A toolbox for comparative genomics.
GPL-3.0 License
A toolbox for improving metagenome-assembled genomes.
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence ali...
A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.
Application and Python module for average nucleotide identity analyses of microbes.
A Python interface to gb-io, a fast GenBank parser written in Rust.
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now ...
Metagenomic species profiling with enhanced coverage of the human gut microbiome
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
MicrobeCensus estimates the average genome size of microbial communities from metagenomic data
Physicochemical properties, indices and descriptors for amino-acid sequences.
genes and genomes at your fingertips
Improvement of metagenome-assembled genomes
Automated Multi-Locus Sequence Analysis phylogenetic tree construction software
Rapid determination of appropriate reference genomes.
Code for design of diagnostic PCR primers, and metabarcoding markers.