The R package 'phylosamp' implements novel tools that estimate the probability of transmission between two cases given phylogenetic linkage and sample size calculations for phylogenetic studies.
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NEWS.md
file to track changes to the package.relR_*
functions to the package to allow for sample size and power calculations when estimating differential transmission between groupsPublished by eclee25 over 1 year ago
testthat
v3pkgdown
site to describe new manuscript's functionsFull Changelog: https://github.com/HopkinsIDD/phylosamp/compare/v0.1.6...v1.0.0
Published by gilesjohnr almost 3 years ago
Updating documentation as requested by CRAN
Published by gilesjohnr about 3 years ago
Citation functionality and updates to documentation.
Published by gilesjohnr about 4 years ago
This release contains minor edits to allowable values in function arguments and edits to documentation, test cases, and vignettes.
Published by gilesjohnr about 4 years ago
First alpha release of the 'phlyosamp' R package. This package implements novel tools that estimate the probability of true transmission between two cases given phylogenetic linkage and the expected number of true transmission links in a sample. The package also contains functions that calculate the sample size needed to correctly identify true pairs at some particular rate.