deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
BSD-3-CLAUSE License
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Published by rpoplin almost 7 years ago
0.4.0
This is the initial open source release of DeepVariant!
It includes a model trained on 9 replicates of NA12878 / HG001 as well as copies each downsampled at 50% coverage. In our tests this additional training data means DeepVariant can generalize to a wider variety of input sequencing data. This produced approximately 100 million training examples. We use the truth set v.3.3.2 from Genome in a Bottle for training. The underlying model is Inception V3.
See historical release notes for more details.
