DPM360

Repository for Disease Progression Modeling workbench 360 - An end-to-end deep learning model training framework in python on OMOP data

APACHE-2.0 License

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DPM360 - Lightsaber version 0.3 Latest Release

Published by pchakraborty1 about 2 years ago

Highlights

  • upgraded pytorch_lightning to version 1.6.4
  • updated test script, api largely backported
  • Updated example for LSTM/HistGBT

Changes in API:

  • pl_trainer.run_training_with_mlflow:

    • Call Signature updated

      • dataloaders can be now passed directly here instead of in wrapped model
      • instead of instantiated trainer, arguments supported by pytorch lightning Trainer is passed as Namespace/ArgumentParser
    • Return type updated. validation/test input and outputs (e.g. y_val, y_pred) are now numpy not torch tensors

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