GenomicAnnotations.jl

MIT License

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GenomicAnnotations.jl -

Published by kdyrhage almost 4 years ago

Updated to the new (v0.20) DataFrames API.
Fixed a bug when reading files with empty lines.

GenomicAnnotations.jl -

Published by kdyrhage over 5 years ago

Updated for DataFrames v0.19.0.

GenomicAnnotations.jl -

Published by kdyrhage over 5 years ago

Some updates:

  • Added GZip.jl as a dependency, and updated readgbk to read gzipped files.
  • Allowed parsing of loci with "^" in the position string
  • Added special cases to @genes.
    • iscds expands to :feature == "CDS"
    • get(s::Symbol, default) expands to get(gene, s, default)
    • When providing just a symbol (such as in @genes(chr, :pseudo)), missings will be treated as falses.
GenomicAnnotations.jl - Initial release

Published by kdyrhage about 6 years ago