Fourier analysis and subtomogram averaging of heterogenic cylindrical structures
BSD-3-CLAUSE License
id
argument by @hanjinliu in https://github.com/hanjinliu/cylindra/pull/112
calculate_lattice_structure
by @hanjinliu in https://github.com/hanjinliu/cylindra/pull/117
acryo
by @hanjinliu in https://github.com/hanjinliu/cylindra/pull/120
Full Changelog: https://github.com/hanjinliu/cylindra/compare/v1.0.0.b4...v1.0.0.b5
Published by hanjinliu 3 months ago
This is a small bug-fix release.
griffe
by @hanjinliu in https://github.com/hanjinliu/cylindra/pull/95
Full Changelog: https://github.com/hanjinliu/cylindra/compare/v1.0.0.b3...v1.0.0.b4
Published by hanjinliu 4 months ago
align_averaged
by @hanjinliu in https://github.com/hanjinliu/cylindra/pull/91
Full Changelog: https://github.com/hanjinliu/cylindra/compare/v1.0.0.b2...v1.0.0.b3
Published by hanjinliu 4 months ago
bin_size
parameter to landscape functions by @hanjinliu in https://github.com/hanjinliu/cylindra/pull/86
Array2
instead of HashMap
to speed up RMA by @hanjinliu in https://github.com/hanjinliu/cylindra/pull/87
Full Changelog: https://github.com/hanjinliu/cylindra/compare/v1.0.0.b1...v1.0.0.b2
Published by hanjinliu 6 months ago
Full Changelog: https://github.com/hanjinliu/cylindra/compare/v1.0.0.b0...v1.0.0.b1
Published by hanjinliu 6 months ago
Full Changelog: https://github.com/hanjinliu/cylindra/compare/v1.0.0.a9...v1.0.0.b0
Published by hanjinliu 8 months ago
This is the version used for the biorxiv preprint.
props
by @hanjinliu in https://github.com/hanjinliu/cylindra/pull/54
Full Changelog: https://github.com/hanjinliu/cylindra/compare/v0.13.3...v1.0.0.a9
Published by hanjinliu over 1 year ago
update_variable
method to global variable widget.Published by hanjinliu over 1 year ago
overwrite_project
align_averaged
.list[T]()
since python<3.8 is dropped.infer_polarity
.Published by hanjinliu over 1 year ago
save_project
when some of the spline properties are missing and add tests for this.align_averaged
.Published by hanjinliu over 1 year ago
acryo
.impl_preview
and setup_function_gui
in a separate file.tilt_range
parameter tomogram specific, not to reside in the subtomogram analysis widget (#45).alleviate()
.Published by hanjinliu over 1 year ago
polars
dtype casting errors.open_logger
.Published by hanjinliu over 1 year ago
extend_molecules
is completely changed.load_project_for_reanalysis
This version requires following dependencies.
magic-class==0.6.14
acryo==0.2.1
impy-array==2.2.1
Published by hanjinliu over 1 year ago
acryo>=0.2.0
.polars
in spline properties (#23).acryo.pipe
as much as possible (#25).magicclass.logging
(#27).Published by hanjinliu almost 2 years ago
List
and Tuple
.DataFrameList
and its widget.abstractapi
from magic-class>=0.6.13.Published by hanjinliu almost 2 years ago
Published by hanjinliu almost 2 years ago
GUI
Algorithms
Published by hanjinliu about 2 years ago
CylinderModel
to describe structure. This model includes cylindric shaped molecules generation.alleviate
for convolution of molecule positions.Published by hanjinliu about 2 years ago
cutoff
argument to seam search for much better results.Published by hanjinliu about 2 years ago
magic-class
FieldGroup
to refactor widgets.thread_worker.to_callback
to refactor large part of codes.impy-array
napari.yaml