Spectre

Copy number caller for long read data including SNV utilization

MIT License

Downloads
116
Stars
53
View Code on GitHub
Ecosystems: Python

Issue Statistics

Past Year

All Time

Total Pull Requests
2
3
Merged Pull Requests
0
0
Total Issues
29
34
Time to Close Issues
16 days
23 days
Package Rankings
Top 36.8% on Pypi.org
Related Projects
referenceseeker

Rapid determination of appropriate reference genomes.

01 Nov 2018 88
bs3

BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.

17 Aug 2016 26
easySFS

Effective selection of population size projection for construction of the site frequency spectrum...

15 Aug 2016 123
pysamstats

A fast Python and command-line utility for extracting simple statistics against genome positions ...

30 Oct 2012 190
MAGpurify

Improvement of metagenome-assembled genomes

24 Apr 2018 48
tRep

Quickly get the taxonomy of a genome

29 Sep 2017 9
MicrobeCensus

MicrobeCensus estimates the average genome size of microbial communities from metagenomic data

27 Feb 2014 42
Sniffles

Structural variation caller using third generation sequencing

25 Oct 2015 551
biosample-xmldb-sqldb

Tools for loading NCBI Biosample into an XML database and then transforming that into a SQL database

05 Feb 2024 0
IGGsearch

Metagenomic species profiling with enhanced coverage of the human gut microbiome

18 Jul 2018 24
redundans

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

07 Apr 2015 128
Clairvoyante

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecu...

21 Jul 2017 171
bakta

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

15 Jan 2020 438
tadrep

Targeted Detection and Reconstruction of Plasmids

18 May 2022 19
UHGV

Unified Human Gut Virome Catalog

03 Dec 2022 27