alphafold3-pytorch
Implementation of Alphafold 3 in Pytorch
MIT License
What's Changed
- Fix MSA types by @amorehead in https://github.com/lucidrains/alphafold3-pytorch/pull/249
Full Changelog: https://github.com/lucidrains/alphafold3-pytorch/compare/0.5.4...0.5.5
Published by lucidrains about 1 month ago
What's Changed
- Add MSA pairing by @amorehead in https://github.com/lucidrains/alphafold3-pytorch/pull/248
Full Changelog: https://github.com/lucidrains/alphafold3-pytorch/compare/0.5.3...0.5.4
Published by lucidrains about 1 month ago
What's Changed
- Remove now-unused variable by @amorehead in https://github.com/lucidrains/alphafold3-pytorch/pull/245
- Add Gradio interface for AlphaFold protein structure predictions by @vandrw in https://github.com/lucidrains/alphafold3-pytorch/pull/247
Full Changelog: https://github.com/lucidrains/alphafold3-pytorch/compare/0.5.2...0.5.3
Published by lucidrains about 1 month ago
Published by lucidrains about 1 month ago
Published by lucidrains about 1 month ago
Published by lucidrains about 1 month ago
Published by lucidrains about 1 month ago
Published by lucidrains about 1 month ago
What's Changed
- Various template and MSA fixes by @amorehead in https://github.com/lucidrains/alphafold3-pytorch/pull/243
Full Changelog: https://github.com/lucidrains/alphafold3-pytorch/compare/0.4.54...0.4.55
Published by lucidrains about 1 month ago
What's Changed
- Upgrade version of
kalignby @amorehead in https://github.com/lucidrains/alphafold3-pytorch/pull/240
Full Changelog: https://github.com/lucidrains/alphafold3-pytorch/compare/0.4.53...0.4.54
Published by lucidrains about 1 month ago
What's Changed
- Simply skip template feature creation if inputs are too large by @amorehead in https://github.com/lucidrains/alphafold3-pytorch/pull/239
Full Changelog: https://github.com/lucidrains/alphafold3-pytorch/compare/0.4.52...0.4.53
Published by lucidrains about 1 month ago
What's Changed
- Fix path issues during testing by @vandrw in https://github.com/lucidrains/alphafold3-pytorch/pull/236
- Specify test IDs for PDB dataset during tests by @vandrw in https://github.com/lucidrains/alphafold3-pytorch/pull/237
- Address template feature CPU memory issue for large inputs by @amorehead in https://github.com/lucidrains/alphafold3-pytorch/pull/238
Full Changelog: https://github.com/lucidrains/alphafold3-pytorch/compare/0.4.51...0.4.52
Published by lucidrains about 1 month ago
What's Changed
- Standardize
data/testdirectory structure to match that ofdata/pdb_databy @amorehead in https://github.com/lucidrains/alphafold3-pytorch/pull/233 - Update trainer_with_pdb_dataset_and_weighted_sampling.yaml by @amorehead in https://github.com/lucidrains/alphafold3-pytorch/pull/234
- Make template unit vector computations match those of OpenFold by @amorehead in https://github.com/lucidrains/alphafold3-pytorch/pull/235
Full Changelog: https://github.com/lucidrains/alphafold3-pytorch/compare/0.4.50...0.4.51
Published by lucidrains about 1 month ago
Published by lucidrains about 1 month ago
Published by lucidrains about 1 month ago
Published by lucidrains about 2 months ago
Published by lucidrains about 2 months ago
What's Changed
- Allow bond order inference to be skipped for input atomized molecules by @amorehead in https://github.com/lucidrains/alphafold3-pytorch/pull/226
Full Changelog: https://github.com/lucidrains/alphafold3-pytorch/compare/0.4.44...0.4.46
Published by lucidrains about 2 months ago
What's Changed
- Allow bond order inference to be skipped for input atomized molecules by @amorehead in https://github.com/lucidrains/alphafold3-pytorch/pull/226
Full Changelog: https://github.com/lucidrains/alphafold3-pytorch/compare/0.4.44...0.4.45a
Published by lucidrains about 2 months ago
What's Changed
- Allow bond order inference to be skipped for input atomized molecules by @amorehead in https://github.com/lucidrains/alphafold3-pytorch/pull/226
Full Changelog: https://github.com/lucidrains/alphafold3-pytorch/compare/0.4.44...0.4.45