find_differential_primers

Clairvoyante

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecu...

ProteinDT

peptides.py

Physicochemical properties, indices and descriptors for amino-acid sequences.

RefineM

A toolbox for improving metagenome-assembled genomes.

IGGsearch

Metagenomic species profiling with enhanced coverage of the human gut microbiome

gb-io.py

A Python interface to gb-io, a fast GenBank parser written in Rust.

teloclip

A tool for the recovery of unassembled telomeres from soft-clipped read alignments.

pyani

Application and Python module for average nucleotide identity analyses of microbes.

pyfamsa

Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence ali...

pbptyper

In silico Penicillin Binding Protein (PBP) typer for Streptococcus pneumoniae assemblies

MAGpurify

Improvement of metagenome-assembled genomes

pyrodigal-gv

A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.

redundans

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

referenceseeker

Rapid determination of appropriate reference genomes.

UHGV

Unified Human Gut Virome Catalog