Physicochemical properties, indices and descriptors for amino-acid sequences.
GPL-3.0 License
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AshleyFactors
descriptors (#5, by @BenSolomon).Peptide
methods not being documented in Sphinx documentation.Published by althonos 2 months ago
Peptide
.Published by github-actions[bot] over 1 year ago
Peptide.svger_descriptors
to compute SVGER descriptors from Tong et al. (2016).Peptide.physical_descriptors
not being computed by Peptide.descriptors
.PCPDescriptors
and PhysicalDescriptors
to the API documentation.Published by github-actions[bot] about 2 years ago
peptides.datasets
data files missing from the source distribution.Published by althonos about 3 years ago
Peptide.counts
method to get the number of occurences of each amino acid in the peptide.Peptide.frequencies
to get the frequencies of each amino acid in the peptide.Peptide.pcp_descriptors
to compute the PCP descriptors from Mathura & Braun (2001).Peptide.sneath_vectors
to compute the descriptors from Sneath (1966).Peptide.structural_class
to predict the structural class of a protein using one of three reference datasets and one of four distance metrics.Peptide.aliphatic_index
now supports unknown Leu/Ile residue (code J).Peptide.hydrophobic_moment
arguments for consistency with profile methods.Peptide
functions now support vectorized code using numpy
if available.Published by althonos about 3 years ago
Initial release.