GPL-3.0 License
Overlap assembler of paired-end DNA sequences generated by Illumina
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Consensus sequences for each Pango lineage
Rapid determination of appropriate reference genomes.
Streamlining phylogenomic data gathering, processing and visualization
Namespace encoding hierarchical relationships between proteins, protein families, and protein com...
Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)
Automated Multi-Locus Sequence Analysis phylogenetic tree construction software
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
forced alignment of lists of string by fuzzy string matching
A Python FASTA file Parser and Writer.
BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
Targeted Detection and Reconstruction of Plasmids
Miscellaneous tools for genomics
A collection of useful bioinformatics scripts.