SubstitutionModels.jl
Biological Sequence Substitution Models for Julia
OTHER License
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Update stable docs
Published by github-actions[bot] about 3 years ago
SubstitutionModels v0.5.0
- [compat] update
- More consistent constructor
safeargument - Fix docs and CI
Published by github-actions[bot] about 4 years ago
Published by julia-tagbot[bot] over 4 years ago
v0.4.1 (2020-01-19)
Merged pull requests:
- Support BioSymbols 3.x to enable Julia 1.0 to pass? (#24) (jangevaare)
- CompatHelper: add new compat entry for "BioSymbols" at version "4.0" (#23) (github-actions[bot])
- CompatHelper: add new compat entry for "StaticArrays" at version "0.12" (#22) (github-actions[bot])
- Docs update (#21) (jangevaare)
Published by julia-tagbot[bot] over 5 years ago
v0.4.0 (2019-06-12)
Closed issues:
- Docs no longer being generated (#19)
Merged pull requests:
- Expansion of constructors methods for Nucleic Acid Substitution Models (#18) (jangevaare)
Published by julia-tagbot[bot] over 5 years ago
Published by jangevaare over 5 years ago
- This release adds scaling features to P and Q matrix calculations such that a branch length of 1 means 1 expected substitution per site (#16)
Published by jangevaare over 5 years ago
- Bug fixes for P matrix calculation for TN93 and related models
- Additional tests for existing models
Published by jangevaare over 5 years ago
- Update Eigen decomposition function name for Julia 1.0
- Optimization for calculating vectors of P matrices
- JC69 P matrix calculations bug fix
Published by jangevaare about 6 years ago
Support for Julia 0.7/1.0 (and support for Julia 0.6 dropped)
Published by jangevaare almost 7 years ago
This release provides basic functionality for absolute and relative rate forms of the following common nucleotide substitution models:
- JC69,
- K80,
- F81,
- F84,
- HKY85,
- TN93, and,
- GTR.
A framework for adding user defined substitution models is also provided.
