bioservices

What's Changed

• Fix issue with compress in uniprot search. by @ArnaudBelcour in https://github.com/cokelaer/bioservices/pull/249
• Updated logging instance by @JoshLoecker in https://github.com/cokelaer/bioservices/pull/250
• Fix uniprot failedids by @cokelaer in https://github.com/cokelaer/bioservices/pull/251
• COG module update to automatically fetch all pages

New Contributors

• @ArnaudBelcour made their first contribution in https://github.com/cokelaer/bioservices/pull/249
• @JoshLoecker made their first contribution in https://github.com/cokelaer/bioservices/pull/250

Full Changelog: https://github.com/cokelaer/bioservices/compare/v1.11.1...v1.11.2

What's Changed

• Fix regression in uniprot module by @cokelaer in https://github.com/cokelaer/bioservices/pull/246

Full Changelog: https://github.com/cokelaer/bioservices/compare/v1.11.0...v1.11.1

• Fix uniprot issue with limitation of 25 items.
• remove deprecated classes
• removed rnaseq_ebi (deprecated service)
• major cleanup (no changes of functionalities)

What's Changed

• Fix uniprot field (issue #226 by @GianArauz in https://github.com/cokelaer/bioservices/pull/232)
• Added documentation by @PoorRican in https://github.com/cokelaer/bioservices/pull/240
• Fix FutureWarning from Pandas by @GianArauz in https://github.com/cokelaer/bioservices/pull/238
• This release replaced v1.10.3 that was faulty

New Contributors

• @GianArauz made their first contribution in https://github.com/cokelaer/bioservices/pull/232
• @PoorRican made their first contribution in https://github.com/cokelaer/bioservices/pull/240

Full Changelog: https://github.com/cokelaer/bioservices/compare/v1.10.1...v1.10.4

What's Changed

• Fix uniprot field (issue #226 by @GianArauz in https://github.com/cokelaer/bioservices/pull/232)
• Added documentation by @PoorRican in https://github.com/cokelaer/bioservices/pull/240
• Fix FutureWarning from Pandas by @GianArauz in https://github.com/cokelaer/bioservices/pull/238

New Contributors

• @GianArauz made their first contribution in https://github.com/cokelaer/bioservices/pull/232
• @PoorRican made their first contribution in https://github.com/cokelaer/bioservices/pull/240

Full Changelog: https://github.com/cokelaer/bioservices/compare/v1.10.1...v1.10.3

What's Changed

• Fix for issue #226 by @GianArauz in https://github.com/cokelaer/bioservices/pull/232 about uniprot
• Update MANIFEST to fix reported bug #235

New Contributors

• @GianArauz made their first contribution in https://github.com/cokelaer/bioservices/pull/232

Full Changelog: https://github.com/cokelaer/bioservices/compare/v1.10.1...v1.10.2a

What's Changed

• Fix pride new api by @cokelaer in https://github.com/cokelaer/bioservices/pull/230
• Fix #225 with improvements on KEGG module

Update uniprot API

Update Unichem with new unichem API from May 2022

Fix warning in KEGG and infinite loo in Biomodels thanks to https://github.com/slobentanzer

• Fix some bug (reported issues) in KEGG
• add biocontainer module
• Fix reactome
• Fix doc and tests as usual

Fix suds requirements

See README for details. Most important: a KEGG quick fix due to a change in the KEGG API.

• remove deprecated services (chemspider,picr,clinvitae)
• general cleanup and bug fixes

Integration of new CI on github action for each web services + fix on psicquic service.

Small fixes on pantherdb and kegg

synchronised with pypi

synchronised version with pypi

synchronised with pypi upload