 2022 +0100 : Added lineage BQ.1.1.24 (ORF7a:Q76H, S:Y144-) with 10 designations
52f87df - Cornelius Roemer, Fri Nov 4 03:34:30 2022 +0100 : Added lineage BQ.1.1.23 (ORF3a:V97I, S:Y144-) with 60 designations
6c3a6ee - Cornelius Roemer, Fri Nov 4 03:27:16 2022 +0100 : Added lineage BA.4.6.5 (ORF9b:N36S) and sublineage DC.1 (S:N460S)
214ecea - Cornelius Roemer, Fri Nov 4 00:41:15 2022 +0100 : Added lineage BF.33 (S:R346I, S:N460K) with 15 designations
42f41d6 - Cornelius Roemer, Fri Nov 4 00:33:50 2022 +0100 : Added lineage DB.1 (BA.5.2.25 with S:R346T, S:N460K) with 5 designations
c67ba8f - Cornelius Roemer, Fri Nov 4 00:30:38 2022 +0100 : Added lineage BA.5.2.39 (S:R346T) with 50 designations
0f1252f - Cornelius Roemer, Fri Nov 4 00:17:48 2022 +0100 : Added lineage CM.7 (S:F486S) with 5 designations
5cd3e5c - Cornelius Roemer, Thu Nov 3 23:59:56 2022 +0100 : Added lineage CA.3.1 (BA.2.75.2 with S:K444M, S:L452R) with 4 designations
366f80e - Cornelius Roemer, Thu Nov 3 22:53:57 2022 +0100 : Added recombinant XBF [BA.5.2.3,CJ.1] with 11 designations
6410648 - Cornelius Roemer, Thu Nov 3 22:42:04 2022 +0100 : Added lineage BF.7.13 and BF.7.13.1-2
bf415fe - Cornelius Roemer, Thu Nov 3 22:35:17 2022 +0100 : Added lineages BA.5.2.38 (S:T430I) and sublineage DA.1 (S:R346T) with 200 designations
18b2798 - Cornelius Roemer, Thu Nov 3 22:18:50 2022 +0100 : Added lineage BQ.1.23 (A2653G, S:Y144-) with 85 designations
effb362 - Cornelius Roemer, Thu Nov 3 02:24:24 2022 +0100 : Added lineage XBB.4.1 (S:T470N) with 2 designations
cff5092 - Cornelius Roemer, Thu Nov 3 02:04:27 2022 +0100 : Added lineage CZ.1 (BQ.1.1.1 with S:F490I) with 3 designations
1fe86e6 - Cornelius Roemer, Thu Nov 3 01:57:56 2022 +0100 : Added lineage BQ.1.1.22 (S:144- and C913A) with 25 designations
9e7cf1f - Cornelius Roemer, Thu Nov 3 01:55:43 2022 +0100 : Added lineage BQ.1.1.21 (S:144- and A17946G) with 25 designations
3819669 - Cornelius Roemer, Thu Nov 3 01:53:28 2022 +0100 : Added lineage BQ.1.1.20 (S:144- and ORF3a:H204Y) with 15 designations
0e71e05 - Cornelius Roemer, Thu Nov 3 00:43:53 2022 +0100 : Added lineage XAY.1.1 (S:R346T, ORF1a:K2108N) with 3 designations from issue #1255
39881fe - Cornelius Roemer, Thu Nov 3 00:39:17 2022 +0100 : Added 8 XAY.2 designations
1107706 - Cornelius Roemer, Thu Nov 3 00:37:30 2022 +0100 : Clean up XAY designations
6854882 - Angie Hinrichs, Wed Nov 2 15:07:22 2022 -0700 : Merge pull request #1285 from AngieHinrichs/master
9b5d7c2 - Angie Hinrichs, Wed Nov 2 15:04:42 2022 -0700 : Removed git version conflict text reported by @PeterSlickers in #1284, and some other typos/formatting issues.
5eddcdc - Angie Hinrichs, Wed Nov 2 14:56:22 2022 -0700 : Fixing copy-paste error reported by @Sam8138 in #1229
d057f40 - Angie Hinrichs, Wed Nov 2 08:26:41 2022 -0700 : Merge pull request #1283 from ciscorucinski/master
ac8b0b0 - InfrPopGen, Wed Nov 2 14:18:34 2022 +0000 : Merge pull request #1282 from InfrPopGen/master
0619432 - InfrPopGen, Wed Nov 2 14:17:05 2022 +0000 : Added new lineage BL.5 from #1105 with 8 new sequence designations, and 0 updated designations
b832ded - ciscorucinski, Wed Nov 2 22:26:03 2022 +0900 : fixed CM.6 unaliased designation
8374248 - Cornelius Roemer, Wed Nov 2 01:07:56 2022 +0100 : Added lineage CM.5.1 (S:Q675R) with 8 designations
6533717 - Cornelius Roemer, Wed Nov 2 01:04:26 2022 +0100 : Added lineage BS.1.2 (S:T430I) with 5 designations
a45988e - Cornelius Roemer, Wed Nov 2 00:47:50 2022 +0100 : Added lineage CR.1.1 (S:V62I) with 20 designations
d5bb400 - Cornelius Roemer, Wed Nov 2 00:41:47 2022 +0100 : Added lineage CP.6 (S:V1264L) with 20 designations
59a2132 - Cornelius Roemer, Wed Nov 2 00:38:59 2022 +0100 : Added lineage CP.5 (S:C1247F) with 40 designations
4c34480 - Cornelius Roemer, Wed Nov 2 00:37:20 2022 +0100 : Added lineage CP.4 (S:I770V) with 20 designations
36a5ffa - Cornelius Roemer, Wed Nov 2 00:33:49 2022 +0100 : Added lineage CP.3 (S:N460Y) with 10 designations
6dba782 - Cornelius Roemer, Wed Nov 2 00:32:38 2022 +0100 : Added lineage CP.2 (S:N334K) with 10 designations
8f017ad - Cornelius Roemer, Wed Nov 2 00:29:21 2022 +0100 : Added lineage CP.1.3 (S:G446S) with 30 designations
79573ba - Cornelius Roemer, Wed Nov 2 00:27:58 2022 +0100 : Added CP.1.2 (S:K150N) with 30 designations
6fe0ed8 - Cornelius Roemer, Wed Nov 2 00:25:00 2022 +0100 : Added lineage BF.7.4.2
fe26a99 - Cornelius Roemer, Wed Nov 2 00:21:40 2022 +0100 : Merge branch 'master' into HEAD
64b1a1a - Cornelius Roemer, Wed Nov 2 00:21:01 2022 +0100 : Added lineage BQ.1.22 (S:R346T after C26681T) with 13 designations
16d0c53 - Cornelius Roemer, Wed Nov 2 00:13:40 2022 +0100 : Added lineage BQ.1.22 (S:R346T after C26681T) with 13 designations

pango-designation - pango designations v1.16

Published by aineniamh almost 2 years ago

What's changed:

pango-designation - v1.15.1

Published by corneliusroemer about 2 years ago

Bump __init__.py version string correctly

pango-designation - v1.15

Published by corneliusroemer about 2 years ago

New lineages with designation date

lineage designation date
BA.5.10 2022-08-18
BA.5.1.11 2022-08-18
XAR 2022-08-18
BA.2.75.2 2022-08-19
BA.2.76.2 2022-08-19
BA.5.2.6 2022-08-21
BA.2.75.3 2022-08-21
BA.5.2.7 2022-08-21
BF.15 2022-08-21
BA.4.8 2022-08-21
BA.2.75.4 2022-08-21
BL.1 2022-08-21
BA.5.1.12 2022-08-22
XAS 2022-08-22
BA.5.1.13 2022-08-22
BA.2.75.5 2022-08-22
XAT 2022-08-22
BA.5.1.14 2022-08-22
XAU 2022-08-23
XAV 2022-08-23
BF.16 2022-08-23
BE.1.1.1 2022-08-24
XAW 2022-08-25
XAY 2022-08-25
BE.1.3 2022-08-26
BA.5.2.8 2022-08-26
BA.5.1.15 2022-08-26
BA.5.1.16 2022-08-26
BA.5.1.17 2022-08-26
BA.5.2.9 2022-08-26
BA.5.2.10 2022-08-26
BA.5.2.11 2022-08-26
BA.5.2.12 2022-08-26
BF.17 2022-08-26
BF.18 2022-08-26
BF.19 2022-08-26
BF.20 2022-08-26
BF.21 2022-08-26
XAZ 2022-08-27
BA.4.1.9 2022-08-27
BA.5.1.18 2022-08-28
BA.5.5.2 2022-08-29
BM.1 2022-08-30
BF.22 2022-08-31
BA.2.3.20 2022-09-02
BN.1 2022-09-02
BP.1 2022-09-02
BA.5.5.3 2022-09-02
BQ.1 2022-09-02
BN.2 2022-09-03
BN.2.1 2022-09-03
BR.1 2022-09-03
BM.2 2022-09-03
BM.3 2022-09-03
BM.1.1 2022-09-03
BL.2 2022-09-03
BL.3 2022-09-03
BA.2.75.6 2022-09-03
BA.2.75.7 2022-09-03
BL.4 2022-09-03
BA.5.1.19 2022-09-04
BA.4.6.1 2022-09-05
BA.5.2.14 2022-09-06
BA.5.2.13 2022-09-06
BM.4 2022-09-07
BM.4.1 2022-09-07
BA.5.1.20 2022-09-07
BQ.1.1 2022-09-09
BS.1 2022-09-12
BA.5.2.15 2022-09-12
BA.5.1.21 2022-09-14
BA.5.2.16 2022-09-14
BT.1 2022-09-14
XBA 2022-09-14
BA.5.2.17 2022-09-15
BF.23 2022-09-15
BU.1 2022-09-16
BA.5.2.18 2022-09-17
BL.1.1 2022-09-17
BL.1.2 2022-09-17
XBB 2022-09-17
BR.2 2022-09-17
BM.1.1.1 2022-09-18
BA.4.1.10 2022-09-18
BA.5.10.1 2022-09-18
BA.2.83 2022-09-18
BA.5.2.19 2022-09-18
BA.5.2.20 2022-09-18
BA.5.2.21 2022-09-18
BV.1 2022-09-18
BW.1 2022-09-18
BM.5 2022-09-18
BY.1 2022-09-19
BM.4.1.1 2022-09-19
BF.24 2022-09-19
BA.2.84 2022-09-19
BA.2.31.1 2022-09-19
BA.5.2.22 2022-09-20
BA.2.75.8 2022-09-20
BA.5.2.23 2022-09-20
BE.1.2.1 2022-09-21
BZ.1 2022-09-21
BR.3 2022-09-21
CA.1 2022-09-21
BA.5.2.24 2022-09-22
BF.25 2022-09-22
BV.2 2022-09-23
BQ.1.2 2022-09-23
BQ.1.3 2022-09-23
XBC 2022-09-24
BA.5.2.25 2022-09-25
BA.5.2.26 2022-09-29
BA.5.2.27 2022-09-29
BA.5.2.28 2022-09-29
BA.5.1.22 2022-09-29
BA.5.1.23 2022-09-29
BA.5.1.24 2022-09-29
BA.5.1.25 2022-09-29
BF.26 2022-09-29
BF.27 2022-09-29
BF.28 2022-09-29
CA.2 2022-09-30
BA.2.75.9 2022-09-30
CB.1 2022-09-30
BL.1.3 2022-09-30
BS.1.1 2022-09-30
BA.2.85 2022-09-30
BA.5.2.29 2022-09-30
BE.4 2022-09-30
BE.4.1 2022-09-30
BE.4.1.1 2022-09-30
BE.1.1.2 2022-09-30
CC.1 2022-09-30
BA.5.2.30 2022-09-30
BA.5.2.31 2022-09-30
CD.1 2022-09-30
CD.2 2022-09-30
BA.5.2.32 2022-09-30
BA.5.2.33 2022-09-30
CE.1 2022-09-30
BA.5.1.26 2022-09-30
BA.5.1.27 2022-09-30
BA.5.1.28 2022-09-30
CF.1 2022-09-30
CG.1 2022-10-03
XBB.1 2022-10-03
BQ.1.4 2022-10-03
XBC.1 2022-10-03

What's Changed

Full Changelog: https://github.com/cov-lineages/pango-designation/compare/v1.14...v.1.15

pango-designation - pango-designation v1.14

Published by chrisruis about 2 years ago

  • Added lineage BA.2.75.1 from #856 with 42 new sequence designations, and 2 updated designations from BA.2.75
  • Added new lineage BA.2.10.4 from #898 with 7 new sequence designations
  • Added new lineage BJ.1 from #915 with 6 new sequence designations
  • Added new lineage BA.2.38.3 from #840 with 27 new sequence designations, and 0 updated designations
  • Added new lineage BA.2.75.2 from #963 with 10 new designations
  • Added new lineage BA.2.76.1 from #899 with 18 new sequence designations
  • Added new lineage BA.2.76.2 from #939 with 26 new designations
  • Added new lineage BA.2.9.6 from #671 with 410 new sequence designations, and 1 updated designation from BA.2
  • Added new lineage BA.5.1.10 from #901 with 910 new sequence designations, and 203 updated designations from BA.5.1
  • Added new lineage BA.5.1.11 from #908 with 327 new designations and 47 updated from BA.5.1
  • Added new lineage BA.5.1.9 from #786 with 161 new sequence designations, and 52 updated designations from BA.5.1
  • Added new lineage BA.5.10 from #936 with 37 new sequence designations, and 3 updated designations from BA.5
  • Added new lineage BA.5.5.1 from #873 with 93 new sequence designations, and 0 updated designations
  • Added new lineage BA.5.6.2 from #903 with 45 new sequence designations, and 24 updated designations from BA.5.6
  • Added new lineage BF.13 from #883 with 29 new sequence designations, and 7 updated designations from BA.5.2.1
  • Added new lineage BE.1.2 from #923 with 41 new sequence designations
  • Added new lineage BF.14 from #843 with 36 new designations and 24 updated from BA.5.2.1
  • Added new lineage BG.6 from #836 with 36 new sequence designations and 5 updated from BA.2.12.1
  • Added new lineage BH.1 from #913 with 14 new sequence designations, and 1 updated designation from BA.2.38.3
  • Added new lineage BK.1 from #901 with 0 new sequence designations, and 93 updated designations from BA.5.1.10
  • Added new recombinant lineage XAQ from #798 with 74 new sequence designations, and 0 updated designations
  • Added new recombinant lineage XAR from #860 with 49 new sequence designations, and 0 updated designations
  • Duplicates resolved mostly by agreement between big tree placement and pangolin (usher mode) assignment, & manually where those disagree. Removed some sequences because they looked like mixtures or had too many reversions or run-of-bases substitutions.
  • Removed 3194 sequences from an odd branch in BA.1 (reversions and/or BA.2 mutations) with multiple mini-BA.1 sub-branches implying errors in sequences and/or tree-building.
  • Withdrew BA.2.36.1 from #874 and re-designated as BA.2.82
pango-designation - pango-designation v1.13

Published by chrisruis about 2 years ago

  • Added new lineage BA.2.13.1 from #785 with 415 new sequence designations, and 25 updated designations from BA.2, and 2 updated from BA.2.13
  • Added new lineage BA.2.3.19 from #824 with 23 new sequence designations, and 0 updated
  • Added new lineage BA.2.36.1 from #874 with 68 new sequence designations, and 1 updated designations from BA.2
  • Added new lineage BA.2.38.2 from #828 with 55 new sequence designations, and 2 updated designations from BA.2.38
  • Added new lineage BA.2.81 with 303 new sequence designations and 6 updated from BA.2
  • Added new lineage BA.2.9.5 with 483 new sequence designations and 44 updated from BA.2.9
  • Added new lineage BA.4.1.5 with 172 new sequence designations and 39 updated from BA.4.1
  • Added new lineage BA.4.1.6 with 474 new sequence designations and 56 updated from BA.4.1
  • Added new lineage BA.4.1.7 with 42 new sequence designations and 5 updated from BA.4.1
  • Added new lineage BA.4.1.8 from #800 with 71 new sequence designations, and 5 updated designations from BA.4.1
  • Added new lineage BA.4.7 from #777 with 33 new sequence designations, and 11 updated designations from BA.4
  • Added new lineage BA.5.1.5 from #835 with 173 new sequence designations, and 7 updated designations from BA.5.1
  • Added new lineage BA.5.1.6 with 266 new sequence designations and 9 updated from BA.5.1
  • Added new lineage BA.5.1.7 with 120 new sequence designations and 1 updated from BA.5.1
  • Added new lineage BA.5.1.8 with 71 new sequence designations and 3 updated from BA.5.1
  • Added new lineage BA.5.2.5 with 51 new sequence designations
  • Added new lineage BA.5.6.1 with 44 new sequence designations
  • Added new lineage BA.5.7 with 62 new sequence designations and 8 updated from BA.5
  • Added new lineage BA.5.8 from #743 with 1048 new sequence designations, and 229 updated designations from BA.5
  • Added new lineage BA.5.9 from #753 with 156 new sequence designations, and 61 updated designations from BA.5
  • Added new lineage BF.10 with 1307 new sequence designations and 44 updated from BA.5.2.1
  • Added new lineage BF.11 from #837 with 45 new sequence designations, and 0 updated designations
  • Added new lineage BF.12 from #752 with 59 new sequence designations, and 4 updated designations from BA.5.2.1
  • Added new lineage BF.3.1 from #825 with 35 new sequence designations, and 5 updated designations from BF.3
  • Added new lineage BF.6 from #821 with 55 new sequence designations, and 5 updated designations from BA.5.2.1
  • Added new lineage BF.7 from #827 with 59 new sequence designations, and 15 updated designations from BA.5.2.1
  • Added new lineage BF.8 with 661 new sequence designations and 45 updated from BA.5.2.1
  • Added new lineage BF.9 with 84 new sequence designations
  • Added new lineage BG.5 from #763 with 1203 new sequence designations, and 41 updated designations from BA.2.12.1
  • Added new recombinant lineage XAJ from #826 with 35 new sequence designations, and 0 updated designations
  • Added new recombinant lineage XAK from #823 with 55 new sequence designations, and 0 updated designations
  • Added new recombinant lineage XAL from #757 with 95 new sequence designations, and 0 updated designations
  • Added new recombinant lineage XAM from #759 with 341 new sequence designations, and 3 updated designations
  • Added new recombinant lineage XAN from #771 with 35 new sequence designations, and 4 updated designations
  • Added new recombinant lineage XAP from #789 with 69 new sequence designations, and 0 updated designations
  • Added 100 new BA.2.75 sequence designations
  • Added 100 new BF.6 sequence designations
  • Added 1000 new BA.2.13 sequence designations
  • Added 1000 new BA.2.18 sequence designations
  • Added 1000 new BA.4.6 sequence designations
  • Added 1000 new BA.5.1.1 sequence designations
  • Added 1000 new BA.5.3.1 sequence designations
  • Added 1000 new BF.1 sequence designations
  • Added 10000 new BA.5.1 sequence designations
  • Added 10000 new BA.5.2 sequence designations
  • Added 10000 new BA.5.2.1 sequence designations
  • Added 150 new BF.3 sequence designations
  • Added 200 new BA.2.43 sequence designations
  • Added 200 new BA.2.74 sequence designations
  • Added 200 new BA.4.1.4 sequence designations
  • Added 200 new BA.4.5 sequence designations
  • Added 2000 new BA.2.36 sequence designations
  • Added 2000 new BA.5.6 sequence designations
  • Added 2000 new BE.1 sequence designations
  • Added 2000 new BE.1.1 sequence designations
  • Added 20000 new BA.2.12.1 sequence designations
  • Added 300 new BA.5.2.2 sequence designations
  • Added 300 new BA.5.3.2 sequence designations
  • Added 300 new BF.4 sequence designations
  • Added 300 new BG.2 sequence designations
  • Added 50 new BA.2.3.7 sequence designations
  • Added 500 new BA.2.21 sequence designations
  • Added 500 new BA.2.76 sequence designations
  • Added 500 new BA.5.1.2 sequence designations
  • Added 500 new BA.5.1.3 sequence designations
  • Added 500 new BA.5.2.3 sequence designations
  • Added 5000 new BA.4.1 sequence designations
  • Deprecating utils/aliasing.py in favor of pango_aliasor package
pango-designation - pango-designation v1.12

Published by chrisruis over 2 years ago

  • Added new lineage BA.2.38.1 from #809 with 33 new sequence designations and 6 updated from BA.2.38
  • Added new lineage BA.2.74 from #775 with 28 new sequence designations
  • Added new lineage BA.2.75 from #773 with 4 new sequence designations
  • Added new lineage BA.2.76 from #787 with 170 new sequence designations, and 10 updated designations from BA.2
  • Added new lineage BA.2.77 from #732 with 13 new sequence designations
  • Added new lineage BA.2.78 from #814 with 104 new sequence designations and 12 updated from BA.2
  • Added new lineage BA.2.79 from #812 with 113 new sequence designations and 1 updated from BA.2
  • Added new lineage BA.2.79.1 from #814 with 14 sequence designations updated from BA.2.79
  • Added new lineage BA.2.80 from #733 with 19 new sequence designations, and 1 updated designations from BA.2
  • Added new lineage BA.4.1.3 with 31 new sequence designations and 3 updated from BA.4.1
  • Added new lineage BA.4.1.4 with 51 new sequence designations and 3 updated from BA.4.1
  • Added new lineage BA.4.2 with 230 new sequence designations and 47 updated from BA.4
  • Added new lineage BA.4.3 with 44 new sequence designations and 9 updated from BA.4
  • Added new lineage BA.4.4 with 473 new sequence designations and 79 updated from BA.4
  • Added new lineage BA.4.5 with 29 new sequence designations and 5 updated from BA.4
  • Added new lineage BA.4.6 from #741 with 113 new sequence designations, and 163 updated designations from BA.4
  • Added new lineage BA.5.1.1 with 192 new sequence designations
  • Added new lineage BA.5.1.2 from #790 with 89 new sequence designations, and 0 updated designations
  • Added new lineage BA.5.1.3 from #765 with 243 new sequence designations, and 0 updated designations
  • Added new lineage BA.5.1.4 from #801 with 92 new sequence designations, and 24 updated designations from BA.5.1
  • Added new lineage BA.5.2.2 with 82 new sequence designations and 9 updated from BA.5.2
  • Added new lineage BA.5.2.3 with 94 new sequence designations and 1 updated from BA.5.2
  • Added new lineage BA.5.2.4 with 9 new designations and 11 updated from BA.5.2
  • Added new lineage BA.5.3.3 with 147 new sequence designations
  • Added new lineage BA.5.3.4 with 143 new sequence designations and 9 updated from BA.5.3
  • Added new lineage BA.5.6 with 393 new sequence designations and 37 updated from BA.5
  • Added new lineage BE.1.1 with 956 new sequence designations
  • Added new lineage BE.2 with 37 new sequence designations and 12 updated from BA.5.3.1
  • Added new lineage BE.3 with 220 new designations and 207 updated from BA.5.3.1
  • Added new lineage BF.1.1 with 114 new sequence designations and 8 updated from BF.1
  • Added new lineage BF.2 with 133 new sequence designations and 5 updated from BA.5.2.1
  • Added new lineage BF.3 with 38 new sequence designations and 5 updated from BA.5.2.1
  • Added new lineage BF.4 from #788 with 80 new sequence designations, and 2 updated designations from BA.5.2.1
  • Added new lineage BF.5 with 986 new designations and 344 updated from BA.5.2.1
  • Added new lineage BG.3 from #784 with 28 new sequence designations, and 1 updated designations from BA.2.12.1
  • Added new lineage BG.4 with 102 new sequence designations and 9 updated from BA.2.12.1
  • Added 1000 new BA.2.38 sequence designations
  • Added 1000 new BA.5 sequence designations
  • Added 2000 new BA.5.2 sequence designations
  • Added 2000 new BA.5.2.1 sequence designations
  • Added 2000 new BA.5.5 sequence designations
  • Added 300 new BA.4.1.1 sequence designations
  • Added 3000 new BA.4.1 sequence designations
  • Added 3000 new BA.5.1 sequence designations
  • Added 38 new BA.2.75 sequence designations
  • Added 400 new BA.2.40.1 sequence designations
  • Added 400 new BA.2.42 sequence designations
  • Added 400 new BA.5.3 sequence designations
  • Added 4000 new BA.4 sequence designations
  • Added 40000 new BA.1.1 sequence designations
  • Added 40000 new BA.2 sequence designations
  • Added 500 new BA.5.3.1 sequence designations
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