A Python frontend to (Open Biomedical) Ontologies.
MIT License
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Published by github-actions[bot] about 1 year ago
Published by github-actions[bot] over 1 year ago
Entity.synonyms
setter not accepting frozenset
arguments as expected (#207).networkx
version to v3.0
(#206).Published by althonos almost 2 years ago
LineageIterator.to_set
when starting from an empty set of entities.Published by github-actions[bot] almost 2 years ago
fastobo
dependency to v0.12.2
.chardet
dependency to v5.0
.Published by althonos over 2 years ago
fastobo
dependecy to v0.12.1
Published by althonos over 3 years ago
pronto.pv.PropertyValue
is now an abstract class.pronto.parsers.RdfXmlParser
now ignores synonym Xrefs not inpronto.Entity.definition
documentation now lists return type aspronto.definition.Definition
as expected.pronto.utils.typechecked.disabled
is now reentrant and shouldlxml
instead of xml.etree
, which causedRdfXmlParser
.Published by althonos over 3 years ago
v3
.fastobo
dependency to v0.10.0
.Published by althonos about 4 years ago
pronto.entity
package not being included in source distribution.Published by althonos about 4 years ago
Ontology
.Relationships
view.__all__
attribute to all modules of the data model.RelationshipSet
container like TermSet
with shortcut attributes andRelationship
instances.Relationship.subproperties
and Relationship.superproperties
methodsRelationship
instance.Ontology.synonym_types
method to count (via SizedIterator
) and iterateOntology.get_synonym_type
method to retrieve a single synonym type by IDconsider
, disjoint_from
, disjoint_over
, equivalent_to
, replaced_by
transitive_over
and union_of
properties of Relationship
now returnRelationshipSet
.Term.subclasses
describing the performances ofAttributeError
with the setter of the Entity.synonyms
property.Published by althonos about 4 years ago
Entity.annotations
return a mutable set and add a setter.Term.relationship
erroneously updating the Ontology._lineage
cache.pronto.serializers._fastobo
handling is_a
clauses.Published by althonos about 4 years ago
frozendict
with immutabledict
(#90).fastobo
dependency to v0.9.0
to support inline comments.Published by althonos over 4 years ago
Term.subclasses
and Term.superclasses
.Term.equivalent_to
setter crashing with a NameError
.Entity.synonyms
setter not extracting synonym data.Published by althonos over 4 years ago
anti_symmetric
clauses in OBO typedefs.ResourceWarning
when creating Ontology
from file-handles not mapping