bwa-meth

fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome

MIT License

Stars
141
Committers
17
View Code on GitHub Visit Website View on X
Ecosystems: Python

Commit Statistics

Past Year

All Time

Total Commits
5
333
Total Committers
2
17
Avg. Commits Per Committer
2.5
19.59
Bot Commits
0
0

Issue Statistics

Past Year

All Time

Total Pull Requests
2
35
Merged Pull Requests
2
33
Total Issues
14
135
Time to Close Issues
about 2 hours
8 months
Related Projects
MetaBCC-LR

Reference-free Binning of Metagenomics Long Reads using Coverage and Composition

21 Oct 2019 19
mergesam

Automate common sam & bam conversions

26 Aug 2011 7
bs3

BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.

17 Aug 2016 26
binf-scripts

A collection of useful bioinformatics scripts.

30 Mar 2016 7
stitch

Overlap assembler of paired-end DNA sequences generated by Illumina

06 Apr 2010 21
burrows_wheeler_alignment

A python implementation of the Burrows Wheeler Alignment for DNA sequence matching

24 Nov 2012 12
automlsa2

Automated Multi-Locus Sequence Analysis phylogenetic tree construction software

15 Oct 2020 5
ngs-tools

Miscellaneous tools for genomics

23 Sep 2016 7
pyfamsa

Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence ali...

28 Jul 2022 28
pysamstats

A fast Python and command-line utility for extracting simple statistics against genome positions ...

30 Oct 2012 190
bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

15 Jan 2020 438
sufam

Super sensitive mutation validator, uses sam/bam and vcf

27 May 2015 7
edlib

Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) ...

19 Jan 2014 484
referenceseeker

Rapid determination of appropriate reference genomes.

01 Nov 2018 88