enhancer-snakemake-demo

Demos a Snakemake workflow to classify enhancer regions based on publicly available chromatin marks.

Stars
6
View Code on GitHub
Ecosystems: Python

Statistics for this project are still being loaded, please check back later.

Related Projects
metaseq

Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data

05 Apr 2012 87
covid19

SARS-CoV-2 analysis pipeline for short-read, paired-end illumina sequencing

24 Jan 2021 6
snakefiles

Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).

24 Nov 2015 87
snakemake-parallel-bwa

A Snakefile to parallelize bwa.

11 Apr 2013 13
pybedtools

Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")

14 May 2010 293
SNARE-seq

Code to process raw SNARE-seq ATAC reads

26 May 2020 7
singlet

Single cell RNA Seq data analysis with quantitative phenotypes

08 Aug 2017 12
encode-dataframe

Convert UCSC's ENCODE metadata into pandas DataFrames

22 Aug 2014 9
chromhmm-tools

Helpers for working with ChromHMM (http://compbio.mit.edu/ChromHMM/)

04 Nov 2013 15
enrichr

A python wrapper for Enrichr APIs

05 May 2018 8
automlsa2

Automated Multi-Locus Sequence Analysis phylogenetic tree construction software

15 Oct 2020 5
SN2N

Official PyTorch implementation of the "SN2N" -v0.3.5

23 Dec 2023 6
singlecell-ige

Alignment and antibody assembly pipelines for Croote et al. (Science, 2018)

27 Aug 2018 8
basc

Processing pipeline for single-cell barcoded Tn5 assays

28 Sep 2021 0
bs3

BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.

17 Aug 2016 26