fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome
MIT License
Reference-free Binning of Metagenomics Long Reads using Coverage and Composition
Automate common sam & bam conversions
BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
A collection of useful bioinformatics scripts.
Overlap assembler of paired-end DNA sequences generated by Illumina
A python implementation of the Burrows Wheeler Alignment for DNA sequence matching
Automated Multi-Locus Sequence Analysis phylogenetic tree construction software
Miscellaneous tools for genomics
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence ali...
A fast Python and command-line utility for extracting simple statistics against genome positions ...
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Super sensitive mutation validator, uses sam/bam and vcf
Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) ...
Rapid determination of appropriate reference genomes.