Tools for loading NCBI Biosample into an XML database and then transforming that into a SQL database
MIT License
inferring sql queries from plain-text questions about tables
Python package wrapping some of the encode project APIs.
db.py is an easier way to interact with your databases
A Python interface to gb-io, a fast GenBank parser written in Rust.
Improvement of metagenome-assembled genomes
Biomedical Entity Linking Benchmark
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
The Mass Spec Query Language (MassQL) is a domain specific language meant to be a succinct way to...
Quickly get the taxonomy of a genome
Unified Human Gut Virome Catalog
Metagenomic species profiling with enhanced coverage of the human gut microbiome
This repository hosts a comprehensive suite for graph-based entity summarization dataset generati...
python access to UCSC genomes database
Binary Pattern Dictionary Learning for gene activation in microscopy images
Rapid determination of appropriate reference genomes.