A SnakeMake workflow to analyse whole genome bisulfite sequencing data from allopolyploids.
MIT License
Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)
SARS-CoV-2 analysis pipeline for short-read, paired-end illumina sequencing
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
A toolbox for comparative genomics.
Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).
Source code, data and documentation to demonstrate automation in NGS data analysis
Automated Multi-Locus Sequence Analysis phylogenetic tree construction software
A Python interface to gb-io, a fast GenBank parser written in Rust.
Discovery and characterization of variance QTLs in human induced pluripotent stem cells
genes and genomes at your fingertips
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence ali...
Code for design of diagnostic PCR primers, and metabarcoding markers.
Improving the quality of deep sequencing data
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Query sequence database by HMMs arranged in predefined synteny structure