combining p-values using modified stouffer-liptak for spatially correlated results (probes)
MIT License
A fast Python and command-line utility for extracting simple statistics against genome positions ...
Code for design of diagnostic PCR primers, and metabarcoding markers.
Effective selection of population size projection for construction of the site frequency spectrum...
Frequently used commands in bioinformatics
forced alignment of lists of string by fuzzy string matching
A toolbox for comparative genomics.
Quickly calculate coverage of sequences in a .sam file while retaining breadth information
Miscellaneous tools for genomics
Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Pathmatcher - Manipulate file paths trees like simple text using powerful regular expressions!
Automated Multi-Locus Sequence Analysis phylogenetic tree construction software
Copy number caller for long read data including SNV utilization
Quickly get the taxonomy of a genome
Targeted Detection and Reconstruction of Plasmids