SubstitutionModels.jl
Biological Sequence Substitution Models for Julia
OTHER License
Bot releases are hidden (Show)
Update stable docs
Published by jangevaare over 5 years ago
- This release adds scaling features to P and Q matrix calculations such that a branch length of 1 means 1 expected substitution per site (#16)
Published by jangevaare over 5 years ago
- Bug fixes for P matrix calculation for TN93 and related models
- Additional tests for existing models
Published by jangevaare over 5 years ago
- Update Eigen decomposition function name for Julia 1.0
- Optimization for calculating vectors of P matrices
- JC69 P matrix calculations bug fix
Published by jangevaare about 6 years ago
Support for Julia 0.7/1.0 (and support for Julia 0.6 dropped)
Published by jangevaare almost 7 years ago
This release provides basic functionality for absolute and relative rate forms of the following common nucleotide substitution models:
- JC69,
- K80,
- F81,
- F84,
- HKY85,
- TN93, and,
- GTR.
A framework for adding user defined substitution models is also provided.
