Projects
pykeen
🤖 A Python library for learning and evaluating knowledge graph embeddings
Python - Released: 24 Feb 2020 - 1,632
bioregistry
📮 An integrative registry of biological databases, ontologies, and nomenclatures.
Python - Released: 08 Dec 2020 - 105
indra
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
Python - Released: 11 Aug 2014 - 175
pystow
👜 Easily pick a place to store data for your Python code.
Python - Released: 03 Dec 2020 - 36
zenodo-client
A tool for automated uploading and version management of scientific data to Zenodo
Python - Released: 01 Mar 2021 - 25
drugbank-downloader
Don't worry about DrugBank licensing - write code that knows how to download it automatically
Python - Released: 14 Dec 2020 - 33
cookiecutter-snekpack
🍪 A cookiecutter package for an enlightened python package
Python - Released: 04 Jan 2021 - 34
torch-max-mem
Decorators for maximizing memory utilization with PyTorch & CUDA
Python - Released: 01 Feb 2022 - 14
umls_downloader
Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically
Python - Released: 21 Nov 2021 - 33
chembl-downloader
Write reproducible code for getting and processing ChEMBL
Jupyter Notebook - Released: 27 Jul 2021 - 61
pybacting
A Python wrapper around Bacting (https://github.com/egonw/bacting)
Python - Released: 29 Jul 2021 - 9
pyrdle
Play Wordle in the CLI. Write an algorithm to play Wordle for you. Ruin all of the fun you've been having.
Python - Released: 04 Jan 2022 - 12
autoreviewer
👁️🗨️ Scientists often do the same bad stuff. Automate giving feedback during peer review.
Python - Released: 22 Aug 2022 - 22
quickstatements_client
A data model and client for QuickStatements (for Wikidata)
Python - Released: 25 Feb 2023 - 8
obo-community-health
🫀 Check the OBO Foundry repositories to see what's going on
Python - Released: 06 Aug 2021 - 2
ols-client
🎡 Unified access to OLS instances like from the EBI and TIB
Python - Released: 12 Jul 2017 - 11
orcid_downloader
Get ORCID in bulk and free it from XML
Jupyter Notebook - Released: 15 Nov 2023 - 5
semantic-pydantic
Annotate data models in Pydantic and APIs in FastAPI with the Bioregistry to make them more FAIR
Python - Released: 09 Jan 2024 - 4
ontoportal-client
🎡 Unified access to OntoPortal instances like BioPortal, AgroPortal, and EcoPortal
Python - Released: 07 Jul 2022 - 4
curies4j
🐸 Idiomatic conversion between URIs and compact URIs (CURIEs)
Java - Released: 08 May 2023 - 9
docdata
Add structured information to the end of your python docstrings
Python - Released: 20 Feb 2021 - 0