pango-designation
Repository for suggesting new lineages that should be added to the current scheme
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Published by chrisruis almost 3 years ago
- Added new lineages AY.76-AY.101, AY.9.1, AY.9.2, AY.9.2.1, AY.91.1, AY.98.1 and AY.99.1-AY.99.2
- Added new lineage AY.102 from #272 with 860 new sequence designations and 1 updated from B.1.617.2
Published by chrisruis almost 3 years ago
- Added new lineages AY.48-AY.75, AY.16.1 and AY.75.1
Published by chrisruis about 3 years ago
- Added new lineages AY.46 and AY.46.1-AY.46.6 from #247. The number of sequence designations in each of these lineages is: AY.46 - 3189, AY.46.1 - 85, AY.46.2 - 481, AY.46.3 - 675, AY.46.4 - 835, AY.46.5 - 37, AY.46.6 - 5209
- Added new lineage AY.47 from #254 with 3286 new sequence designations and 1 updated from B.1.617.2
Published by chrisruis about 3 years ago
- Added new lineage AY.42 from #239 with 14381 new sequence designations and 5 updated from B.1.617.2
- Added new lineage AY.43 from #240 with 66587 new sequence designations and 1 updated from B.1.617.2
- Added new lineage AY.44 from #242 with 19500 new sequence designations and 48 updated from B.1.617.2
- Added new lineage AY.45 from #246 with 3654 new sequence designations and 15 updated from B.1.617.2
Published by chrisruis about 3 years ago
- Added new lineage AY.4.4 from #237 with 1093 new sequence designations
- Added new lineage AY.4.5 from #241 with 3767 new sequence designations
- Added new lineage AY.23.1 from #237 with 883 new sequence designations
- Added new lineage AY.40 from #237 with 529 new sequence designations
- Added new lineage AY.41 from #237 with 1606 new sequence designations
Published by chrisruis about 3 years ago
- Updated designations in the P.1 region of the tree based on #231
- Added new lineages P.1.13, P.1.14, P.1.15, P.1.16, P.1.17 and P.1.17.1
- Updated the designations for P.1, P.1.1-P.1.12, P.1.10.1 and P.1.10.2
- The number of designated sequences within each of these lineages is: P.1 - 30788, P.1.1 - 2647, P.1.2 - 600, P.1.3 - 29, P.1.4 - 326, P.1.5 - 12, P.1.6 - 211, P.1.7 - 1529, P.1.8 - 173, P.1.9 - 159, P.1.10 - 2498, P.1.10.1 - 83, P.1.10.2 - 24, P.1.11 - 35, P.1.12 - 559, P.1.13 - 930, P.1.14 - 15461, P.1.15 - 2755, P.1.16 - 2196, P.1.17 - 2997, P.1.17.1 - 890
Published by chrisruis about 3 years ago
- Added new lineage AY.29.1 from #224 with 1863 new sequence designations and 12 updated from AY.29
- Added new lineage AY.39 from #234 with 2299 new sequence designations and 2 updated from B.1.617.2
- Added new lineage AY.39.1 from #234 with 7516 new sequence designations and 23 updated from B.1.617.2
- Added new lineage AY.39.1.1 from #234 with 38 new sequence designations and 86 updated from AY.39.1
Published by chrisruis about 3 years ago
- Added new lineage AY.4.3 from #222 with 425 new sequence designations
Published by chrisruis about 3 years ago
- Added new lineage AY.4.2 from #223 with 9037 new sequence designations and 38 updated from AY.4
- Updated lineages P.1.1 - P.1.7 based on discussion in #231
Published by chrisruis about 3 years ago
- Removed 57 sequence designations within the Delta lineages that either do not cluster within their designated lineage in the latest UShER tree or are not in the latest UShER tree
Published by chrisruis about 3 years ago
- Added new lineage AY.36 from #225 with 1093 new sequence designations
- Added new lineage AY.37 from #228 with 936 new sequence designations and 6 updated from B.1.617.2
- Added new lineage AY.38 from #229 with 916 new sequence designations and 8 updated from B.1.617.2
Published by chrisruis about 3 years ago
- Updated lineage AY.33 from #215 and #219 to start on the branch with A21647G (S:T29A), likely coinciding with the introduction(s) into Europe. AY.33 has 5669 designated sequences, 5 of which were previously designated B.1.617.2
Published by chrisruis about 3 years ago
- Added new lineage AY.4.1 from #214 with 112 new sequence designations
- Added new lineage AY.34 from #217 with 2535 new sequence designations
- Added new lineage AY.35 from #217 with 570 new sequence designations and 4 updated from B.1.617.2
Published by chrisruis about 3 years ago
- Added new lineage B.1.351.5 from #211 with 1156 new sequence designations
- Added new lineage P.1.12 from #212 with 408 new sequence designations
Published by chrisruis about 3 years ago
- Added new lineage AY.32 from #209 with 354 new sequence designations
- Removed 283 sequence designations from Israel associated with multiple GISAID accessions
- Removed India/KA-NIMH-SEQ-1226/2021 from the AY.3 designations as this potentially clusters elsewhere
Published by chrisruis about 3 years ago
- Added new lineage AY.30 from #207 with 507 new sequence designations and 20 updated from B.1.617.2
- Added 4 new B.1.617.2 sequence designations from #207
- Added new lineage AY.31 from #206 with 27 new sequence designations
Published by chrisruis about 3 years ago
- Added new lineage AY.29 from #208 with 772 new sequence designations and 48 updated from B.1.617.2
Published by chrisruis about 3 years ago
- Added new lineage B.1.638 from #205 with 11 new sequence designations
Published by chrisruis about 3 years ago
- Removed sequences USA/CA-UCSF-UC1042/2021 and USA/CA-UCSF-UC1040/2021 from the designations based on #127
Published by chrisruis about 3 years ago
- Added new lineage C.40 from #203 with 11 new sequence designations
- Removed 288 sequence designations based on #204