Code for design of diagnostic PCR primers, and metabarcoding markers.
MIT License
Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecu...
Physicochemical properties, indices and descriptors for amino-acid sequences.
A toolbox for improving metagenome-assembled genomes.
Metagenomic species profiling with enhanced coverage of the human gut microbiome
A Python interface to gb-io, a fast GenBank parser written in Rust.
A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
Application and Python module for average nucleotide identity analyses of microbes.
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence ali...
In silico Penicillin Binding Protein (PBP) typer for Streptococcus pneumoniae assemblies
Improvement of metagenome-assembled genomes
A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.
Rapid determination of appropriate reference genomes.
Unified Human Gut Virome Catalog