genepattern-notebook
Platform for integrating genomic analysis with Jupyter Notebooks.
BSD-3-CLAUSE License
- Support for data panel
- Bug fixes
Published by tmtabor over 1 year ago
- Support for ipywidgets 8, nbtools 23.04
Published by tmtabor almost 3 years ago
- New "demo mode" functionality
- Updated list of GenePattern servers
- Fixed documentation links
Published by tmtabor over 4 years ago
- Fixed bug reading the manifest for password parameters
- Removed custom values from job memory options
- Adding pointer cursor to GenePattern side tab
Published by tmtabor about 5 years ago
- Added support for HTML in module and parameter descriptions
- Cell templates moved to "+" origin
Published by tmtabor about 5 years ago
- Cell template improvements
- Login message fix
- Graceful fail when operating with a non-Python kernel
Published by tmtabor over 5 years ago
- Bug and build fixes
Published by tmtabor over 5 years ago
- Updated information in setup.py
- New numbering scheme
Published by tmtabor over 5 years ago
- Bug fixes
Published by tmtabor over 5 years ago
- Bug fix release
Published by tmtabor almost 6 years ago
- Bug fix release
Published by tmtabor almost 6 years ago
- Removed genepattern.broadinstitute.org from the list of servers
- Added cell templates
- Bug fixes
Published by tmtabor almost 6 years ago
- Default server changed to GenePattern Cloud
- File kinds can include a wildcard character
- Compatibility fix for latest version of ipywidgets
- Combined the gear menus in analysis/job cells
- Warning message added to orphaned analysis cells
- Jobs that output index.html will display it in an iframe
- Bug fixes
Published by tmtabor about 6 years ago
- Bug fix release
Published by tmtabor about 6 years ago
- Refactored to support nbtools 0.2.0
- Moved UI Builder and UI Output functionality to nbtools package
- Support for output files in subdirectories for GPJob widget
Published by tmtabor over 6 years ago
- Added new UI Output widget
- Added option to not add UI Builder functions to the Notebook Tool Manager
- Updated to latest GenePattern URLs
- Better support for multiple widgets in combined cells
- Bug fixes
Published by tmtabor over 6 years ago
- Analysis and job widgets will now appear together in the same cell by default.
- UI Builder cells and outputs will now appear together in the same cell.
- Added a new widget GPUIOutput intended to visually display programmatic output.
- An icon has been added to job widgets, indicating their sharing status.
- Bug fixes.
Published by tmtabor over 6 years ago
- Added the ability to upload files through the UI Builder
- Double-click to edit file parameter functionality
- Added parameter reset to analysis widgets
- Bug fixes
Published by tmtabor over 6 years ago
- GenePattern workflow execution interface added. For more information see the Workflow Execution documentation.
- Support for job result syntax added to GenePattern analyses. This is a simple syntax for specifying GenePattern analysis inputs based on the output of of upstream jobs. For more information see the Job Result Syntax documentation.
- Added support for renaming, hiding or overriding the output variable in the UI Builder.
- Major refactoring of code structure and file names.
- Updated Javascript code to ES6 standard.
- New webpack build process added.
- Bug fixes.
Published by tmtabor almost 7 years ago
- UI Builder now has type-specific support for file, number, password and bool parameters.
- Placeholder job cells added
- Job cells can now send a browser notification when a job completes.
- Added the ability to programmatically set the output variable in the UI Builder.
- Add ability to pass in custom function import path in the UI Builder.
- Bug fixes
