NextDenovo

Fast and accurate de novo assembler for long reads

GPL-3.0 License

Stars

360

View Code on GitHub

Ecosystems: Assembly

Issue Statistics

Past Year

All Time

Total Pull Requests

Merged Pull Requests

Total Issues

100

Time to Close Issues

N/A

29 days

Badges

Extracted from project README

Related Projects

kappagate

Predict DNA assembly clone validity rates - powered by Kappa

21 Dec 2018 9

Assemblytics

Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome ass...

15 Mar 2016 133

redundans

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

07 Apr 2015 128

atlas

ATLAS - Three commands to start analyzing your metagenome data

30 Nov 2016 370

asap

A scalable bacterial genome assembly, annotation and analysis pipeline

06 Aug 2017 62

aviary

A hybrid assembly and MAG recovery pipeline (and more!)

11 Jun 2020 81

svim-asm

Structural Variant Identification Method using Genome Assemblies

07 Aug 2019 92

SOAPdenovo-Trans

SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluat...

18 Mar 2015 31

jcvi

Python library to facilitate genome assembly, annotation, and comparative genomics

01 Dec 2010 741

GetOrganelle

Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)

20 Apr 2016 266

genomepy

genes and genomes at your fingertips

16 Dec 2016 377

riboSeed

pipeline for using ribosomal flanking regions to improve bacterial genome assembly

19 Sep 2016 8

bookend

End-guided RNA assembler

29 Jan 2020 15

platon

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemb...

19 Jun 2019 98

demultiplex

Sequana demultiplexing pipeline

26 Nov 2019 4