BrainStat

Commits

• b607d31: fix requires (#167) (Reinder Vos de Wael) #167

Commits

• 0a8c280: bump version (#164) (Reinder Vos de Wael) #164
• ad4a369: [REF] Fix Python requires, bump version (#165) (Reinder Vos de Wael) #165
• 69222e3: [FIX] fix python_requires, version bump (#166) (Reinder Vos de Wael) #166

Commits

• 8da1d07: [TST] Added random_field_theory test generation. (Reinder Vos de Wael)
• f97f3c5: Revert "[TST] Added random_field_theory test generation." (Reinder Vos de Wael)
• 0467c35: Update python_coverage.yml (#135) (Reinder Vos de Wael) #135
• f6a9dc3: [FIX] Matlab linear model fix (#124) (Reinder Vos de Wael) #124
• 23447c4: Datagen mesh edges (#131) (Şeyma Bayrak) #131
• f34ffa0: [TST] data generation for random_field_theory (#134) (Reinder Vos de Wael) #134
• c3d631c: [GIT] Update CI triggers. (#141) (Reinder Vos de Wael) #141
• fd8b200: [REF] Updates context.genetics function (#140) (Ross Markello) #140
• 912b238: [REF] Replaces numpy_groupies with np.bincount (#142) (Reinder Vos de Wael) #142
• c5e4a3f: [ENH] Added a tutorial dataset fetcher (#144) (Reinder Vos de Wael) #144
• 2bc713c: [TST] Datagen fdr (#132) (Şeyma Bayrak) #132
• f282336: [REF, DOC] Cleaning up / Documentation (#125) (Reinder Vos de Wael) #125
• a152512: [FIX] Set sphinx==3.5.4 - 4.0.0 results in errors. (#146) (Reinder Vos de Wael) #146
• dc08365: [ENH, FIX] Added tutorial 1. (#145) (Reinder Vos de Wael) #145
• d1e572e: [REF] Change term/random for FixedEffect/MixedEffect (#143) (Reinder Vos de Wael) #143
• 2a3ecd0: Datagen smoo (#149) (Şeyma Bayrak) #149
• cc199bc: [ENH, DOC] Context decoding tutorial (#148) (Reinder Vos de Wael) #148
• ddfc0de: [TST] Datagen peak clus (#136) (Şeyma Bayrak) #136
• 5d93dd6: [TST] Datagen resels (#147) (Şeyma Bayrak) #147
• 48c4467: [TST] Datagen f (#152) (Şeyma Bayrak) #152
• 8091f08: [TST] Datagen ttest (#155) (Şeyma Bayrak) #155
• 39026bc: Datagen stat threshold (#154) (Şeyma Bayrak) #154
• e6f0379: [TST] Datagen mesh normalize (#153) (Şeyma Bayrak) #153
• c28d8a0: [DOC, ENH] MPC context decoding (#157) (Reinder Vos de Wael) #157
• 9a877ff: [TST] Add URL test for histology (#160) (Reinder Vos de Wael) #160
• 6fbfd31: [FIX] Fix readthedocs (#161) (Reinder Vos de Wael) #161
• 66eb83c: [TST] MATLAB now uses new test files (#162) (Reinder Vos de Wael) #162
• d7a4f4a: bump version (Reinder Vos de Wael) #164

Commits

• [202faa1]: test data for linear models generated (Şeyma Bayrak) #110
• [c469c38]: initial test data generator coupled with test_linear_model.py (Şeyma Bayrak) #110
• [09affaa]: data dir is called from .testutils (Şeyma Bayrak) #110
• [6ddf6b4]: flake8 style correction (Şeyma Bayrak) #110
• [07d7e2a]: add file thickness_n10.h5 (Şeyma Bayrak) #110
• [103ad76]: try adding h5py requirement for CI checks (Şeyma Bayrak) #110
• [4525106]: remove h5py dependency (Şeyma Bayrak) #110
• [3a36a29]: remove thickness_n10.h5 (Şeyma Bayrak) #110
• [b038650]: h5py replaced with pickle, 2 functions added for random data generation and output pickle file save (Şeyma Bayrak) #110
• [a3ca5e0]: h5py replaced with pickle (Şeyma Bayrak) #110
• [bfb271c]: styling.. (Şeyma Bayrak) #110
• [7d93b64]: temporary edits: comment out extern repo (Şeyma Bayrak) #110
• [184b03f]: styling, v2 (Şeyma Bayrak) #110
• [5a66b5e]: tmp (Şeyma Bayrak) #110
• [6351a38]: styling 3.. (Şeyma Bayrak) #110
• [11cab0d]: styling 4.. (Şeyma Bayrak) #110
• [2e6ad40]: uncouple data generation from test itself, removing cache file (Şeyma Bayrak) #110
• [fbc8c56]: Merge branch 'master' into datagen_black (Reinder Vos de Wael) #115
• [658423a]: [ENH] First stage of SLM class (Reinder Vos de Wael) #112
• [5788cec]: [ENH] Added (untested) t_test and linear_model (Reinder Vos de Wael) #112
• [0c1ae7d]: [ENH] Added apply/undo mask. (Reinder Vos de Wael) #112
• [e567f3c]: [TST] Brainstat_utils unit tests (Reinder Vos de Wael) #112
• [e360f78]: [FIX] Fixed test_utils (Reinder Vos de Wael) #112
• [82cba95]: [FIX] Fix undo mask (Reinder Vos de Wael) #112
• [a4aca98]: [FIX] Fix mask funcs (Reinder Vos de Wael) #112
• [8c853f5]: [FIX] Fixed apply and undo mask. (Reinder Vos de Wael) #112
• [64b6939]: [ENH] SLM linear_model implemented (Reinder Vos de Wael) #112
• [07bde1f]: [ENH] t-test operational (Reinder Vos de Wael) #112
• [db643ec]: [ENH] Added fdr and resels (Reinder Vos de Wael) #112
• [021cd30]: [ENH] Added random field theory (Reinder Vos de Wael) #112
• [069a6c6]: [ENH] Added peak_clus (Reinder Vos de Wael) #112
• [092bcb8]: [ENH] Added f-test (Reinder Vos de Wael) #112
• [1e90684]: [TST] Added a basic SLM test (Reinder Vos de Wael) #112
• [7c1e32d]: [FIX] Fixed temporary SLM test (Reinder Vos de Wael) #112
• [fb54a2d]: Merge branch 'master' into matlab_slm (Reinder Vos de Wael) #112
• [1737fa5]: Merge branch 'master' into matlab_slm (Reinder Vos de Wael) #112
• [b384352]: Merge branch 'master' into datagen (Reinder Vos de Wael) #110
• [39dac94]: docs polished in brainstat/mesh/data.py (#126) (Şeyma Bayrak) #126
• [d03bf35]: [REF] Standardize Python/MATLAB nomenclature (#120) (Reinder Vos de Wael) #120
• [db31dd9]: [FIX] CI now works on forks (#128) (#129) (Reinder Vos de Wael) #129
• [e090d9e]: [DOC] Updated the installation guide. (#122) (Reinder Vos de Wael) #122
• [2166217]: [FIX] Fixed installation dependencies (#133) (Reinder Vos de Wael) #133

Commits

• [b441c33]: [DOC] Tutorial 1 (#81) (Reinder Vos de Wael) #81
• [e129a1f]: [DOC] Fixed docs (Reinder Vos de Wael)
• [6be7526]: [FIX] Fixed a conf.py issue (#98) (Reinder Vos de Wael) #98
• [cfe7869]: [DOC] Slight changes in documentation hierarchy (#96) (Boris Bernhardt) #96
• [b305cb8]: [REF] Homogenized some of the MATLAB directory naming with Python (#99) (Reinder Vos de Wael) #99
• [ec1071f]: [FIX] Fixed conf.py parsing (#103) (Reinder Vos de Wael) #103
• [a0f0206]: [DOC] Updated badge links (#104) (Reinder Vos de Wael) #104
• [7d9ccbc]: [TST] linmod unit tests (Reinder Vos de Wael) #107
• [0f19cc1]: [ENH] SLM class (#100) (Reinder Vos de Wael) #100
• [209fb61]: [TST] Added more SurfStat tests (Reinder Vos de Wael) #107
• [48c48a6]: [TST] Updated azure pipelines (Reinder Vos de Wael) #107
• [91f75b7]: Force azure trigger (Reinder Vos de Wael) #107
• [5a0190f]: [FIX] Fix azure trigger (Reinder Vos de Wael) #107
• [519b2b2]: [FIX] Fix azure again (Reinder Vos de Wael) #107
• [15263da]: [FIX] Fix azure pipelines (Reinder Vos de Wael) #107
• [18a1352]: [FIX] fix test -data import (Reinder Vos de Wael) #107
• [7c7b9a7]: Merge branch 'master' into matlab_unittests (Reinder Vos de Wael) #107
• [ee7ff3c]: [FIX] Added Python Install (Reinder Vos de Wael) #107
• [88d82bb]: Merge branch 'matlab_unittests' of github.com:MICA-LAB/BrainStat into matlab_unittests (Reinder Vos de Wael) #107
• [0f35bd6]: [FIX] Remove names (Reinder Vos de Wael) #107
• [a7cf348]: [TST] Added all tests (Reinder Vos de Wael) #107
• [97e54d4]: [TST] Fixed resels test (Reinder Vos de Wael) #107
• [5661c2f]: [TST] More specific test_p test input. (Reinder Vos de Wael) #107
• [26e901d]: [TST] Skip SurfStatp test 18 (Reinder Vos de Wael) #107
• [b031883]: [TST] Fix test 18 detection (Reinder Vos de Wael) #107
• [4340c4f]: [FIX] Fixes Python/MATLAB stat_threshold divergence. (#109) (Reinder Vos de Wael) #109
• [49010af]: [Release] 0.0.1-alpha.3 (#111) (Reinder Vos de Wael) #111
• [7cf7dcb]: Merge branch 'master' into matlab_unittests (Reinder Vos de Wael) #107
• [e28a08d]: Merge branch 'master' into matlab_unittests (Reinder Vos de Wael) #107
• [10bc79c]: [TST] Test Github Actions MATLAB (Reinder Vos de Wael) #107
• [52e9068]: Merge branch 'matlab_unittests' of github.com:MICA-LAB/BrainStat into matlab_unittests (Reinder Vos de Wael) #107
• [91253c5]: [FIX] Fix matlab test data download (Reinder Vos de Wael) #107
• [49555cf]: [FIX] added a matlab source folder (Reinder Vos de Wael) #107
• [38e78d5]: [FIX] Fix source folder (Reinder Vos de Wael) #107
• [eb729d8]: [FIX] Fix source folder (Reinder Vos de Wael) #107
• [f9e425f]: [FIX] Fix source folder (Reinder Vos de Wael) #107
• [7ef9602]: [TST] Remove Azure tests. (Reinder Vos de Wael) #107
• [5ef7d06]: [FIX] Fix YML (Reinder Vos de Wael) #107
• [c3d5e5f]: [GIT] Added MATLAB status badge. (Reinder Vos de Wael) #107
• [95e6060]: [REF] Updated name Python CI to Unit Tests (Reinder Vos de Wael) #107
• [f857aec]: [GIT] Update badges. (Reinder Vos de Wael) #107
• [03c9d1f]: [GIT] Badges... again (Reinder Vos de Wael) #107
• [6fa743b]: [DOC] Added comments to test_precomputed (Reinder Vos de Wael) #107
• [3c17396]: [FIX] Temporary fix for removal of black stable (#114) (Reinder Vos de Wael) #114
• [f0d7a58]: [GIT] Automatic MATLAB Packaging (#113) (Reinder Vos de Wael) #113
• [aa0f8c5]: [GIT] Version bump (#116) (Reinder Vos de Wael) #116
• [93803b5]: [FIX] Fix line 42 (#117) (Reinder Vos de Wael) #117
• [49b7214]: [FIX] Fix tagged release line 46 (#118) (Reinder Vos de Wael) #118
• [08eee86]: [FIX] Fix license push (#119) (Reinder Vos de Wael) #119

This version updates the stats module to include the SLM class.