GenomicAnnotations.jl

GenomicAnnotations v0.3.7

Diff since v0.3.6

GenomicAnnotations v0.3.6

Diff since v0.3.5

GenomicAnnotations v0.3.5

Diff since v0.3.4

GenomicAnnotations v0.3.4

Diff since v0.3.3

GenomicAnnotations v0.3.3

Diff since v0.3.2

Merged pull requests:

• bugfix for delete!(genes) (#10) (@hsianktin)

Closed issues:

• Having location field in genes (#11)
• Trouble loading .gb file downloaded via benchling (#13)

GenomicAnnotations v0.3.2

Diff since v0.3.1

Closed issues:

• GzipDecompressorStream not defined (#8)

GenomicAnnotations v0.3.1

Diff since v0.3.0

GenomicAnnotations v0.3.0

Diff since v0.2.3

GenomicAnnotations v0.2.3

Diff since v0.2.2

Closed issues:

• Error when loading genebank file from NCBI (#7)

GenomicAnnotations v0.2.2

Diff since v0.2.1

GenomicAnnotations v0.2.1

Diff since v0.2.0

Updated to a Reader/Writer interface for IO, and moved GenBank and GFF IO to separate submodules.

GenomicAnnotations v0.2.0

Diff since v0.1.6

Updated to the new (v0.20) DataFrames API.
Fixed a bug when reading files with empty lines.

GenomicAnnotations v0.1.5

Diff since v0.1.4

Merged pull requests:

• Install TagBot as a GitHub Action (#3) (@JuliaTagBot)
• Parsegff (#4) (@kdyrhage)

v0.1.4 (2019-12-12)

Diff since v0.1.2

Updated for DataFrames v0.19.0.

Some updates:

• Added GZip.jl as a dependency, and updated readgbk to read gzipped files.
• Allowed parsing of loci with "^" in the position string
• Added special cases to @genes.
  • iscds expands to :feature == "CDS"
  • get(s::Symbol, default) expands to get(gene, s, default)
  • When providing just a symbol (such as in @genes(chr, :pseudo)), missings will be treated as falses.