pyrodigal

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

GPL-3.0 License

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139
Committers
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Ecosystems: Python

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pyrodigal - 0.3.1

Published by althonos almost 4 years ago

Added

  • Link to Zenodo record in README.md.
  • Typing :: Typed classifier to the PyPI metadata.
  • Explicit support for Python 3.9.

Changed

  • Streamlined compilation process when building from source distribution.
pyrodigal - 0.3.0

Published by althonos about 4 years ago

Added

  • Thread-safety for all Pyrodigal methods

Fixed

  • Reduced total amount of memory used to allocated dynamic programming
    nodes for a given sequence.
pyrodigal - 0.2.4

Published by althonos about 4 years ago

Added

  • Precompiled wheels for Windows x86-64 platform.

Changed

  • Compilation of large Prodigal/training.c file is now done in chunks
    and uses static const to reduce build time.
pyrodigal - 0.2.3

Published by althonos about 4 years ago

Fixed

  • Buffer overflow issue with Pyrodigal in closed=False mode.
pyrodigal - 0.2.2

Published by althonos over 4 years ago

Added

  • Access to the translation table of a Gene object.
pyrodigal - 0.2.1

Published by althonos over 4 years ago

Fixed

  • Memory issues causing PyPy to crash when using Pyrodigal in single mode.
pyrodigal - 0.2.0

Published by althonos over 4 years ago

Added

  • Support for Prodigal's single mode.
pyrodigal - 0.1.1

Published by althonos over 4 years ago

Added

  • Distribution of CPython wheels for ManyLinux2010 and OSX platforms.
pyrodigal - 0.1.0

Published by althonos over 4 years ago

Initial release.

Package Rankings
Top 7.36% on Pypi.org
Badges
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