platon

Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

GPL-3.0 License

Downloads
151
Stars
98
Committers
5
View Code on GitHub Visit Website View on X
Ecosystems: Assembly

Commit Statistics

Past Year

All Time

Total Commits
185
Total Committers
6
Avg. Commits Per Committer
30.83
Bot Commits
0

Issue Statistics

Past Year

All Time

Total Pull Requests
0
5
Merged Pull Requests
0
5
Total Issues
5
42
Time to Close Issues
26 days
about 2 months
Package Rankings
Top 15.76% on Pypi.org
Badges
Extracted from project README
DOI:10.1099/mgen.0.000398 License: GPL v3 PyPI Conda DOI DOI
Related Projects
jcvi

Python library to facilitate genome assembly, annotation, and comparative genomics

01 Dec 2010 741
kappagate

Predict DNA assembly clone validity rates - powered by Kappa

21 Dec 2018 9
atlas

ATLAS - Three commands to start analyzing your metagenome data

30 Nov 2016 370
svim-asm

Structural Variant Identification Method using Genome Assemblies

07 Aug 2019 92
wally

Wally: Visualization of aligned sequencing reads and contigs

19 Oct 2021 89
genomepy

genes and genomes at your fingertips

16 Dec 2016 377
arcs

🌈Scaffold genome sequence assemblies using linked or long read sequencing data

06 Jun 2016 91
mooda

A DNA design and assembly method based on multi-objective optimization.

06 May 2019 6
redundans

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

07 Apr 2015 128
demultiplex

Sequana demultiplexing pipeline

26 Nov 2019 4
asap

A scalable bacterial genome assembly, annotation and analysis pipeline

06 Aug 2017 62
GetOrganelle

Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)

20 Apr 2016 266
riboSeed

pipeline for using ribosomal flanking regions to improve bacterial genome assembly

19 Sep 2016 8
abyss

Assemble large genomes using short reads

19 Mar 2012 308
indra

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly syste...

11 Aug 2014 175