An integrated software environment for multi-algorithm, multi-timescale, multi-spatial-representation simulation of various cellular phenomena
GPL-3.0 License
E-Cell System is a software platform for modeling, simulation and analysis of complex, heterogeneous and multi-scale systems like a cell.
See https://ecell4.e-cell.org/
Distributed Task Queue (development branch)
Fast data visualization and GUI tools for scientific / engineering applications
An interactive heatmap visualization built using D3.js
PySpark + Scikit-learn = Sparkit-learn
An environmental monitoring and regulation system
Access to Biological Web Services from Python.
Pythonic wrapper for the Google Sheets API
pure-Python HistFactory implementation with tensors and autodiff
Python modules and notebooks to process data and run STEMMUS-SCOPE model
3D molecular fingerprints
Bayesian Modeling and Probabilistic Programming in Python
User-friendly tool to infer cell-cell interactions and communication from gene expression of inte...
MDAnalysis is a Python library to analyze molecular dynamics simulations.
A multiscale cellular architecture visualization toolkit.
scCellFie, inspired by the MATLAB-based CellFie tool, offers advanced analysis of metabolic funct...