✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)
APACHE-2.0 License
Diffusers training with mmengine
A repository with exploration into using transformers to predict DNA ↔ transcription factor binding
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details...
Open source code for AlphaFold.
Implementation of the DDPM + IPA (invariant point attention) for protein generation, as outlined ...
Projecting Molecules into Synthesizable Chemical Spaces (ICML 2024)
Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protei...
Replication attempt for the Protein Folding Model described in https://www.biorxiv.org/content/10...
Implementation of Alphafold 3 in Pytorch
Multi-modal Molecule Structure-text Model for Text-based Editing and Retrieval, Nat Mach Intell 2...
Code for running RFdiffusion
Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch
Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
💊 A 3D Generative Model for Structure-Based Drug Design (NeurIPS 2021)