cruzdb

GFFutils_old

NOTE: see new version at https://github.com/daler/gffutils.

gemini

a lightweight db framework for exploring genetic variation.

covid19

SARS-CoV-2 analysis pipeline for short-read, paired-end illumina sequencing

pca-on-genotypes

referenceseeker

Rapid determination of appropriate reference genomes.

ucsc_genomes_downloader

Python package to quickly download genomes from the UCSC.

RefineM

A toolbox for improving metagenome-assembled genomes.

bs3

BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.

genomepy

genes and genomes at your fingertips

UHGV

Unified Human Gut Virome Catalog

biosample-xmldb-sqldb

Tools for loading NCBI Biosample into an XML database and then transforming that into a SQL database

dbxref

Resolve und retrieve database cross reference data used in bioinformatics databases

gb-io.py

A Python interface to gb-io, a fast GenBank parser written in Rust.

belb

Biomedical Entity Linking Benchmark

automlsa2

Automated Multi-Locus Sequence Analysis phylogenetic tree construction software