tangermeme

This release focuses on attribution methods and other utilities based on better using these attributions.

• Stand-alone implementation of DeepLIFT/SHAP that fixes several small issues with the Captum implementation; bugs, improved batching and throughput for small models, etc.
• Seqlet calling for identifying spans of high-attribution signal
• Plotting and annotations of those plots
• Altered API for saturation_mutagenesis to be more consistent with the results from deep_lift_shap.
• Altered API for several functions to allow the passing in of a custom function to apply, e.g., for marginalize to allow passing in either predict or deep_lift_shap (or any other function) to apply before and after substituting in a motif of interest