Generate basic stats for an assembly.
MIT License
Automated Multi-Locus Sequence Analysis phylogenetic tree construction software
Scripts to run several metagenomics assembly programs
A fast Python and command-line utility for extracting simple statistics against genome positions ...
Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)
Targeted Detection and Reconstruction of Plasmids
A simple tool to determine the genome size of an organism
BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
Rapid determination of appropriate reference genomes.
In silico Penicillin Binding Protein (PBP) typer for Streptococcus pneumoniae assemblies
Miscellaneous tools for genomics
Quickly get the taxonomy of a genome
A pipeline to run mapping, mash screen and assembly methods for pATLAS.
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids