Toru Niina

Ph.D. (Science). Interested in computational biophysics and software/hardware engineering.

Ecosystems: C++, Rust, Python, Cuda, Jupyter Notebook, Vim, OpenGL

Projects

toml11

TOML for Modern C++

C++ - Released: 19 Apr 2017 - 1,024

ecell4_base

An integrated software environment for multi-algorithm, multi-timescale, multi-spatial-representation simulation of various cellular phenomena

C++ - Released: 23 Oct 2012 - 62

lbvh

an implementation of parallel linear BVH (LBVH) on GPU

Cuda - Released: 29 Jul 2019 - 176

pnm

pbm, pgm, ppm image IO for modern C++ (single header only library)

C++ - Released: 17 Jun 2018 - 23

afmize

generate pseudo-AFM image file from structure file

C++ - Released: 10 Sep 2018 - 12

libasd

C++11/Python3 library to read/write High Speed AFM data file

C++ - Released: 02 Oct 2017 - 13

Boost.toml

header-only C++(98|11|14|17) TOML v0.5.0 parser/encoder depending on Boost

C++ - Released: 17 Apr 2018 - 30

separo-rs

An implementation of SEPARO, a board game, with Monte Carlo Tree Search algorithm in Rust/wasm.

Rust - Released: 16 Aug 2020 - 18

TOMLParser

c++ header only TOML parser

C++ - Released: 18 Aug 2016 - 9

jitome

JIT-Optimized Math Expression

C++ - Released: 17 Nov 2021 - 7

periortree

R-Tree for periodic boundary condition; c++ header only library

C++ - Released: 31 Aug 2017 - 5

tuiwave

TUI waveform viewer

Rust - Released: 21 Jan 2024 - 4

Jarngreipr

forcefield parameter file generator

C++ - Released: 05 Oct 2018 - 3

Coffee-mill

Molecular Dynamics Trajectory Analysis Tools

C++ - Released: 10 Nov 2015 - 5

spray

molecular viewer based on ray-tracing

C++ - Released: 01 Feb 2019 - 4